Gene Symbol | chrd.1 |
Entrez Gene ID | 549011 |
Full Name | chordin, gene 1 |
Synonyms | X-chordin,chd,chrd |
General protein information |
|
Gene Type | protein-coding |
Organism | Xenopus tropicalis(tropical clawed frog) |
ORF » Species Summary » Xenopus tropicalis » chrd.1 cDNA ORF clone
Gene Symbol | chrd.1 |
Entrez Gene ID | 549011 |
Full Name | chordin, gene 1 |
Synonyms | X-chordin,chd,chrd |
General protein information |
|
Gene Type | protein-coding |
Organism | Xenopus tropicalis(tropical clawed frog) |
mRNA | Protein | Name |
---|---|---|
XM_012962976.2 | XP_012818430.1 | chordin isoform X1 |
NM_001142657.1 | NP_001136129.1 | chordin precursor |
XM_012962977.3 | XP_012818431.1 | chordin isoform X2 |
XM_012962977.2 | XP_012818431.1 | chordin isoform X2 |
XM_012962976.3 | XP_012818430.1 | chordin isoform X1 |
Canis lupus familiaris (dog) | CHRD | XP_005639840.1 |
Danio rerio (zebrafish) | chd | NP_571048.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP000472 | XP_310620.4 |
Bos taurus (cattle) | CHRD | XP_002684938.2 |
Drosophila melanogaster (fruit fly) | sog | NP_001259578.1 |
Homo sapiens (human) | CHRD | NP_003732.2 |
Mus musculus (house mouse) | Chrd | NP_001264970.1 |
Gallus gallus (chicken) | CHRD | NP_990311.1 |
Pan troglodytes (chimpanzee) | CHRD | XP_516917.3 |
CHRD | XP_001097729.2 | |
Rattus norvegicus (Norway rat) | Chrd | NP_476475.1 |
Xenopus tropicalis (tropical clawed frog) | chrd | NP_001136129.1 |
Twisted gastrulation is required for forebrain specification and cooperates with Chordin to inhibit BMP signaling during X. tropicalis gastrulation.
Wills A, Harland RM, Khokha MK
Developmental biology289(1)166-78(2006 Jan)
The novel Smad-interacting protein Smicl regulates Chordin expression in the Xenopus embryo.
Collart C, Verschueren K, Rana A, Smith JC, Huylebroeck D
Development (Cambridge, England)132(20)4575-86(2005 Oct)
Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative.
Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW, Richardson P
Developmental dynamics : an official publication of the American Association of Anatomists225(4)384-91(2002 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Tsg acts cooperatively with chordin as a BMP antagonist in the context of the frog gastrula, and it acts to establish dorsal structures and particularly forebrain tissue during development.
Title: Twisted gastrulation is required for forebrain specification and cooperates with Chordin to inhibit BMP signaling during X. tropicalis gastrulation.
complex containing Smicl and the newly induced Xlim1 induces expression of Chordin
Title: The novel Smad-interacting protein Smicl regulates Chordin expression in the Xenopus embryo.
The following chrd.1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the chrd.1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OXa22831 | |
Clone ID Related Accession (Same CDS sequence) | NM_001142657.1 | |
Accession Version | NM_001142657.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2826bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-21 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | chordin precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC168603.1. ##Evidence-Data-START## Transcript exon combination :: BC168603.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00028290, SAMD00028291 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCTTTGTT CCCCCATCTT ACTTCTGTGG ACCCTGTGGA TTATGGCTGT GGATTGCTCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001136129.1 |
CDS | 286..3111 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001142657.1 |
1 | ATGCTTTGTT CCCCCATCTT ACTTCTGTGG ACCCTGTGGA TTATGGCTGT GGATTGCTCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa27624 | |
Clone ID Related Accession (Same CDS sequence) | XM_012962976.2 | |
Accession Version | XM_012962976.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2829bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-09-07 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | chordin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030681.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_012962976.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTTTGTT CCCCCATCTT ACTTCTGTGG ACCCTGTGGA TTATGGCTGT GGATTGCTCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012818430.1 |
CDS | 312..3140 |
Translation |
Target ORF information:
Target ORF information:
|
XM_012962976.2 |
1 | ATGCTTTGTT CCCCCATCTT ACTTCTGTGG ACCCTGTGGA TTATGGCTGT GGATTGCTCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa27625 | |
Clone ID Related Accession (Same CDS sequence) | XM_012962977.2 | |
Accession Version | XM_012962977.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2826bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-09-07 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | chordin isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030681.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_012962977.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTTTGTT CCCCCATCTT ACTTCTGTGG ACCCTGTGGA TTATGGCTGT GGATTGCTCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012818431.1 |
CDS | 312..3137 |
Translation |
Target ORF information:
Target ORF information:
|
XM_012962977.2 |
1 | ATGCTTTGTT CCCCCATCTT ACTTCTGTGG ACCCTGTGGA TTATGGCTGT GGATTGCTCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa58014 | |
Clone ID Related Accession (Same CDS sequence) | XM_012962976.3 | |
Accession Version | XM_012962976.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2829bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | chordin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030681.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2019 this sequence version replaced XM_012962976.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTTTGTT CCCCCATCTT ACTTCTGTGG ACCCTGTGGA TTATGGCTGT GGATTGCTCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012818430.1 |
CDS | 468..3296 |
Translation |
Target ORF information:
Target ORF information:
|
XM_012962976.3 |
1 | ATGCTTTGTT CCCCCATCTT ACTTCTGTGG ACCCTGTGGA TTATGGCTGT GGATTGCTCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OXa58015 | |
Clone ID Related Accession (Same CDS sequence) | XM_012962977.3 | |
Accession Version | XM_012962977.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2826bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-17 | |
Organism | Xenopus tropicalis(tropical clawed frog) | |
Product | chordin isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030681.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2019 this sequence version replaced XM_012962977.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTTTGTT CCCCCATCTT ACTTCTGTGG ACCCTGTGGA TTATGGCTGT GGATTGCTCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_012818431.1 |
CDS | 447..3272 |
Translation |
Target ORF information:
Target ORF information:
|
XM_012962977.3 |
1 | ATGCTTTGTT CCCCCATCTT ACTTCTGTGG ACCCTGTGGA TTATGGCTGT GGATTGCTCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Twisted gastrulation is required for forebrain specification and cooperates with Chordin to inhibit BMP signaling during X. tropicalis gastrulation. |
The novel Smad-interacting protein Smicl regulates Chordin expression in the Xenopus embryo. |
Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. |