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fcn1 cDNA ORF clone, Xenopus tropicalis(tropical clawed frog)

Summary

Gene Symbol fcn1
Entrez Gene ID 448331
Full Name ficolin (collagen/fibrinogen domain containing) 1
Synonyms fcnm,ficolin
General protein information
Preferred Names

ficolin (collagen/fibrinogen domain containing) 1

Names

ficolin (collagen/fibrinogen domain containing) 1
Gene Type protein-coding
Organism Xenopus tropicalis(tropical clawed frog)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
NM_001004935.1 NP_001004935.1 ficolin 1 precursor
XM_012969758.2 XP_012825212.1 ficolin (collagen/fibrinogen domain containing) 1 isoform X1

Pathways from BioSystems


Homologies


Xenopus tropicalis (tropical clawed frog) col11a2 NP_001005799.1
Xenopus tropicalis (tropical clawed frog) fcn1 NP_001004935.1
Xenopus tropicalis (tropical clawed frog) fcn3 NP_001011233.1
Xenopus tropicalis (tropical clawed frog) LOC100496532 XP_002935134.2
Xenopus tropicalis (tropical clawed frog) LOC100496379 XP_002935133.2
Xenopus tropicalis (tropical clawed frog) fcn3 NP_001006718.1
Xenopus tropicalis (tropical clawed frog) LOC100145014 NP_001120041.1

Gene Ontology


Bibliography

Related articles in PubMed

Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative.
Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW, Richardson P
Developmental dynamics : an official publication of the American Association of Anatomists225(4)384-91(2002 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following fcn1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the fcn1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OXa02906 NM_001004935.1
Latest version!		 Xenopus tropicalis ficolin 1 (fcn1), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $174.30
$249.00
OXa26513 XM_012969758.2
Latest version!		 Xenopus tropicalis ficolin (collagen/fibrinogen domain containing) 1 (fcn1), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $174.30
$249.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
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*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID OXa02906
Clone ID Related Accession (Same CDS sequence) NM_001004935.1
Accession Version NM_001004935.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 990bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2019-12-21
Organism Xenopus tropicalis(tropical clawed frog)
Product ficolin 1 precursor
Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC075410.1. ##Evidence-Data-START## Transcript exon combination :: BC075410.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN06679846, SAMN06679848 [ECO:0000348] ##Evidence-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGAAAAAC CACCGACCAT GGGAATTTCT CTTCCAAGTC TCTTTTGTCT GATTCTTGTT 
GGGATCACAA TATCCTGCCG TGCCCAAGAC ACGTGTCCTG ATGTAAAACT CATTGGAGCT 
GGAGAATCAG CAAGAATGGC CATTGTAAGA GGGTGTCTGG GGTCTACAGG ATCCACTGGG 
CAAAAGGGAG AAGCAGGGAC ACAAGGAACC AAAGGAGACC CTGGAATCCC TGGAATGTTG 
GGCCCCCGGG GTGAGAAAGG AGACATGGGG CCTCCTGGAC CCTGGGGGCC ACCTGGAGTG 
AAAGGAGACA TTGGGCGTCC TGGACTCTTG GGGCCACTTG GCAAGAAAAC TCCCAAGAAC 
TGTGTGGAGC TGCTCAATAA TGGAGCCACG CTCACCGGCT GGTACACAGT CTCTCCGGAT 
GGTAATAAGC CTATAAAGGT TCTCTGTGAC ATGGATACGG ATGGGGGGGG ATGGATAGTG 
TTTCAGAGAC GAGTGGACGG TTCTGTGGAT TTCTACAGAG ACTGGAAATC CTACAAACAA 
GGTTTTGGCA GCCAAGTGGG CGAGTTCTGG TTGGGAAATG AGAACATTCA CCTCCTTACG 
TCCTCAGGGA ATTTCCAACT GCGCTTCGAC CTGGAGGATT TTGACAACAA TCGAAAGTAC 
GCCACCTACA GCCAATTCCG ACTGGAGGGA GAGTCTCAGA AATACACCCT ACGTTTTGGG 
GAATTCACTG GGGGCCCTGC AGGGGACTCC TTGTCTTCTC ACAACAACAA AGCTTTCCAA 
ACAAAGGATG TGGATAATGA TGAGAGTGAT AGTAACTGTG CAGAGTCATT CAAAGGGGCC 
TGGTGGTATC ACGATTGTTA CTCCTCCTGT CTGAATGGGG AATATTTGCG AGGAGAACAC 
GATGAGGCAG ATGGAGGAGT CAACTGGGGC GAATTCAGAG GGAATGATTA CTCACTGAAA 
GTGTCTGAAA TTAAGTTCCG GCCACAATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001004935.1
CDS32..1021
Translation

Target ORF information:

RefSeq Version NM_001004935.1
Organism Xenopus tropicalis(tropical clawed frog)
Definition Xenopus tropicalis ficolin 1 (fcn1), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001004935.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGAAAAAC CACCGACCAT GGGAATTTCT CTTCCAAGTC TCTTTTGTCT GATTCTTGTT 
GGGATCACAA TATCCTGCCG TGCCCAAGAC ACGTGTCCTG ATGTAAAACT CATTGGAGCT 
GGAGAATCAG CAAGAATGGC CATTGTAAGA GGGTGTCTGG GGTCTACAGG ATCCACTGGG 
CAAAAGGGAG AAGCAGGGAC ACAAGGAACC AAAGGAGACC CTGGAATCCC TGGAATGTTG 
GGCCCCCGGG GTGAGAAAGG AGACATGGGG CCTCCTGGAC CCTGGGGGCC ACCTGGAGTG 
AAAGGAGACA TTGGGCGTCC TGGACTCTTG GGGCCACTTG GCAAGAAAAC TCCCAAGAAC 
TGTGTGGAGC TGCTCAATAA TGGAGCCACG CTCACCGGCT GGTACACAGT CTCTCCGGAT 
GGTAATAAGC CTATAAAGGT TCTCTGTGAC ATGGATACGG ATGGGGGGGG ATGGATAGTG 
TTTCAGAGAC GAGTGGACGG TTCTGTGGAT TTCTACAGAG ACTGGAAATC CTACAAACAA 
GGTTTTGGCA GCCAAGTGGG CGAGTTCTGG TTGGGAAATG AGAACATTCA CCTCCTTACG 
TCCTCAGGGA ATTTCCAACT GCGCTTCGAC CTGGAGGATT TTGACAACAA TCGAAAGTAC 
GCCACCTACA GCCAATTCCG ACTGGAGGGA GAGTCTCAGA AATACACCCT ACGTTTTGGG 
GAATTCACTG GGGGCCCTGC AGGGGACTCC TTGTCTTCTC ACAACAACAA AGCTTTCCAA 
ACAAAGGATG TGGATAATGA TGAGAGTGAT AGTAACTGTG CAGAGTCATT CAAAGGGGCC 
TGGTGGTATC ACGATTGTTA CTCCTCCTGT CTGAATGGGG AATATTTGCG AGGAGAACAC 
GATGAGGCAG ATGGAGGAGT CAACTGGGGC GAATTCAGAG GGAATGATTA CTCACTGAAA 
GTGTCTGAAA TTAAGTTCCG GCCACAATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OXa26513
Clone ID Related Accession (Same CDS sequence) XM_012969758.2
Accession Version XM_012969758.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 945bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-09-07
Organism Xenopus tropicalis(tropical clawed frog)
Product ficolin (collagen/fibrinogen domain containing) 1 isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016683412.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_012969758.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
ATGGAAAAAC CACCGACCAT GGGAATTTCT CTTCCAAGTC TCTTTTGTCT GATTCTTGTT 
GGGATCACAA TATCCTGCCG TGCCCAAGAC ACGTGTCCTG ATGTAAAACT CATTGGAGCT 
GGAGAATCAG CAAGAATGGC CATTGTAAGA GGGTGTCTGG GGTCTACAGG ATCCACTGGG 
CAAAAGGGAG AAGCAGGGAC ACAAGGAACC AAAGGAGACC CTGGAATCCC TGGAATGTTG 
GGCCCCCGGG GTGAGAAAGG AGACATTGGG CGTCCTGGAC TCTTGGGGCC ACTTGGCAAG 
AAAACTCCCA AGAACTGTGT GGAGCTGCTC AATAATGGAG CCACGCTCAC CGGCTGGTAC 
ACAGTCTCTC CGGATGGTAA TAAGCCTATA AAGGTTCTCT GTGACATGGA TACGGATGGG 
GGGGGATGGA TAGTGTTTCA GAGACGAGTG GACGGTTCTG TGGATTTCTA CAGAGACTGG 
AAATCCTACA AACAAGGTTT TGGCAGCCAA GTGGGCGAGT TCTGGTTGGG AAATGAGAAC 
ATTCACCTCC TTACGTCCTC AGGGAATTTC CAACTGCGCT TCGACCTGGA GGATTTTGAC 
AACAATCGAA AGTACGCCAC CTACAGCCAA TTCCGACTGG AGGGAGAGTC TCAGAAATAC 
ACCCTACGTT TTGGGGAATT CACTGGGGGC CCTGCAGGGG ACTCCTTGTC TTCTCACAAC 
AACAAAGCTT TCCAAACAAA GGATGTGGAT AATGATGAGA GTGATAGTAA CTGTGCAGAG 
TCATTCAAAG GGGCCTGGTG GTATCACGAT TGTTACTCCT CCTGTCTGAA TGGGGAATAT 
TTGCGAGGAG AACACGATGA GGCAGATGGA GGAGTCAACT GGGGCGAATT CAGAGGGAAT 
GATTACTCAC TGAAAGTGTC TGAAATTAAG TTCCGGCCAC AATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_012825212.1
CDS66..1010
Translation

Target ORF information:

RefSeq Version XM_012969758.2
Organism Xenopus tropicalis(tropical clawed frog)
Definition Xenopus tropicalis ficolin (collagen/fibrinogen domain containing) 1 (fcn1), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_012969758.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
ATGGAAAAAC CACCGACCAT GGGAATTTCT CTTCCAAGTC TCTTTTGTCT GATTCTTGTT 
GGGATCACAA TATCCTGCCG TGCCCAAGAC ACGTGTCCTG ATGTAAAACT CATTGGAGCT 
GGAGAATCAG CAAGAATGGC CATTGTAAGA GGGTGTCTGG GGTCTACAGG ATCCACTGGG 
CAAAAGGGAG AAGCAGGGAC ACAAGGAACC AAAGGAGACC CTGGAATCCC TGGAATGTTG 
GGCCCCCGGG GTGAGAAAGG AGACATTGGG CGTCCTGGAC TCTTGGGGCC ACTTGGCAAG 
AAAACTCCCA AGAACTGTGT GGAGCTGCTC AATAATGGAG CCACGCTCAC CGGCTGGTAC 
ACAGTCTCTC CGGATGGTAA TAAGCCTATA AAGGTTCTCT GTGACATGGA TACGGATGGG 
GGGGGATGGA TAGTGTTTCA GAGACGAGTG GACGGTTCTG TGGATTTCTA CAGAGACTGG 
AAATCCTACA AACAAGGTTT TGGCAGCCAA GTGGGCGAGT TCTGGTTGGG AAATGAGAAC 
ATTCACCTCC TTACGTCCTC AGGGAATTTC CAACTGCGCT TCGACCTGGA GGATTTTGAC 
AACAATCGAA AGTACGCCAC CTACAGCCAA TTCCGACTGG AGGGAGAGTC TCAGAAATAC 
ACCCTACGTT TTGGGGAATT CACTGGGGGC CCTGCAGGGG ACTCCTTGTC TTCTCACAAC 
AACAAAGCTT TCCAAACAAA GGATGTGGAT AATGATGAGA GTGATAGTAA CTGTGCAGAG 
TCATTCAAAG GGGCCTGGTG GTATCACGAT TGTTACTCCT CCTGTCTGAA TGGGGAATAT 
TTGCGAGGAG AACACGATGA GGCAGATGGA GGAGTCAACT GGGGCGAATT CAGAGGGAAT 
GATTACTCAC TGAAAGTGTC TGAAATTAAG TTCCGGCCAC AATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative.
Developmental dynamics : an official publication of the American Association of Anatomists225(4)384-91(2002 Dec)
Klein SL,Strausberg RL,Wagner L,Pontius J,Clifton SW,Richardson P