Gene Symbol | si:ch211-287b5.1 |
Entrez Gene ID | 100034394 |
Full Name | si:ch211-287b5.1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » si:ch211-287b5.1 cDNA ORF clone
Gene Symbol | si:ch211-287b5.1 |
Entrez Gene ID | 100034394 |
Full Name | si:ch211-287b5.1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
NM_001365105.1 | NP_001352034.1 | coiled-coil domain-containing protein 132 isoform 2 |
XM_021473351.1 | XP_021329026.1 | syndetin isoform X4 |
XM_017352306.2 | XP_017207795.1 | syndetin isoform X1 |
NM_001365104.1 | NP_001352033.1 | coiled-coil domain-containing protein 132 isoform 1 |
XM_017352306.1 | XP_017207795.1 | syndetin isoform X1 |
XM_017352307.1 | XP_017207796.1 | syndetin isoform X2 |
XM_017352308.1 | XP_017207797.1 | syndetin isoform X3 |
XM_021473352.1 | XP_021329027.1 | syndetin isoform X5 |
XM_017352307.2 | XP_017207796.1 | syndetin isoform X2 |
XM_017352308.2 | XP_017207797.1 | syndetin isoform X3 |
Homo sapiens (human) | CCDC132 | NP_060137.2 |
Pan troglodytes (chimpanzee) | CCDC132 | XP_519203.3 |
Bos taurus (cattle) | CCDC132 | NP_001098883.1 |
Canis lupus familiaris (dog) | CCDC132 | XP_532460.4 |
Mus musculus (house mouse) | Ccdc132 | NP_077222.4 |
Gallus gallus (chicken) | CCDC132 | NP_001012872.1 |
Arabidopsis thaliana (thale cress) | AT2G27900 | NP_001031433.1 |
Rattus norvegicus (Norway rat) | Ccdc132 | NP_001166982.1 |
Caenorhabditis elegans (roundworm) | C44B9.1 | NP_499394.2 |
Oryza sativa (rice) | Os10g0546300 | NP_001065215.1 |
CCDC132 | XP_001090270.2 | |
Danio rerio (zebrafish) | si:ch211-287b5.1 | XP_001923725.4 |
Drosophila melanogaster (fruit fly) | CG4996 | NP_611258.2 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP000343 | XP_310775.5 |
Xenopus tropicalis (tropical clawed frog) | ccdc132 | NP_001107716.1 |
Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)
Zebrafish Collagen Type I: Molecular and Biochemical Characterization of the Major Structural Protein in Bone and Skin.
Gistelinck C, Gioia R, Gagliardi A, Tonelli F, Marchese L, Bianchi L, Landi C, Bini L, Huysseune A, Witten PE, Staes A, Gevaert K, De Rocker N, Menten B, Malfait F, Leikin S, Carra S, Tenni R, Rossi A, De Paepe A, Coucke P, Willaert A, Forlino A
Scientific reports621540(2016 Feb)
Calcitonin receptor family evolution and fishing for function using in silico promoter analysis.
Martins R, Vieira FA, Power DM
General and comparative endocrinology20961-73(2014 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following si:ch211-287b5.1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the si:ch211-287b5.1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa24391 | |
Clone ID Related Accession (Same CDS sequence) | XM_021473352.1 | |
Accession Version | XM_021473352.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 858bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | syndetin isoform X5 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018395059.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACTGTTG TTGTCCTGCA GGAGTCTGGA GGTGAGAACC CAGGTCCTCA TGCATCTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021329027.1 |
CDS | 16..873 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021473352.1 |
1 | ATGACTGTTG TTGTCCTGCA GGAGTCTGGA GGTGAGAACC CAGGTCCTCA TGCATCTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa56114 | |
Clone ID Related Accession (Same CDS sequence) | XM_017352306.2 , NM_001365104.1 , XM_017352306.1 | |
Accession Version | NM_001365104.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2973bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-07-20 | |
Organism | Danio rerio(zebrafish) | |
Product | coiled-coil domain-containing protein 132 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX936336.10, CABZ01060509.1, CABZ01060512.1, CABZ01060513.1, CABZ01060514.1 and CT027724.7. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA4476738 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001352033.1 |
CDS | 109..3081 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001365104.1 |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa56116 | |
Clone ID Related Accession (Same CDS sequence) | NM_001365105.1 , XM_017352308.1 , XM_017352308.2 | |
Accession Version | NM_001365105.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2898bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-07-20 | |
Organism | Danio rerio(zebrafish) | |
Product | coiled-coil domain-containing protein 132 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX936336.10, CABZ01060509.1, CABZ01060512.1, CABZ01060513.1, CABZ01060514.1 and CT027724.7. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: GDQH01006929.1, GFIL01003214.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001352034.1 |
CDS | 109..3006 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001365105.1 |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa56114 | |
Clone ID Related Accession (Same CDS sequence) | XM_017352306.2 , NM_001365104.1 , XM_017352306.1 | |
Accession Version | XM_017352306.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2973bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | syndetin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017352306.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017207795.1 |
CDS | 109..3081 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017352306.2 |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa56114 | |
Clone ID Related Accession (Same CDS sequence) | XM_017352306.2 , NM_001365104.1 , XM_017352306.1 | |
Accession Version | XM_017352306.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2973bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | syndetin isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017207795.1 |
CDS | 107..3079 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017352306.1 |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa56115 | |
Clone ID Related Accession (Same CDS sequence) | XM_017352307.1 , XM_017352307.2 | |
Accession Version | XM_017352307.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2970bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | syndetin isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017207796.1 |
CDS | 107..3076 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017352307.1 |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa56115 | |
Clone ID Related Accession (Same CDS sequence) | XM_017352307.1 , XM_017352307.2 | |
Accession Version | XM_017352307.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2970bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | syndetin isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017352307.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017207796.1 |
CDS | 109..3078 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017352307.2 |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa56116 | |
Clone ID Related Accession (Same CDS sequence) | NM_001365105.1 , XM_017352308.1 , XM_017352308.2 | |
Accession Version | XM_017352308.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2898bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | syndetin isoform X3 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017207797.1 |
CDS | 107..3004 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017352308.1 |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa56116 | |
Clone ID Related Accession (Same CDS sequence) | NM_001365105.1 , XM_017352308.1 , XM_017352308.2 | |
Accession Version | XM_017352308.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2898bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | syndetin isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017352308.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017207797.1 |
CDS | 109..3006 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017352308.2 |
1 | ATGCAGAAAA TCAAGTCTCT GATGGCCCGT CAGGGTCTGA AAAGTCCTCA GGAAAGTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Evolution of complexity in the zebrafish synapse proteome. |
Zebrafish Collagen Type I: Molecular and Biochemical Characterization of the Major Structural Protein in Bone and Skin. |
Calcitonin receptor family evolution and fishing for function using in silico promoter analysis. |