Gene Symbol | Zscan22 |
Entrez Gene ID | 232878 |
Full Name | zinc finger and SCAN domain containing 22 |
Synonyms | AW227621,D530006B18Rik,Hkr2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Zscan22 cDNA ORF clone
gRNAs
Gene Symbol | Zscan22 |
Entrez Gene ID | 232878 |
Full Name | zinc finger and SCAN domain containing 22 |
Synonyms | AW227621,D530006B18Rik,Hkr2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001001447.3 | NP_001001447.1 | zinc finger and SCAN domain-containing protein 22 isoform a |
XM_030242425.1 | XP_030098285.1 | zinc finger and SCAN domain-containing protein 22 isoform X1 |
NM_001290442.1 | NP_001277371.1 | zinc finger and SCAN domain-containing protein 22 isoform c |
NM_001290438.1 | NP_001277367.1 | zinc finger and SCAN domain-containing protein 22 isoform a |
NM_001290441.1 | NP_001277370.1 | zinc finger and SCAN domain-containing protein 22 isoform c |
XM_030242427.1 | XP_030098287.1 | zinc finger and SCAN domain-containing protein 22 isoform X2 |
NM_001290440.1 | NP_001277369.1 | zinc finger and SCAN domain-containing protein 22 isoform b |
NM_001290436.1 | NP_001277365.1 | zinc finger and SCAN domain-containing protein 22 isoform a |
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58.
Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S, Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N, Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y, Okado H, Hashimoto M, Asahara H
Developmental cell17(6)836-48(2009 Dec)
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC, Babbitt PC, Ferrin TE
Nucleic acids research31(1)278-81(2003 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Zscan22 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Zscan22 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu13847 | |
Clone ID Related Accession (Same CDS sequence) | NM_001001447.3 , XM_030242425.1 , NM_001290438.1 , NM_001290436.1 | |
Accession Version | XM_030242425.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1491bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | zinc finger and SCAN domain-containing protein 22 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCATCC CCAAGAGCCC TCTGAGCCCA GTACTCTGGG AACAGGATAG CTTCCTTCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030098285.1 |
CDS | 2845..4335 |
Translation |
Target ORF information:
Target ORF information:
|
XM_030242425.1 |
1 | ATGGCCATCC CCAAGAGCCC TCTGAGCCCA GTACTCTGGG AACAGGATAG CTTCCTTCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu16860 | |
Clone ID Related Accession (Same CDS sequence) | NM_001290442.1 , NM_001290441.1 , XM_030242427.1 | |
Accession Version | XM_030242427.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1014bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | zinc finger and SCAN domain-containing protein 22 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGACTG AAACTGTCAT GGGAAGCGTT TTGCCAAAAT CTACCCTTGC CCACACTTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030098287.1 |
CDS | 1381..2394 |
Translation |
Target ORF information:
Target ORF information:
|
XM_030242427.1 |
1 | ATGGCGACTG AAACTGTCAT GGGAAGCGTT TTGCCAAAAT CTACCCTTGC CCACACTTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu13840 | |
Clone ID Related Accession (Same CDS sequence) | NM_001290440.1 | |
Accession Version | NM_001290440.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1146bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-25 | |
Organism | Mus musculus(house mouse) | |
Product | zinc finger and SCAN domain-containing protein 22 isoform b | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BB849089.1 and AK163694.1. On Mar 13, 2014 this sequence version replaced XM_006539799.1. Transcript Variant: This variant (4) uses an alternate splice junction at the 3' end of the first exon and lacks an alternate exon compared to variant 1. The resulting isoform (b) has a shorter and distinct N-terminus compared to isoform a. ##Evidence-Data-START## Transcript exon combination :: BB849089.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTGTGTGC GTCACCAGGA CGCCTTTGGA AGTGTCCGCT GGGAGTTCTG GAGACCCGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001277369.1 |
CDS | 12..1157 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001290440.1 |
1 | ATGTGTGTGC GTCACCAGGA CGCCTTTGGA AGTGTCCGCT GGGAGTTCTG GAGACCCGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu13847 | |
Clone ID Related Accession (Same CDS sequence) | NM_001001447.3 , XM_030242425.1 , NM_001290438.1 , NM_001290436.1 | |
Accession Version | NM_001001447.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1491bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-25 | |
Organism | Mus musculus(house mouse) | |
Product | zinc finger and SCAN domain-containing protein 22 isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BB849089.1, AK052559.1 and AK163694.1. On Mar 13, 2014 this sequence version replaced NM_001001447.2. Transcript Variant: This variant (2) differs in the 5' UTR compared to variant (1). Variants 1, 2, and 3 all encode the same isoform (a). ##Evidence-Data-START## Transcript exon combination :: AK052559.1, AK085207.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCCATCC CCAAGAGCCC TCTGAGCCCA GTACTCTGGG AACAGGATAG CTTCCTTCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001001447.1 |
CDS | 218..1708 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001001447.3 |
1 | ATGGCCATCC CCAAGAGCCC TCTGAGCCCA GTACTCTGGG AACAGGATAG CTTCCTTCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu13847 | |
Clone ID Related Accession (Same CDS sequence) | NM_001001447.3 , XM_030242425.1 , NM_001290438.1 , NM_001290436.1 | |
Accession Version | NM_001290438.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1491bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-25 | |
Organism | Mus musculus(house mouse) | |
Product | zinc finger and SCAN domain-containing protein 22 isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BB849089.1, AK078591.1 and AK163694.1. On Mar 13, 2014 this sequence version replaced XM_006539798.1. Transcript Variant: This variant (3) differs in the 5' UTR compared to variant (1). Variants 1, 2, and 3 all encode the same isoform (a). ##Evidence-Data-START## Transcript exon combination :: AK078591.1, BB623755.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCCATCC CCAAGAGCCC TCTGAGCCCA GTACTCTGGG AACAGGATAG CTTCCTTCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001277367.1 |
CDS | 152..1642 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001290438.1 |
1 | ATGGCCATCC CCAAGAGCCC TCTGAGCCCA GTACTCTGGG AACAGGATAG CTTCCTTCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu13847 | |
Clone ID Related Accession (Same CDS sequence) | NM_001001447.3 , XM_030242425.1 , NM_001290438.1 , NM_001290436.1 | |
Accession Version | NM_001290436.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1491bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-25 | |
Organism | Mus musculus(house mouse) | |
Product | zinc finger and SCAN domain-containing protein 22 isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BB849089.1, BB871911.1, AC107704.8, AK052559.1 and AK163694.1. On Mar 13, 2014 this sequence version replaced XM_006539797.1. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). Variants 1, 2, and 3 all encode the same isoform (a). ##Evidence-Data-START## Transcript exon combination :: BU512018.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCCATCC CCAAGAGCCC TCTGAGCCCA GTACTCTGGG AACAGGATAG CTTCCTTCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001277365.1 |
CDS | 255..1745 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001290436.1 |
1 | ATGGCCATCC CCAAGAGCCC TCTGAGCCCA GTACTCTGGG AACAGGATAG CTTCCTTCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu16860 | |
Clone ID Related Accession (Same CDS sequence) | NM_001290442.1 , NM_001290441.1 , XM_030242427.1 | |
Accession Version | NM_001290442.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1014bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-25 | |
Organism | Mus musculus(house mouse) | |
Product | zinc finger and SCAN domain-containing protein 22 isoform c | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BB849089.1, AK163694.1 and AC107704.8. On Mar 13, 2014 this sequence version replaced XM_006539800.1. Transcript Variant: This variant (6) lacks an alternate exon compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 5 and 6 both encode the same isoform (c). ##Evidence-Data-START## Transcript exon combination :: AK163694.1, SRR1660821.55283.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCGACTG AAACTGTCAT GGGAAGCGTT TTGCCAAAAT CTACCCTTGC CCACACTTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001277371.1 |
CDS | 247..1260 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001290442.1 |
1 | ATGGCGACTG AAACTGTCAT GGGAAGCGTT TTGCCAAAAT CTACCCTTGC CCACACTTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu16860 | |
Clone ID Related Accession (Same CDS sequence) | NM_001290442.1 , NM_001290441.1 , XM_030242427.1 | |
Accession Version | NM_001290441.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1014bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-24 | |
Organism | Mus musculus(house mouse) | |
Product | zinc finger and SCAN domain-containing protein 22 isoform c | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BB849089.1, BY288068.1 and AK163694.1. On Mar 13, 2014 this sequence version replaced XM_006539801.1. Transcript Variant: This variant (5) uses an alternate splice junction at the 3' end of the first exon and lacks an alternate exon compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 5 and 6 both encode the same isoform (c). ##Evidence-Data-START## Transcript exon combination :: SRR1660815.136755.1, BB851250.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849380 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCGACTG AAACTGTCAT GGGAAGCGTT TTGCCAAAAT CTACCCTTGC CCACACTTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001277370.1 |
CDS | 210..1223 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001290441.1 |
1 | ATGGCGACTG AAACTGTCAT GGGAAGCGTT TTGCCAAAAT CTACCCTTGC CCACACTTGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. |
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. |