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Structural Basis for Recognition of the FLAG-tag by Anti-FLAG M2

J Mol Biol. 2024-06; 
J Wouter Beugelink, Els Sweep, Bert J C Janssen, Joost Snijder, Matti F Pronker
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Abstract

The FLAG-tag/anti-FLAG system is a widely used biochemical tool for protein detection and purification. Anti-FLAG M2 is the most popular antibody against the FLAG-tag, due to its ease of use, versatility, and availability in pure form or as bead conjugate. M2 binds N-terminal, C-terminal and internal FLAG-tags and binding is calcium-independent, but the molecular basis for the FLAG-tag specificity and recognition remains unresolved. Here we present an atomic resolution (1.17 Å) structure of the FLAG peptide in complex with the Fab of anti-FLAG M2, revealing key binding determinants. Five of the eight FLAG peptide residues form direct interactions with paratope residues. The FLAG peptide adopts a 3 helix confo... More

Keywords

X-ray crystallography, antibody, protein purification, structural biology, surface plasmon resonance