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ptafr cDNA ORF clone, Danio rerio(zebrafish)

Summary

Gene Symbol ptafr
Entrez Gene ID 100002627
Full Name platelet-activating factor receptor
Synonyms si:dkey-265g24.3
General protein information
Preferred Names

platelet-activating factor receptor

Names

platelet-activating factor receptor
Gene Type protein-coding
Organism Danio rerio(zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_001342336.4 XP_001342372.1 platelet-activating factor receptor
XM_001342336.5 XP_001342372.1 platelet-activating factor receptor

Pathways from BioSystems


Homologies


PTAFR XP_001112942.2
Canis lupus familiaris (dog) PTAFR XP_005617766.1
Rattus norvegicus (Norway rat) Ptafr NP_445773.1
Xenopus tropicalis (tropical clawed frog) ptafr NP_001008003.1
Homo sapiens (human) PTAFR NP_000943.1
Pan troglodytes (chimpanzee) PTAFR XP_001151906.1
Bos taurus (cattle) PTAFR NP_001035628.1
Mus musculus (house mouse) Ptafr NP_001074680.1
Danio rerio (zebrafish) LOC100002627 XP_001342372.1
Gallus gallus (chicken) PTAFR XP_004947758.1

Gene Ontology

The following ptafr gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ptafr cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa22635 XM_001342336.5
Latest version!		 Danio rerio platelet-activating factor receptor (ptafr), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $258.30
$369.00
View Old Accession Versions >>
ODa22635 XM_001342336.4 Danio rerio platelet-activating factor receptor (ptafr), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $258.30
$369.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa22635
Clone ID Related Accession (Same CDS sequence) XM_001342336.4 , XM_001342336.5
Accession Version XM_001342336.4 Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1098bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-06-23
Organism Danio rerio(Zebrafish)
Product platelet-activating factor receptor
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007128.6) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_001342336.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
ATGGAAAACA TGTCGTCTAC TAAATGGACC GAAAATACCA ACGACACTGA AATCATCGAT 
TCAAGGTTCC GTTACACTCT CTTTCCCATT TTCTATGGTG TGGTCTTCGT CTTGGGGTTG 
ATAGCCAACT GCTATGCTCT CTATGTGCTT CACCGCATGC GGGAGTCTAA AGCCATGAAT 
GAGATTCGGA TCTACATGAC CAACTTGACT GTCGCAGACC TGTTGTTTGT GTCTGCTCTA 
CCGTTCTGGA TTGACTACTA CATGCATGAA GGTCACTGGA GATCCACAGA AGCCTTCTGT 
CGTATCACAG GCACATTTTT CTTTATTAAC ACCTATGGCT CTATTCTATT CCTCACTGTC 
ATCAGCATTA ACCGTTACTG GGCTGTTACC AAACCCCTAA AGGCAGCCTC TTCTGACTGC 
TGGAAACGTG GAGCGATCAT CTCAGTGCTC ATCTGGGCTT TCATCCTTTC AGCATCGATT 
CCTCAACTTA CTAAAGAGGG AATTCAGAAG GAACAAAGAA TGAACAGGTC CATGCAACGC 
TGTTTTGAGG GTTACCACTA CACAGATGAA AATACAAAAA ACGTATTGGT CATCACTCAC 
TTCAGCATTA TTGGCTTGTT CTTCCTTGTT TTCTTAATGG TGATTATCTG CAACATCTCC 
ATCGCTCGAG CTCTTCTGTC TCAACCCATC AGTCAGCCTC GAGCCAGCAC AGGACGACGT 
CCTGGCGGGA CCAAACGAAG AGCTTTGAGG ATGTTGTGTG CCGTCATTGG CGTGTTTGTA 
ATCTGTTTCC TACCCCATCA TGTGGTGCAA GGTCCCTGGG TTTTGTCAGT GCTGCAACTG 
AAGAAGTATT GGTCCACATG GACTCACCAA ACCTTAAACG ATGCCCATCA GATCACCCTC 
ATGCTTATGG GGATCAACTG TCTCCTAGAC CCATTGGTGT ATTGCTTCGC TACCACAAAA 
TTTCGCAAGT ACCTCGAAAA TCATTTCACA AAGATGAAGA ATAGGAAAAA CTGCTCACGT 
TACACGTTAA GCACAGGTAT ATCACTGAAG AGTAGACATC AGAGCATTGT CAATGCTGTA 
GATGAAGAGA AAGCATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_001342372.1
CDS178..1275
Translation

Target ORF information:

RefSeq Version XM_001342336.4
Organism Danio rerio(Zebrafish)
Definition Danio rerio platelet-activating factor receptor (ptafr), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_001342336.4

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
ATGGAAAACA TGTCGTCTAC TAAATGGACC GAAAATACCA ACGACACTGA AATCATCGAT 
TCAAGGTTCC GTTACACTCT CTTTCCCATT TTCTATGGTG TGGTCTTCGT CTTGGGGTTG 
ATAGCCAACT GCTATGCTCT CTATGTGCTT CACCGCATGC GGGAGTCTAA AGCCATGAAT 
GAGATTCGGA TCTACATGAC CAACTTGACT GTCGCAGACC TGTTGTTTGT GTCTGCTCTA 
CCGTTCTGGA TTGACTACTA CATGCATGAA GGTCACTGGA GATCCACAGA AGCCTTCTGT 
CGTATCACAG GCACATTTTT CTTTATTAAC ACCTATGGCT CTATTCTATT CCTCACTGTC 
ATCAGCATTA ACCGTTACTG GGCTGTTACC AAACCCCTAA AGGCAGCCTC TTCTGACTGC 
TGGAAACGTG GAGCGATCAT CTCAGTGCTC ATCTGGGCTT TCATCCTTTC AGCATCGATT 
CCTCAACTTA CTAAAGAGGG AATTCAGAAG GAACAAAGAA TGAACAGGTC CATGCAACGC 
TGTTTTGAGG GTTACCACTA CACAGATGAA AATACAAAAA ACGTATTGGT CATCACTCAC 
TTCAGCATTA TTGGCTTGTT CTTCCTTGTT TTCTTAATGG TGATTATCTG CAACATCTCC 
ATCGCTCGAG CTCTTCTGTC TCAACCCATC AGTCAGCCTC GAGCCAGCAC AGGACGACGT 
CCTGGCGGGA CCAAACGAAG AGCTTTGAGG ATGTTGTGTG CCGTCATTGG CGTGTTTGTA 
ATCTGTTTCC TACCCCATCA TGTGGTGCAA GGTCCCTGGG TTTTGTCAGT GCTGCAACTG 
AAGAAGTATT GGTCCACATG GACTCACCAA ACCTTAAACG ATGCCCATCA GATCACCCTC 
ATGCTTATGG GGATCAACTG TCTCCTAGAC CCATTGGTGT ATTGCTTCGC TACCACAAAA 
TTTCGCAAGT ACCTCGAAAA TCATTTCACA AAGATGAAGA ATAGGAAAAA CTGCTCACGT 
TACACGTTAA GCACAGGTAT ATCACTGAAG AGTAGACATC AGAGCATTGT CAATGCTGTA 
GATGAAGAGA AAGCATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa22635
Clone ID Related Accession (Same CDS sequence) XM_001342336.4 , XM_001342336.5
Accession Version XM_001342336.5 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1098bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2017-06-14
Organism Danio rerio(zebrafish)
Product platelet-activating factor receptor
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007128.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_001342336.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
ATGGAAAACA TGTCGTCTAC TAAATGGACC GAAAATACCA ACGACACTGA AATCATCGAT 
TCAAGGTTCC GTTACACTCT CTTTCCCATT TTCTATGGTG TGGTCTTCGT CTTGGGGTTG 
ATAGCCAACT GCTATGCTCT CTATGTGCTT CACCGCATGC GGGAGTCTAA AGCCATGAAT 
GAGATTCGGA TCTACATGAC CAACTTGACT GTCGCAGACC TGTTGTTTGT GTCTGCTCTA 
CCGTTCTGGA TTGACTACTA CATGCATGAA GGTCACTGGA GATCCACAGA AGCCTTCTGT 
CGTATCACAG GCACATTTTT CTTTATTAAC ACCTATGGCT CTATTCTATT CCTCACTGTC 
ATCAGCATTA ACCGTTACTG GGCTGTTACC AAACCCCTAA AGGCAGCCTC TTCTGACTGC 
TGGAAACGTG GAGCGATCAT CTCAGTGCTC ATCTGGGCTT TCATCCTTTC AGCATCGATT 
CCTCAACTTA CTAAAGAGGG AATTCAGAAG GAACAAAGAA TGAACAGGTC CATGCAACGC 
TGTTTTGAGG GTTACCACTA CACAGATGAA AATACAAAAA ACGTATTGGT CATCACTCAC 
TTCAGCATTA TTGGCTTGTT CTTCCTTGTT TTCTTAATGG TGATTATCTG CAACATCTCC 
ATCGCTCGAG CTCTTCTGTC TCAACCCATC AGTCAGCCTC GAGCCAGCAC AGGACGACGT 
CCTGGCGGGA CCAAACGAAG AGCTTTGAGG ATGTTGTGTG CCGTCATTGG CGTGTTTGTA 
ATCTGTTTCC TACCCCATCA TGTGGTGCAA GGTCCCTGGG TTTTGTCAGT GCTGCAACTG 
AAGAAGTATT GGTCCACATG GACTCACCAA ACCTTAAACG ATGCCCATCA GATCACCCTC 
ATGCTTATGG GGATCAACTG TCTCCTAGAC CCATTGGTGT ATTGCTTCGC TACCACAAAA 
TTTCGCAAGT ACCTCGAAAA TCATTTCACA AAGATGAAGA ATAGGAAAAA CTGCTCACGT 
TACACGTTAA GCACAGGTAT ATCACTGAAG AGTAGACATC AGAGCATTGT CAATGCTGTA 
GATGAAGAGA AAGCATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_001342372.1
CDS121..1218
Translation

Target ORF information:

RefSeq Version XM_001342336.5
Organism Danio rerio(zebrafish)
Definition Danio rerio platelet-activating factor receptor (ptafr), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_001342336.5

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
ATGGAAAACA TGTCGTCTAC TAAATGGACC GAAAATACCA ACGACACTGA AATCATCGAT 
TCAAGGTTCC GTTACACTCT CTTTCCCATT TTCTATGGTG TGGTCTTCGT CTTGGGGTTG 
ATAGCCAACT GCTATGCTCT CTATGTGCTT CACCGCATGC GGGAGTCTAA AGCCATGAAT 
GAGATTCGGA TCTACATGAC CAACTTGACT GTCGCAGACC TGTTGTTTGT GTCTGCTCTA 
CCGTTCTGGA TTGACTACTA CATGCATGAA GGTCACTGGA GATCCACAGA AGCCTTCTGT 
CGTATCACAG GCACATTTTT CTTTATTAAC ACCTATGGCT CTATTCTATT CCTCACTGTC 
ATCAGCATTA ACCGTTACTG GGCTGTTACC AAACCCCTAA AGGCAGCCTC TTCTGACTGC 
TGGAAACGTG GAGCGATCAT CTCAGTGCTC ATCTGGGCTT TCATCCTTTC AGCATCGATT 
CCTCAACTTA CTAAAGAGGG AATTCAGAAG GAACAAAGAA TGAACAGGTC CATGCAACGC 
TGTTTTGAGG GTTACCACTA CACAGATGAA AATACAAAAA ACGTATTGGT CATCACTCAC 
TTCAGCATTA TTGGCTTGTT CTTCCTTGTT TTCTTAATGG TGATTATCTG CAACATCTCC 
ATCGCTCGAG CTCTTCTGTC TCAACCCATC AGTCAGCCTC GAGCCAGCAC AGGACGACGT 
CCTGGCGGGA CCAAACGAAG AGCTTTGAGG ATGTTGTGTG CCGTCATTGG CGTGTTTGTA 
ATCTGTTTCC TACCCCATCA TGTGGTGCAA GGTCCCTGGG TTTTGTCAGT GCTGCAACTG 
AAGAAGTATT GGTCCACATG GACTCACCAA ACCTTAAACG ATGCCCATCA GATCACCCTC 
ATGCTTATGG GGATCAACTG TCTCCTAGAC CCATTGGTGT ATTGCTTCGC TACCACAAAA 
TTTCGCAAGT ACCTCGAAAA TCATTTCACA AAGATGAAGA ATAGGAAAAA CTGCTCACGT 
TACACGTTAA GCACAGGTAT ATCACTGAAG AGTAGACATC AGAGCATTGT CAATGCTGTA 
GATGAAGAGA AAGCATAG

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed