Gene Symbol |
ATP6V1D |
Entrez Gene ID |
404152 |
Full Name |
ATPase H+ transporting V1 subunit D |
Synonyms |
VATD |
General protein information |
- Preferred Names
ATPase H+ transporting V1 subunit D
Names
V-type proton ATPase subunit D V-ATPase 28 kDa accessory protein V-ATPase subunit D vacuolar H-ATPase subunit D vacuolar proton pump subunit D
|
Gene Type |
protein-coding |
Organism |
Bos taurus(cattle) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
NM_001075141.2 |
NP_001068609.2 |
V-type proton ATPase subunit D isoform 1 |
NM_001257088.1 |
NP_001244017.1 |
V-type proton ATPase subunit D isoform 2 |
Bos taurus (cattle) |
ATP6V1D |
NP_001068609.2 |
Gallus gallus (chicken) |
ATP6V1D |
NP_001264368.1 |
Kluyveromyces lactis |
KLLA0A01991g |
XP_451088.1 |
Homo sapiens (human) |
ATP6V1D |
NP_057078.1 |
Mus musculus (house mouse) |
Atp6v1d |
NP_076210.1 |
Drosophila melanogaster (fruit fly) |
Vha36-1 |
NP_651987.1 |
Schizosaccharomyces pombe (fission yeast) |
vma8 |
NP_588513.1 |
Neurospora crassa |
NCU08035 |
XP_962705.2 |
Arabidopsis thaliana (thale cress) |
AT3G58730 |
NP_191432.1 |
Oryza sativa (rice) |
Os04g0643100 |
NP_001054048.1 |
Pan troglodytes (chimpanzee) |
ATP6V1D |
XP_001136552.1 |
Saccharomyces cerevisiae (baker's yeast) |
VMA8 |
NP_010863.1 |
Rattus norvegicus (Norway rat) |
Atp6v1d |
NP_955418.1 |
Danio rerio (zebrafish) |
atp6v1d |
NP_001161426.1 |
Caenorhabditis elegans (roundworm) |
vha-14 |
NP_499094.1 |
Eremothecium gossypii |
AGOS_AAR130C |
NP_982672.1 |
|
ATP6V1D |
XP_001106329.1 |
Canis lupus familiaris (dog) |
ATP6V1D |
XP_537484.2 |
Anopheles gambiae (African malaria mosquito) |
AgaP_AGAP010298 |
XP_318202.3 |
Magnaporthe oryzae (rice blast fungus) |
MGG_07086 |
XP_003715275.1 |
Xenopus tropicalis (tropical clawed frog) |
atp6v1d |
NP_001017075.1 |
Related articles in PubMed
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Mar?ais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL
Genome biology10(4)R42(2009)
Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray.
Ishiwata H, Katsuma S, Kizaki K, Patel OV, Nakano H, Takahashi T, Imai K, Hirasawa A, Shiojima S, Ikawa H, Suzuki Y, Tsujimoto G, Izaike Y, Todoroki J, Hashizume K
Molecular reproduction and development65(1)9-18(2003 May)
A bovine cDNA and a yeast gene (VMA8) encoding the subunit D of the vacuolar H(+)-ATPase.
Nelson H, Mandiyan S, Nelson N
Proceedings of the National Academy of Sciences of the United States of America92(2)497-501(1995 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following ATP6V1D gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ATP6V1D cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
OBa44820 |
Clone ID Related Accession (Same CDS sequence) |
NM_001257088.1
|
Accession Version |
NM_001257088.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 579bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-06-07 |
Organism |
Bos taurus(cattle) |
Product |
V-type proton ATPase subunit D isoform 2 |
Comment |
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH151848.1, FE012554.1 and EV734895.1.
Transcript Variant: This variant (2) lacks an exon in the 5' coding region and uses a downstream in-frame start codon, compared to variant 1. The encoded isoform (2) is shorter at the N-terminus, compared to isoform 1.
##Evidence-Data-START##
Transcript exon combination :: FE012554.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMN05861800 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
|
1 61 121 181 241 301 361 421 481 541
| ATGTTGATGG GTGAAGTGAT GAGAGAAGCT GCCTTTTCAC TTGCTGAGGC CAAGTTCACA GCAGGGGACT TCAGCACCAC AGTTATCCAA AATGTAAATA AGGCCCAAGT GAAGATTAGA GCAAAGAAAG ATAATGTAGC AGGTGTTACA TTGCCAGTAT TTGAACATTA TCATGAAGGA ACTGACAGTT ATGAACTGAC TGGTTTAGCC AGAGGTGGGG AACAGTTGGC TAAACTGAAG AGGAATTATG CCAAAGCAGT GGAACTACTG GTGGAACTGG CTTCACTGCA GACGTCCTTT GTTACTTTGG ATGAAGCTAT TAAGATAACC AACAGGCGTG TAAACGCTAT TGAACATGTC ATCATTCCCC GGATTGAACG TACCCTTGCT TATATCATCA CAGAGCTGGA TGAAAGAGAG CGAGAGGAGT TCTACAGATT AAAGAAAATA CAGGAGAAGA AAAAGATTCT CAAGGAGAAG TCTGATAAGG ACTTGGAGCA ACGGAGGGCA GCCGGAGAGG TGATAGAGCC TGCTAATCTC CTGGCTGAAG AGAAGGATGA AGATCTTCTG TTTGAATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001244017.1 |
CDS | 185..763 |
Translation | |
Target ORF information:
RefSeq Version | NM_001257088.1 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus ATPase H+ transporting V1 subunit D (ATP6V1D), transcript variant 2, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001257088.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541
| ATGTTGATGG GTGAAGTGAT GAGAGAAGCT GCCTTTTCAC TTGCTGAGGC CAAGTTCACA GCAGGGGACT TCAGCACCAC AGTTATCCAA AATGTAAATA AGGCCCAAGT GAAGATTAGA GCAAAGAAAG ATAATGTAGC AGGTGTTACA TTGCCAGTAT TTGAACATTA TCATGAAGGA ACTGACAGTT ATGAACTGAC TGGTTTAGCC AGAGGTGGGG AACAGTTGGC TAAACTGAAG AGGAATTATG CCAAAGCAGT GGAACTACTG GTGGAACTGG CTTCACTGCA GACGTCCTTT GTTACTTTGG ATGAAGCTAT TAAGATAACC AACAGGCGTG TAAACGCTAT TGAACATGTC ATCATTCCCC GGATTGAACG TACCCTTGCT TATATCATCA CAGAGCTGGA TGAAAGAGAG CGAGAGGAGT TCTACAGATT AAAGAAAATA CAGGAGAAGA AAAAGATTCT CAAGGAGAAG TCTGATAAGG ACTTGGAGCA ACGGAGGGCA GCCGGAGAGG TGATAGAGCC TGCTAATCTC CTGGCTGAAG AGAAGGATGA AGATCTTCTG TTTGAATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OBa44861 |
Clone ID Related Accession (Same CDS sequence) |
NM_001075141.2
|
Accession Version |
NM_001075141.2 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 744bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-06-07 |
Organism |
Bos taurus(cattle) |
Product |
V-type proton ATPase subunit D isoform 1 |
Comment |
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH151848.1 and EV734895.1. On Mar 10, 2012 this sequence version replaced NM_001075141.1.
Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
##Evidence-Data-START##
Transcript exon combination :: EH151848.1, DV778082.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMN05861800 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
|
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCGGGCA AAGACCGAAT TGAAATCTTT CCCTCGCGAA TGGCACAGAC CATCATGAAG GCTCGGTTAA AAGGAGCACA GACAGGTCGA AACCTCCTGA AGAAAAAATC TGATGCCTTA ACTCTTCGAT TTCGACAGAT CCTTAAGAAG ATAATAGAGA CTAAAATGTT GATGGGTGAA GTGATGAGAG AAGCTGCCTT TTCACTTGCT GAGGCCAAGT TCACAGCAGG GGACTTCAGC ACCACAGTTA TCCAAAATGT AAATAAGGCC CAAGTGAAGA TTAGAGCAAA GAAAGATAAT GTAGCAGGTG TTACATTGCC AGTATTTGAA CATTATCATG AAGGAACTGA CAGTTATGAA CTGACTGGTT TAGCCAGAGG TGGGGAACAG TTGGCTAAAC TGAAGAGGAA TTATGCCAAA GCAGTGGAAC TACTGGTGGA ACTGGCTTCA CTGCAGACGT CCTTTGTTAC TTTGGATGAA GCTATTAAGA TAACCAACAG GCGTGTAAAC GCTATTGAAC ATGTCATCAT TCCCCGGATT GAACGTACCC TTGCTTATAT CATCACAGAG CTGGATGAAA GAGAGCGAGA GGAGTTCTAC AGATTAAAGA AAATACAGGA GAAGAAAAAG ATTCTCAAGG AGAAGTCTGA TAAGGACTTG GAGCAACGGA GGGCAGCCGG AGAGGTGATA GAGCCTGCTA ATCTCCTGGC TGAAGAGAAG GATGAAGATC TTCTGTTTGA ATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001068609.2 |
CDS | 138..881 |
Translation | |
Target ORF information:
RefSeq Version | NM_001075141.2 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus ATPase H+ transporting V1 subunit D (ATP6V1D), transcript variant 1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001075141.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721
| ATGTCGGGCA AAGACCGAAT TGAAATCTTT CCCTCGCGAA TGGCACAGAC CATCATGAAG GCTCGGTTAA AAGGAGCACA GACAGGTCGA AACCTCCTGA AGAAAAAATC TGATGCCTTA ACTCTTCGAT TTCGACAGAT CCTTAAGAAG ATAATAGAGA CTAAAATGTT GATGGGTGAA GTGATGAGAG AAGCTGCCTT TTCACTTGCT GAGGCCAAGT TCACAGCAGG GGACTTCAGC ACCACAGTTA TCCAAAATGT AAATAAGGCC CAAGTGAAGA TTAGAGCAAA GAAAGATAAT GTAGCAGGTG TTACATTGCC AGTATTTGAA CATTATCATG AAGGAACTGA CAGTTATGAA CTGACTGGTT TAGCCAGAGG TGGGGAACAG TTGGCTAAAC TGAAGAGGAA TTATGCCAAA GCAGTGGAAC TACTGGTGGA ACTGGCTTCA CTGCAGACGT CCTTTGTTAC TTTGGATGAA GCTATTAAGA TAACCAACAG GCGTGTAAAC GCTATTGAAC ATGTCATCAT TCCCCGGATT GAACGTACCC TTGCTTATAT CATCACAGAG CTGGATGAAA GAGAGCGAGA GGAGTTCTAC AGATTAAAGA AAATACAGGA GAAGAAAAAG ATTCTCAAGG AGAAGTCTGA TAAGGACTTG GAGCAACGGA GGGCAGCCGG AGAGGTGATA GAGCCTGCTA ATCTCCTGGC TGAAGAGAAG GATGAAGATC TTCTGTTTGA ATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
 |
A whole-genome assembly of the domestic cow, Bos taurus.
Genome biology10(4)R42(2009)
Zimin AV,Delcher AL,Florea L,Kelley DR,Schatz MC,Puiu D,Hanrahan F,Pertea G,Van Tassell CP,Sonstegard TS,Mar?ais G,Roberts M,Subramanian P,Yorke JA,Salzberg SL |
 |
Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray.
Molecular reproduction and development65(1)9-18(2003 May)
Ishiwata H,Katsuma S,Kizaki K,Patel OV,Nakano H,Takahashi T,Imai K,Hirasawa A,Shiojima S,Ikawa H,Suzuki Y,Tsujimoto G,Izaike Y,Todoroki J,Hashizume K |