Gene Symbol |
fcn1 |
Entrez Gene ID |
448331 |
Full Name |
ficolin (collagen/fibrinogen domain containing) 1 |
Synonyms |
fcnm,ficolin |
General protein information |
- Preferred Names
ficolin (collagen/fibrinogen domain containing) 1
Names
ficolin (collagen/fibrinogen domain containing) 1
|
Gene Type |
protein-coding |
Organism |
Xenopus tropicalis(tropical clawed frog) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
NM_001004935.1 |
NP_001004935.1 |
ficolin 1 precursor |
XM_012969758.2 |
XP_012825212.1 |
ficolin (collagen/fibrinogen domain containing) 1 isoform X1 |
Xenopus tropicalis (tropical clawed frog) |
col11a2 |
NP_001005799.1 |
Xenopus tropicalis (tropical clawed frog) |
fcn1 |
NP_001004935.1 |
Xenopus tropicalis (tropical clawed frog) |
fcn3 |
NP_001011233.1 |
Xenopus tropicalis (tropical clawed frog) |
LOC100496532 |
XP_002935134.2 |
Xenopus tropicalis (tropical clawed frog) |
LOC100496379 |
XP_002935133.2 |
Xenopus tropicalis (tropical clawed frog) |
fcn3 |
NP_001006718.1 |
Xenopus tropicalis (tropical clawed frog) |
LOC100145014 |
NP_001120041.1 |
Related articles in PubMed
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following fcn1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the fcn1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
OXa02906 |
Clone ID Related Accession (Same CDS sequence) |
NM_001004935.1
|
Accession Version |
NM_001004935.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 990bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-12-21 |
Organism |
Xenopus tropicalis(tropical clawed frog) |
Product |
ficolin 1 precursor |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC075410.1.
##Evidence-Data-START##
Transcript exon combination :: BC075410.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMN06679846, SAMN06679848 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961
| ATGGAAAAAC CACCGACCAT GGGAATTTCT CTTCCAAGTC TCTTTTGTCT GATTCTTGTT GGGATCACAA TATCCTGCCG TGCCCAAGAC ACGTGTCCTG ATGTAAAACT CATTGGAGCT GGAGAATCAG CAAGAATGGC CATTGTAAGA GGGTGTCTGG GGTCTACAGG ATCCACTGGG CAAAAGGGAG AAGCAGGGAC ACAAGGAACC AAAGGAGACC CTGGAATCCC TGGAATGTTG GGCCCCCGGG GTGAGAAAGG AGACATGGGG CCTCCTGGAC CCTGGGGGCC ACCTGGAGTG AAAGGAGACA TTGGGCGTCC TGGACTCTTG GGGCCACTTG GCAAGAAAAC TCCCAAGAAC TGTGTGGAGC TGCTCAATAA TGGAGCCACG CTCACCGGCT GGTACACAGT CTCTCCGGAT GGTAATAAGC CTATAAAGGT TCTCTGTGAC ATGGATACGG ATGGGGGGGG ATGGATAGTG TTTCAGAGAC GAGTGGACGG TTCTGTGGAT TTCTACAGAG ACTGGAAATC CTACAAACAA GGTTTTGGCA GCCAAGTGGG CGAGTTCTGG TTGGGAAATG AGAACATTCA CCTCCTTACG TCCTCAGGGA ATTTCCAACT GCGCTTCGAC CTGGAGGATT TTGACAACAA TCGAAAGTAC GCCACCTACA GCCAATTCCG ACTGGAGGGA GAGTCTCAGA AATACACCCT ACGTTTTGGG GAATTCACTG GGGGCCCTGC AGGGGACTCC TTGTCTTCTC ACAACAACAA AGCTTTCCAA ACAAAGGATG TGGATAATGA TGAGAGTGAT AGTAACTGTG CAGAGTCATT CAAAGGGGCC TGGTGGTATC ACGATTGTTA CTCCTCCTGT CTGAATGGGG AATATTTGCG AGGAGAACAC GATGAGGCAG ATGGAGGAGT CAACTGGGGC GAATTCAGAG GGAATGATTA CTCACTGAAA GTGTCTGAAA TTAAGTTCCG GCCACAATAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001004935.1 |
CDS | 32..1021 |
Translation | |
Target ORF information:
RefSeq Version | NM_001004935.1 |
Organism | Xenopus tropicalis(tropical clawed frog) |
Definition | Xenopus tropicalis ficolin 1 (fcn1), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001004935.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961
| ATGGAAAAAC CACCGACCAT GGGAATTTCT CTTCCAAGTC TCTTTTGTCT GATTCTTGTT GGGATCACAA TATCCTGCCG TGCCCAAGAC ACGTGTCCTG ATGTAAAACT CATTGGAGCT GGAGAATCAG CAAGAATGGC CATTGTAAGA GGGTGTCTGG GGTCTACAGG ATCCACTGGG CAAAAGGGAG AAGCAGGGAC ACAAGGAACC AAAGGAGACC CTGGAATCCC TGGAATGTTG GGCCCCCGGG GTGAGAAAGG AGACATGGGG CCTCCTGGAC CCTGGGGGCC ACCTGGAGTG AAAGGAGACA TTGGGCGTCC TGGACTCTTG GGGCCACTTG GCAAGAAAAC TCCCAAGAAC TGTGTGGAGC TGCTCAATAA TGGAGCCACG CTCACCGGCT GGTACACAGT CTCTCCGGAT GGTAATAAGC CTATAAAGGT TCTCTGTGAC ATGGATACGG ATGGGGGGGG ATGGATAGTG TTTCAGAGAC GAGTGGACGG TTCTGTGGAT TTCTACAGAG ACTGGAAATC CTACAAACAA GGTTTTGGCA GCCAAGTGGG CGAGTTCTGG TTGGGAAATG AGAACATTCA CCTCCTTACG TCCTCAGGGA ATTTCCAACT GCGCTTCGAC CTGGAGGATT TTGACAACAA TCGAAAGTAC GCCACCTACA GCCAATTCCG ACTGGAGGGA GAGTCTCAGA AATACACCCT ACGTTTTGGG GAATTCACTG GGGGCCCTGC AGGGGACTCC TTGTCTTCTC ACAACAACAA AGCTTTCCAA ACAAAGGATG TGGATAATGA TGAGAGTGAT AGTAACTGTG CAGAGTCATT CAAAGGGGCC TGGTGGTATC ACGATTGTTA CTCCTCCTGT CTGAATGGGG AATATTTGCG AGGAGAACAC GATGAGGCAG ATGGAGGAGT CAACTGGGGC GAATTCAGAG GGAATGATTA CTCACTGAAA GTGTCTGAAA TTAAGTTCCG GCCACAATAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OXa26513 |
Clone ID Related Accession (Same CDS sequence) |
XM_012969758.2
|
Accession Version |
XM_012969758.2 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 945bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-09-07 |
Organism |
Xenopus tropicalis(tropical clawed frog) |
Product |
ficolin (collagen/fibrinogen domain containing) 1 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016683412.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process
On Sep 8, 2016 this sequence version replaced XM_012969758.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Xenopus tropicalis Annotation Release 103
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGGAAAAAC CACCGACCAT GGGAATTTCT CTTCCAAGTC TCTTTTGTCT GATTCTTGTT GGGATCACAA TATCCTGCCG TGCCCAAGAC ACGTGTCCTG ATGTAAAACT CATTGGAGCT GGAGAATCAG CAAGAATGGC CATTGTAAGA GGGTGTCTGG GGTCTACAGG ATCCACTGGG CAAAAGGGAG AAGCAGGGAC ACAAGGAACC AAAGGAGACC CTGGAATCCC TGGAATGTTG GGCCCCCGGG GTGAGAAAGG AGACATTGGG CGTCCTGGAC TCTTGGGGCC ACTTGGCAAG AAAACTCCCA AGAACTGTGT GGAGCTGCTC AATAATGGAG CCACGCTCAC CGGCTGGTAC ACAGTCTCTC CGGATGGTAA TAAGCCTATA AAGGTTCTCT GTGACATGGA TACGGATGGG GGGGGATGGA TAGTGTTTCA GAGACGAGTG GACGGTTCTG TGGATTTCTA CAGAGACTGG AAATCCTACA AACAAGGTTT TGGCAGCCAA GTGGGCGAGT TCTGGTTGGG AAATGAGAAC ATTCACCTCC TTACGTCCTC AGGGAATTTC CAACTGCGCT TCGACCTGGA GGATTTTGAC AACAATCGAA AGTACGCCAC CTACAGCCAA TTCCGACTGG AGGGAGAGTC TCAGAAATAC ACCCTACGTT TTGGGGAATT CACTGGGGGC CCTGCAGGGG ACTCCTTGTC TTCTCACAAC AACAAAGCTT TCCAAACAAA GGATGTGGAT AATGATGAGA GTGATAGTAA CTGTGCAGAG TCATTCAAAG GGGCCTGGTG GTATCACGAT TGTTACTCCT CCTGTCTGAA TGGGGAATAT TTGCGAGGAG AACACGATGA GGCAGATGGA GGAGTCAACT GGGGCGAATT CAGAGGGAAT GATTACTCAC TGAAAGTGTC TGAAATTAAG TTCCGGCCAC AATAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_012825212.1 |
CDS | 66..1010 |
Translation | |
Target ORF information:
RefSeq Version | XM_012969758.2 |
Organism | Xenopus tropicalis(tropical clawed frog) |
Definition | Xenopus tropicalis ficolin (collagen/fibrinogen domain containing) 1 (fcn1), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_012969758.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGGAAAAAC CACCGACCAT GGGAATTTCT CTTCCAAGTC TCTTTTGTCT GATTCTTGTT GGGATCACAA TATCCTGCCG TGCCCAAGAC ACGTGTCCTG ATGTAAAACT CATTGGAGCT GGAGAATCAG CAAGAATGGC CATTGTAAGA GGGTGTCTGG GGTCTACAGG ATCCACTGGG CAAAAGGGAG AAGCAGGGAC ACAAGGAACC AAAGGAGACC CTGGAATCCC TGGAATGTTG GGCCCCCGGG GTGAGAAAGG AGACATTGGG CGTCCTGGAC TCTTGGGGCC ACTTGGCAAG AAAACTCCCA AGAACTGTGT GGAGCTGCTC AATAATGGAG CCACGCTCAC CGGCTGGTAC ACAGTCTCTC CGGATGGTAA TAAGCCTATA AAGGTTCTCT GTGACATGGA TACGGATGGG GGGGGATGGA TAGTGTTTCA GAGACGAGTG GACGGTTCTG TGGATTTCTA CAGAGACTGG AAATCCTACA AACAAGGTTT TGGCAGCCAA GTGGGCGAGT TCTGGTTGGG AAATGAGAAC ATTCACCTCC TTACGTCCTC AGGGAATTTC CAACTGCGCT TCGACCTGGA GGATTTTGAC AACAATCGAA AGTACGCCAC CTACAGCCAA TTCCGACTGG AGGGAGAGTC TCAGAAATAC ACCCTACGTT TTGGGGAATT CACTGGGGGC CCTGCAGGGG ACTCCTTGTC TTCTCACAAC AACAAAGCTT TCCAAACAAA GGATGTGGAT AATGATGAGA GTGATAGTAA CTGTGCAGAG TCATTCAAAG GGGCCTGGTG GTATCACGAT TGTTACTCCT CCTGTCTGAA TGGGGAATAT TTGCGAGGAG AACACGATGA GGCAGATGGA GGAGTCAACT GGGGCGAATT CAGAGGGAAT GATTACTCAC TGAAAGTGTC TGAAATTAAG TTCCGGCCAC AATAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.