Gene Symbol |
CXCL12 |
Entrez Gene ID |
613811 |
Full Name |
C-X-C motif chemokine ligand 12 |
Synonyms |
SDF1 |
General protein information |
- Preferred Names
C-X-C motif chemokine ligand 12
Names
stromal cell-derived factor 1 chemokine (C-X-C motif) ligand 12 (stromal cell-derived factor 1) chemokine C-X-C motif ligand 12
|
Gene Type |
protein-coding |
Organism |
Bos taurus(cattle) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
NM_001113174.1 |
NP_001106645.1 |
stromal cell-derived factor 1 precursor |
XM_005226616.2 |
XP_005226673.1 |
stromal cell-derived factor 1 isoform X2 |
XM_005226615.3 |
XP_005226672.1 |
stromal cell-derived factor 1 isoform X1 |
XM_005226615.4 |
XP_005226672.1 |
stromal cell-derived factor 1 isoform X1 |
XM_005226618.3 |
XP_005226675.1 |
stromal cell-derived factor 1 isoform X4 |
XM_005226618.4 |
XP_005226675.1 |
stromal cell-derived factor 1 isoform X4 |
XM_005226616.1 |
XP_005226673.1 |
stromal cell-derived factor 1 isoform X2 |
XM_005226617.1 |
XP_005226674.1 |
stromal cell-derived factor 1 isoform X3 |
XM_005226617.2 |
XP_005226674.1 |
stromal cell-derived factor 1 isoform X3 |
Homo sapiens (human) |
CXCL12 |
NP_001171605.1 |
Rattus norvegicus (Norway rat) |
Cxcl12 |
NP_001029055.1 |
Mus musculus (house mouse) |
Cxcl12 |
NP_001012495.1 |
Gallus gallus (chicken) |
CXCL12 |
NP_989841.1 |
Bos taurus (cattle) |
CXCL12 |
NP_001106645.1 |
Pan troglodytes (chimpanzee) |
LOC741624 |
XP_001157443.2 |
|
CXCL12 |
NP_001028106.1 |
Canis lupus familiaris (dog) |
CXCL12 |
NP_001121569.1 |
Xenopus tropicalis (tropical clawed frog) |
cxcl12 |
NP_001015764.1 |
Related articles in PubMed
SDF-1 in Mammary Fibroblasts of Bovine with Mastitis Induces EMT and Inflammatory Response of Epithelial Cells.
He G, Ma M, Yang W, Wang H, Zhang Y, Gao MQ
International journal of biological sciences13(5)604-614(2017)
Expression and regulation of stromal cell-derived factor-1 (SDF1) and chemokine CXC motif receptor 4 (CXCR4) in equine and bovine preovulatory follicles.
Sayasith K, Sirois J
Molecular and cellular endocrinology391(1-2)10-21(2014 Jun)
[Polymorphism of intron 2 of the SDF1 gene in Galloway, Hereford, and Russian Black Pied cattle].
Iudin NS, Nefedova MV, Kobzev VF, Romashenko AG, Voevoda MI
Genetika47(2)279-83(2011 Feb)
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Mar?ais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL
Genome biology10(4)R42(2009)
An ordered comparative map of the cattle and human genomes.
Band MR, Larson JH, Rebeiz M, Green CA, Heyen DW, Donovan J, Windish R, Steining C, Mahyuddin P, Womack JE, Lewin HA
Genome research10(9)1359-68(2000 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following CXCL12 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CXCL12 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
OBa40774 |
Clone ID Related Accession (Same CDS sequence) |
NM_001113174.1
|
Accession Version |
NM_001113174.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 270bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2018-05-13 |
Organism |
Bos taurus(cattle) |
Product |
stromal cell-derived factor 1 precursor |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC119979.1. On or before Dec 25, 2007 this sequence version replaced XM_001250631.1, XM_864886.2, XM_874568.2.
##Evidence-Data-START##
Transcript exon combination :: BC119979.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMN03145415, SAMN03145426 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAGTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001106645.1 |
CDS | 37..306 |
Translation | |
Target ORF information:
RefSeq Version | NM_001113174.1 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus C-X-C motif chemokine ligand 12 (CXCL12), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001113174.1 |
ORF Insert Sequence:
1 61 121 181 241
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAGTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OBa34376 |
Clone ID Related Accession (Same CDS sequence) |
XM_005226615.3
, XM_005226615.4
|
Accession Version |
XM_005226615.3 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 360bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-01-25 |
Organism |
Bos taurus(cattle) |
Product |
stromal cell-derived factor 1 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003104627.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jan 26, 2016 this sequence version replaced XM_005226615.2.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Bos taurus Annotation Release 105
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 6.5
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAGGGG AGCAGAGAAG AAAAAGTGGG GAAAAAAGAA AAGATAGGAA AAAAGAAGCG ACAGAAGAAG AGAAAGGCTG CTCAGAAAAG GAAAATCTAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005226672.1 |
CDS | 101..460 |
Translation | |
Target ORF information:
RefSeq Version | XM_005226615.3 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus chemokine (C-X-C motif) ligand 12 (CXCL12), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005226615.3 |
ORF Insert Sequence:
1 61 121 181 241 301
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAGGGG AGCAGAGAAG AAAAAGTGGG GAAAAAAGAA AAGATAGGAA AAAAGAAGCG ACAGAAGAAG AGAAAGGCTG CTCAGAAAAG GAAAATCTAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OBa34376 |
Clone ID Related Accession (Same CDS sequence) |
XM_005226615.3
, XM_005226615.4
|
Accession Version |
XM_005226615.4 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 360bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2018-05-06 |
Organism |
Bos taurus(cattle) |
Product |
stromal cell-derived factor 1 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037355.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On May 7, 2018 this sequence version replaced XM_005226615.3.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Bos taurus Annotation Release 106
Annotation Version :: 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 8.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAGGGG AGCAGAGAAG AAAAAGTGGG GAAAAAAGAA AAGATAGGAA AAAAGAAGCG ACAGAAGAAG AGAAAGGCTG CTCAGAAAAG GAAAATCTAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005226672.1 |
CDS | 101..460 |
Translation | |
Target ORF information:
RefSeq Version | XM_005226615.4 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus C-X-C motif chemokine ligand 12 (CXCL12), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005226615.4 |
ORF Insert Sequence:
1 61 121 181 241 301
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAGGGG AGCAGAGAAG AAAAAGTGGG GAAAAAAGAA AAGATAGGAA AAAAGAAGCG ACAGAAGAAG AGAAAGGCTG CTCAGAAAAG GAAAATCTAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OBa34377 |
Clone ID Related Accession (Same CDS sequence) |
XM_005226616.1
|
Accession Version |
XM_005226616.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 354bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-01-25 |
Organism |
Bos taurus(cattle) |
Product |
stromal cell-derived factor 1 isoform X2 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003104627.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Bos taurus Annotation Release 105
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 6.5
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAACCC AGCCCTACTC TCTCGGGCCT GACCTCTGCC CTGGGAACTG ACCCGGCCAG GACTACTGTC GGCGTCACCA GCAGCGGGAG CTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005226673.1 |
CDS | 101..454 |
Translation | |
Target ORF information:
RefSeq Version | XM_005226616.1 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus chemokine (C-X-C motif) ligand 12 (CXCL12), transcript variant X2, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005226616.1 |
ORF Insert Sequence:
1 61 121 181 241 301
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAACCC AGCCCTACTC TCTCGGGCCT GACCTCTGCC CTGGGAACTG ACCCGGCCAG GACTACTGTC GGCGTCACCA GCAGCGGGAG CTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OBa34378 |
Clone ID Related Accession (Same CDS sequence) |
XM_005226617.1
, XM_005226617.2
|
Accession Version |
XM_005226617.1 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 282bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-01-25 |
Organism |
Bos taurus(cattle) |
Product |
stromal cell-derived factor 1 isoform X3 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003104627.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Bos taurus Annotation Release 105
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 6.5
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAGAGG TTCAAGATGT GA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005226674.1 |
CDS | 101..382 |
Translation | |
Target ORF information:
RefSeq Version | XM_005226617.1 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus chemokine (C-X-C motif) ligand 12 (CXCL12), transcript variant X3, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005226617.1 |
ORF Insert Sequence:
1 61 121 181 241
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAGAGG TTCAAGATGT GA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OBa34378 |
Clone ID Related Accession (Same CDS sequence) |
XM_005226617.1
, XM_005226617.2
|
Accession Version |
XM_005226617.2 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 282bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2018-05-06 |
Organism |
Bos taurus(cattle) |
Product |
stromal cell-derived factor 1 isoform X3 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037355.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On May 7, 2018 this sequence version replaced XM_005226617.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Bos taurus Annotation Release 106
Annotation Version :: 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 8.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAGAGG TTCAAGATGT GA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005226674.1 |
CDS | 159..440 |
Translation | |
Target ORF information:
RefSeq Version | XM_005226617.2 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus C-X-C motif chemokine ligand 12 (CXCL12), transcript variant X3, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005226617.2 |
ORF Insert Sequence:
1 61 121 181 241
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAGAGG TTCAAGATGT GA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OBa34379 |
Clone ID Related Accession (Same CDS sequence) |
XM_005226618.3
, XM_005226618.4
|
Accession Version |
XM_005226618.3 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 273bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-01-25 |
Organism |
Bos taurus(cattle) |
Product |
stromal cell-derived factor 1 isoform X4 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003104627.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jan 26, 2016 this sequence version replaced XM_005226618.2.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Bos taurus Annotation Release 105
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 6.5
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAACGC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005226675.1 |
CDS | 101..373 |
Translation | |
Target ORF information:
RefSeq Version | XM_005226618.3 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus chemokine (C-X-C motif) ligand 12 (CXCL12), transcript variant X4, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005226618.3 |
ORF Insert Sequence:
1 61 121 181 241
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAACGC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OBa34379 |
Clone ID Related Accession (Same CDS sequence) |
XM_005226618.3
, XM_005226618.4
|
Accession Version |
XM_005226618.4 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 273bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2018-05-06 |
Organism |
Bos taurus(cattle) |
Product |
stromal cell-derived factor 1 isoform X4 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037355.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On May 7, 2018 this sequence version replaced XM_005226618.3.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Bos taurus Annotation Release 106
Annotation Version :: 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 8.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAACGC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005226675.1 |
CDS | 101..373 |
Translation | |
Target ORF information:
RefSeq Version | XM_005226618.4 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus C-X-C motif chemokine ligand 12 (CXCL12), transcript variant X4, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005226618.4 |
ORF Insert Sequence:
1 61 121 181 241
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAACGC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OBa231669 |
Clone ID Related Accession (Same CDS sequence) |
XM_005226616.2
|
Accession Version |
XM_005226616.2 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 354bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2018-05-06 |
Organism |
Bos taurus(cattle) |
Product |
stromal cell-derived factor 1 isoform X2 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037355.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On May 7, 2018 this sequence version replaced XM_005226616.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Bos taurus Annotation Release 106
Annotation Version :: 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 8.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAACCC AGCCCTACTC TCTCGGGCCT GACCTCTGCC CTGGGAACCG ACCCGGCCAG GACTACTGTC GGCGTCACCA GCAGCGGGAG CTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005226673.1 |
CDS | 101..454 |
Translation | |
Target ORF information:
RefSeq Version | XM_005226616.2 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus C-X-C motif chemokine ligand 12 (CXCL12), transcript variant X2, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005226616.2 |
ORF Insert Sequence:
1 61 121 181 241 301
| ATGGATGCCA AGGTCTTCGT CGTGCTGGCC CTCGTGCTGA CTGCGCTGTG CCTCAGCGAC GCGAAACCGG TCAGCCTGAG CTACAGATGC CCTTGCCGAT TCTTTGAGAG CCATGTCGCC AAAGCCAACG TCAAGCACCT CAAAATCCTC AACACTCCAA ACTGCTCCCT TCAGATCGTG GCAAGGCTGA AGAACAACAA TAGGCAAGTG TGCATTGACC CGAAATTGAA GTGGATTCAG GAATACCTGG ACAAAGCTTT AAACAAACCC AGCCCTACTC TCTCGGGCCT GACCTCTGCC CTGGGAACCG ACCCGGCCAG GACTACTGTC GGCGTCACCA GCAGCGGGAG CTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
 |
A whole-genome assembly of the domestic cow, Bos taurus.
Genome biology10(4)R42(2009)
Zimin AV,Delcher AL,Florea L,Kelley DR,Schatz MC,Puiu D,Hanrahan F,Pertea G,Van Tassell CP,Sonstegard TS,Mar?ais G,Roberts M,Subramanian P,Yorke JA,Salzberg SL |
 |
An ordered comparative map of the cattle and human genomes.
Genome research10(9)1359-68(2000 Sep)
Band MR,Larson JH,Rebeiz M,Green CA,Heyen DW,Donovan J,Windish R,Steining C,Mahyuddin P,Womack JE,Lewin HA |