| Gene Symbol | EDA9 |
| Entrez Gene ID | 829568 |
| Full Name | D-3-phosphoglycerate dehydrogenase |
| Synonyms | F10M10.7,PGDH1,embryo sac development arrest 9,phosphoglycerate dehydrogenase 1 |
| Gene Type | protein-coding |
| Organism | Arabidopsis thaliana(thale cress) |
IVD Raw Materials
ORF » Species Summary » Arabidopsis thaliana » EDA9 cDNA ORF clone
| Gene Symbol | EDA9 |
| Entrez Gene ID | 829568 |
| Full Name | D-3-phosphoglycerate dehydrogenase |
| Synonyms | F10M10.7,PGDH1,embryo sac development arrest 9,phosphoglycerate dehydrogenase 1 |
| Gene Type | protein-coding |
| Organism | Arabidopsis thaliana(thale cress) |
| mRNA | Protein | Name |
|---|---|---|
| NM_119583.4 | NP_195146.1 | D-3-phosphoglycerate dehydrogenase |
| Arabidopsis thaliana (thale cress) | EDA9 | NP_195146.1 |
| Pan troglodytes (chimpanzee) | PHGDH | NP_001092041.1 |
| Canis lupus familiaris (dog) | LOC607890 | XP_849835.1 |
| Gallus gallus (chicken) | PHGDH | XP_422226.2 |
| Drosophila melanogaster (fruit fly) | CG6287 | NP_609496.1 |
| Caenorhabditis elegans (roundworm) | CELE_C31C9.2 | NP_496868.1 |
| Oryza sativa (rice) | Os04g0650800 | NP_001054094.1 |
| Anopheles gambiae (African malaria mosquito) | AgaP_AGAP008849 | XP_319591.2 |
| Xenopus tropicalis (tropical clawed frog) | phgdh | NP_001015929.1 |
| Homo sapiens (human) | PHGDH | NP_006614.2 |
| Bos taurus (cattle) | PHGDH | NP_001030189.1 |
| Rattus norvegicus (Norway rat) | Phgdh | NP_113808.1 |
| Magnaporthe oryzae (rice blast fungus) | MGG_07207 | XP_003715419.1 |
| PHGDH | XP_001114128.1 | |
| Canis lupus familiaris (dog) | PHGDH | XP_003639659.1 |
| Canis lupus familiaris (dog) | LOC608055 | XP_850035.1 |
| Mus musculus (house mouse) | Phgdh | NP_058662.2 |
| Danio rerio (zebrafish) | phgdh | NP_955871.1 |
Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.
Mayer K, Sch?ller C, Wambutt R, Murphy G, Volckaert G, Pohl T, D?sterh?ft A, Stiekema W, Entian KD, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, M?ller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham SA, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang YJ, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, K?tter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream MA, Lyne M, Benes V, Rechmann S, Borkova D, Bl?cker H, Scharfe M, Grimm M, L?hnert TH, Dose S, de Haan M, Maarse A, Sch?fer M, M?ller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, M?ndlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes HW, Stocker S, Zaccaria P, Bevan M, Wilson RK, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby IK, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie WR
Nature402(6763)769-77(1999 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
PGDH1 is essential for Arabidopsis development.
Title: Arabidopsis phosphoglycerate dehydrogenase1 of the phosphoserine pathway is essential for development and required for ammonium assimilation and tryptophan biosynthesis.
Genetic and molecular evidence were provided for the essential role of EDA9 for embryo and pollen development.
Title: Identification of the phosphoglycerate dehydrogenase isoform EDA9 as the essential gene for embryo and male gametophyte development in Arabidopsis.
Data indicate that 3-phosphoglycerate dehydrogenases PGDH (At1g17745) and EDA9 (At4g34200) were expressed preferentially in roots while 3-PGDH (At3g19480) was expressed mainly in the aerial parts and was not expressed or very poorly in roots.
Title: Functional characterization of the plastidial 3-phosphoglycerate dehydrogenase family in Arabidopsis.
The following EDA9 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the EDA9 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OAb17143 | |
| Clone ID Related Accession (Same CDS sequence) | NM_119583.4 | |
| Accession Version | NM_119583.4 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1812bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-02-13 | |
| Organism | Arabidopsis thaliana(thale cress) | |
| Product | D-3-phosphoglycerate dehydrogenase | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003075). On Sep 12, 2016 this sequence version replaced NM_119583.3. | |
1 | ATGTCAGCCA CCGCCGCCGC CTCCTCCTCG ATCGCCGTTG CCACCAACTC TCTCAGGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_195146.1 |
| CDS | 106..1917 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_119583.4 |
1 | ATGTCAGCCA CCGCCGCCGC CTCCTCCTCG ATCGCCGTTG CCACCAACTC TCTCAGGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. |