Gene Symbol | LOC100279000 |
Entrez Gene ID | 100279000 |
Full Name | CTC-interacting domain 7 |
Synonyms | GRMZM2G017254 |
Gene Type | protein-coding |
Organism | Zea mays |
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ORF » Species Summary » Zea mays » LOC100279000 cDNA ORF clone
mRNA | Protein | Name |
---|---|---|
XM_008674065.3 | XP_008672287.1 | uncharacterized protein LOC100279000 isoform X1 |
XM_008674065.2 | XP_008672287.1 | uncharacterized protein LOC100279000 isoform X1 |
XM_008674072.3 | XP_008672294.1 | uncharacterized protein LOC100279000 isoform X1 |
NM_001152076.1 | NP_001145548.1 | uncharacterized protein LOC100279000 |
XM_008674074.2 | XP_008672296.1 | uncharacterized protein LOC100279000 isoform X2 |
NM_001360928.1 | NP_001347857.1 | uncharacterized protein LOC100279000 |
XM_008674072.2 | XP_008672294.1 | uncharacterized protein LOC100279000 isoform X1 |
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y
PLoS genetics5(11)e1000740(2009 Nov)
Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing.
Vega-Arregu?n JC, Ibarra-Laclette E, Jim?nez-Moraila B, Mart?nez O, Vielle-Calzada JP, Herrera-Estrella L, Herrera-Estrella A
BMC genomics10299(2009 Jul)
Insights into corn genes derived from large-scale cDNA sequencing.
Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA
Plant molecular biology69(1-2)179-94(2009 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100279000 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100279000 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OZa10903 | |
Clone ID Related Accession (Same CDS sequence) | NM_001152076.1 | |
Accession Version | NM_001152076.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 378bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-04-22 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100279000 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU976281.1. ##Evidence-Data-START## Transcript exon combination :: EU976281.1, SRR3147046.13482.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780084, SAMN00780085 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGGAAACA ACCCTTTAGC AAAGGATCTA ACATTGAAGG AGCTATACAG TATACAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001145548.1 |
CDS | 69..446 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGGAAACA ACCCTTTAGC AAAGGATCTA ACATTGAAGG AGCTATACAG TATACAAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27343 | |
Clone ID Related Accession (Same CDS sequence) | XM_008674065.3 , XM_008674065.2 , XM_008674072.3 , NM_001360928.1 , XM_008674072.2 | |
Accession Version | NM_001360928.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1548bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-02-17 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100279000 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BT064487.1. On Feb 18, 2018 this sequence version replaced XM_008674065.3. ##Evidence-Data-START## Transcript exon combination :: BT064487.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780084, SAMN00780085 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001347857.1 |
CDS | 342..1889 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27343 | |
Clone ID Related Accession (Same CDS sequence) | XM_008674065.3 , XM_008674065.2 , XM_008674072.3 , NM_001360928.1 , XM_008674072.2 | |
Accession Version | XM_008674065.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1548bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-12-17 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100279000 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_008674065.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008672287.1 |
CDS | 356..1903 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27343 | |
Clone ID Related Accession (Same CDS sequence) | XM_008674065.3 , XM_008674065.2 , XM_008674072.3 , NM_001360928.1 , XM_008674072.2 | |
Accession Version | XM_008674065.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1548bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-03-19 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100279000 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008674065.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008672287.1 |
CDS | 357..1904 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27343 | |
Clone ID Related Accession (Same CDS sequence) | XM_008674065.3 , XM_008674065.2 , XM_008674072.3 , NM_001360928.1 , XM_008674072.2 | |
Accession Version | XM_008674072.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1548bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-12-17 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100279000 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_008674072.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008672294.1 |
CDS | 268..1815 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27343 | |
Clone ID Related Accession (Same CDS sequence) | XM_008674065.3 , XM_008674065.2 , XM_008674072.3 , NM_001360928.1 , XM_008674072.2 | |
Accession Version | XM_008674072.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1548bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-03-19 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100279000 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008674072.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008672294.1 |
CDS | 270..1817 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OZa27344 | |
Clone ID Related Accession (Same CDS sequence) | XM_008674074.2 | |
Accession Version | XM_008674074.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1545bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-12-17 | |
Organism | Zea mays | |
Product | uncharacterized protein LOC100279000 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008674074.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008672296.1 |
CDS | 454..1998 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCCATAG AAGAGAGGAA GATAAGTATG ATAAGCAAGA GCACTGCACT AAATCCAAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. |
Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. |
Insights into corn genes derived from large-scale cDNA sequencing. |