Gene Symbol | chico |
Entrez Gene ID | 30067 |
Full Name | chico |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » chico cDNA ORF clone
gRNAs
Gene Symbol | chico |
Entrez Gene ID | 30067 |
Full Name | chico |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_009298917.2 | XP_009297192.1 | chico isoform X1 |
XM_009298917.3 | XP_009297192.1 | chico isoform X1 |
NM_130911.2 | NP_570986.1 | chico |
NM_001312685.1 | NP_001299614.1 | chico |
Homo sapiens (human) | AES | NP_945320.1 |
Bos taurus (cattle) | AES | NP_001121969.1 |
Mus musculus (house mouse) | Aes | NP_034477.1 |
Rattus norvegicus (Norway rat) | Aes | NP_062093.1 |
Gallus gallus (chicken) | AES | XP_003642896.2 |
LOC712353 | XP_001099930.2 | |
Pan troglodytes (chimpanzee) | AES | XP_001153657.1 |
Xenopus tropicalis (tropical clawed frog) | aes | NP_001039102.1 |
Danio rerio (zebrafish) | aes | NP_956717.1 |
Danio rerio (zebrafish) | chico | NP_570986.1 |
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, Livstone MS, Lewis SE, Thomas PD
Briefings in bioinformatics12(5)449-62(2011 Sep)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA,
Proceedings of the National Academy of Sciences of the United States of America99(26)16899-903(2002 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following chico gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the chico cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa07565 | |
Clone ID Related Accession (Same CDS sequence) | NM_130911.2 , NM_001312685.1 | |
Accession Version | NM_130911.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 600bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-11-23 | |
Organism | Danio rerio(zebrafish) | |
Product | chico | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CABZ01042148.1, CU571311.2 and CU570695.21. On Aug 18, 2015 this sequence version replaced NM_130911.1. Transcript Variant: This variant (1) represents the longer transcript. Variant 1 and 2 encode the same protein. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AF085218.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGATGTTTC CACAAGCCAG GCACTCGGCT TCGTCTCAAT CGACACAGCC GCTGAAATTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_570986.1 |
CDS | 546..1145 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGATGTTTC CACAAGCCAG GCACTCGGCT TCGTCTCAAT CGACACAGCC GCTGAAATTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa07565 | |
Clone ID Related Accession (Same CDS sequence) | NM_130911.2 , NM_001312685.1 | |
Accession Version | NM_001312685.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 600bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-11-23 | |
Organism | Danio rerio(zebrafish) | |
Product | chico | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CABZ01042148.1, CU571311.2 and CU570695.21. On Aug 18, 2015 this sequence version replaced XM_005171447.2. Transcript Variant: This variant (2) uses alternate splice sites in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein. ##Evidence-Data-START## Transcript exon combination :: BC097097.1, CV121324.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGATGTTTC CACAAGCCAG GCACTCGGCT TCGTCTCAAT CGACACAGCC GCTGAAATTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001299614.1 |
CDS | 297..896 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATGTTTC CACAAGCCAG GCACTCGGCT TCGTCTCAAT CGACACAGCC GCTGAAATTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa07566 | |
Clone ID Related Accession (Same CDS sequence) | XM_009298917.2 , XM_009298917.3 | |
Accession Version | XM_009298917.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 597bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | chico isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007113.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009298917.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATGTTTC CACAAGCCAG GCACTCGGCT TCGTCTCAAT CGACACAGCC GCTGAAATTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009297192.1 |
CDS | 809..1405 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATGTTTC CACAAGCCAG GCACTCGGCT TCGTCTCAAT CGACACAGCC GCTGAAATTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa07566 | |
Clone ID Related Accession (Same CDS sequence) | XM_009298917.2 , XM_009298917.3 | |
Accession Version | XM_009298917.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 597bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | chico isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007113.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_009298917.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATGTTTC CACAAGCCAG GCACTCGGCT TCGTCTCAAT CGACACAGCC GCTGAAATTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009297192.1 |
CDS | 586..1182 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATGTTTC CACAAGCCAG GCACTCGGCT TCGTCTCAAT CGACACAGCC GCTGAAATTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RFX transcription factors are essential for hearing in mice. |
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. |
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |