Gene Symbol | ddx5 |
Entrez Gene ID | 322206 |
Full Name | DEAD (Asp-Glu-Ala-Asp) box helicase 5 |
Synonyms | wu:fa56a07,wu:fb11e01,wu:fb16c10,wu:fb53b05 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » ddx5 cDNA ORF clone
Gene Symbol | ddx5 |
Entrez Gene ID | 322206 |
Full Name | DEAD (Asp-Glu-Ala-Asp) box helicase 5 |
Synonyms | wu:fa56a07,wu:fb11e01,wu:fb16c10,wu:fb53b05 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
NM_212612.2 | NP_997777.2 | probable ATP-dependent RNA helicase DDX5 isoform 1 |
NM_001309525.1 | NP_001296454.1 | probable ATP-dependent RNA helicase DDX5 isoform 2 |
Canis lupus familiaris (dog) | DDX5 | XP_005624321.1 |
Gallus gallus (chicken) | DDX5 | NP_990158.1 |
Kluyveromyces lactis | KLLA0F23716g | XP_456137.1 |
Schizosaccharomyces pombe (fission yeast) | dbp2 | NP_596523.1 |
Rattus norvegicus (Norway rat) | Ddx5 | NP_001007614.1 |
Saccharomyces cerevisiae (baker's yeast) | DBP2 | NP_014287.3 |
Eremothecium gossypii | AGOS_AFL221C | NP_985329.2 |
Arabidopsis thaliana (thale cress) | AT5G63120 | NP_974985.1 |
Homo sapiens (human) | DDX5 | NP_004387.1 |
Bos taurus (cattle) | DDX5 | NP_001178324.1 |
Mus musculus (house mouse) | Ddx5 | NP_031866.2 |
Drosophila melanogaster (fruit fly) | CG10077 | NP_648062.2 |
Neurospora crassa | NCU07839 | XP_962960.2 |
Arabidopsis thaliana (thale cress) | AT1G55150 | NP_175911.1 |
Pan troglodytes (chimpanzee) | DDX5 | NP_001138306.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_16901 | XP_003712846.1 |
Xenopus tropicalis (tropical clawed frog) | ddx5 | NP_989229.1 |
DDX5 | XP_001109860.1 | |
Danio rerio (zebrafish) | ddx5 | NP_997777.1 |
Black carp vasa identifies embryonic and gonadal germ cells.
Xue T, Yu M, Pan Q, Wang Y, Fang J, Li L, Deng Y, Chen K, Wang Q, Chen T
Development genes and evolution227(4)231-243(2017 Jul)
Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)
Identification and sexually dimorphic expression of vasa isoforms in Dabry's sturgeon (Acipenser dabryanus), and functional analysis of vasa 3'-untranslated region.
Ye H, Yue HM, Yang XG, Li CJ, Wei QW
Cell and tissue research366(1)203-18(2016 10)
Fatty liver disease induced by perfluorooctane sulfonate: Novel insight from transcriptome analysis.
Fai Tse WK, Li JW, Kwan Tse AC, Chan TF, Hin Ho JC, Sun Wu RS, Chu Wong CK, Lai KP
Chemosphere159166-177(2016 Sep)
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following ddx5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ddx5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa08211 | |
Clone ID Related Accession (Same CDS sequence) | NM_212612.2 | |
Accession Version | NM_212612.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1854bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-01-26 | |
Organism | Danio rerio(zebrafish) | |
Product | probable ATP-dependent RNA helicase DDX5 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX085195.5. On or before Jun 10, 2015 this sequence version replaced XM_005171567.1, NM_212612.1. Transcript Variant: This variant (1) encodes the longer isoform (1). Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AY391418.1, GFIL01008484.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCCTGGAT ATTCTGACAG AGACCGCGGT CGTGACAGAG GTAGTTACAG CAGTGGACCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_997777.2 |
CDS | 136..1989 |
Translation |
Target ORF information:
Target ORF information:
|
NM_212612.2 |
1 | ATGCCTGGAT ATTCTGACAG AGACCGCGGT CGTGACAGAG GTAGTTACAG CAGTGGACCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa08213 | |
Clone ID Related Accession (Same CDS sequence) | NM_001309525.1 | |
Accession Version | NM_001309525.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1491bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-01-26 | |
Organism | Danio rerio(zebrafish) | |
Product | probable ATP-dependent RNA helicase DDX5 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX085195.5. On Jun 10, 2015 this sequence version replaced XM_005171569.1. Transcript Variant: This variant (2) uses an alternate splice junction in the 3' coding sequence compared to variant 1, that causes a frameshift. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC067585.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCCTGGAT ATTCTGACAG AGACCGCGGT CGTGACAGAG GTAGTTACAG CAGTGGACCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001296454.1 |
CDS | 136..1626 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001309525.1 |
1 | ATGCCTGGAT ATTCTGACAG AGACCGCGGT CGTGACAGAG GTAGTTACAG CAGTGGACCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Black carp vasa identifies embryonic and gonadal germ cells. |
Evolution of complexity in the zebrafish synapse proteome. |
Identification and sexually dimorphic expression of vasa isoforms in Dabry's sturgeon (Acipenser dabryanus), and functional analysis of vasa 3'-untranslated region. |
Fatty liver disease induced by perfluorooctane sulfonate: Novel insight from transcriptome analysis. |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |