SLC9A3R1 cDNA ORF clone, Danio rerio(Zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	SLC9A3R1
Entrez Gene ID	327272
Full Name	solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1a
Synonyms	cb895,nherf1,slc9a3r1,slc9a3r2,wu:fd20a02,zgc:55541,zgc:77629
General protein information	Preferred Names solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1a Names Na(+)/H(+) exchange regulatory cofactor NHE-RF1 solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulatory factor 2 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1
Gene Type	protein-coding
Organism	Danio rerio(Zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_212707.2	NP_997872.2	Na(+)/H(+) exchange regulatory cofactor NHE-RF1
NM_212707.1	NP_997872.1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Slc9a3r1	NP_036160.1
Danio rerio (zebrafish)	slc9a3r1	NP_997872.1
	SLC9A3R1	XP_001092275.2
Rattus norvegicus (Norway rat)	Slc9a3r1	NP_067605.1
Xenopus tropicalis (tropical clawed frog)	slc9a3r1	NP_001006751.1
Pan troglodytes (chimpanzee)	SLC9A3R1	XP_511663.2
Danio rerio (zebrafish)	LOC100329719	XP_005174596.1
Homo sapiens (human)	SLC9A3R1	NP_004243.1
Canis lupus familiaris (dog)	SLC9A3R1	XP_540418.4
Gallus gallus (chicken)	SLC9A3R1	NP_001006424.1
Bos taurus (cattle)	SLC9A3R1	NP_001071320.1

Gene Ontology
Bibliography

Related articles in PubMed

Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)

The regulation of transcriptome responses in zebrafish embryo exposure to triadimefon.
Hsu LS, Chiou BH, Hsu TW, Wang CC, Chen SC
Environmental toxicology32(1)217-226(2017 Jan)

The PDZ Protein Na+/H+ Exchanger Regulatory Factor-1 (NHERF1) Regulates Planar Cell Polarity and Motile Cilia Organization.
Treat AC, Wheeler DS, Stolz DB, Tsang M, Friedman PA, Romero G
PloS one11(4)e0153144(2016)

Increase of hepatic fat accumulation by liver specific expression of Hepatitis B virus X protein in zebrafish.
Shieh YS, Chang YS, Hong JR, Chen LJ, Jou LK, Hsu CC, Her GM
Biochimica et biophysica acta1801(7)721-30(2010 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Results strongly support an important role for NHERF1 in the regulation of Planar Cell Polarity signaling and the development of functional motile cilia.
Title: The PDZ Protein Na+/H+ Exchanger Regulatory Factor-1 (NHERF1) Regulates Planar Cell Polarity and Motile Cilia Organization.

The following SLC9A3R1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SLC9A3R1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa03222	NM_212707.1 Latest version!	Danio rerio solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 (slc9a3r1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00
ODa151820	NM_212707.2 Latest version!	Danio rerio SLC9A3 regulator 1a (slc9a3r1a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$258.30 $369.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

SLC9A3R1 ( NM_212707.1 ) cDNA ORF clone, Danio rerio(Zebrafish) -> NP_997872.1 Danio rerio solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 (slc9a3r1), mRNA.

Price & Availability↑

CloneID	ODa03222
Clone ID Related Accession (Same CDS sequence)	NM_212707.1
Accession Version	NM_212707.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1161bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-25
Organism	Danio rerio(Zebrafish)
Product	Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Comment	PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC045377.1. ##Evidence-Data-START## Transcript exon combination :: BC045377.1, BC164812.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGTCCAGCG ACCTCAGGCC AAAGCTGTGC GTCTTAGAAA AAGGGGACAC CGGATACGGG 
TTTCATCTCC ACGGCGAGAA GAACAAGCCC GGTCAGTTCA TCCGTCATGT GGAGCCCGAC 
TCTCCGGCCG CCGCCGCCGG TCTGCTGGCC GGGGACAAAC TAGCTCTGGT CAACGGGGAA 
AATGTTGAGG ACGAGAAGCA TCAACAGGTG GTGTCCCGCA TACGAGACAC CGTGGGCAAA 
CTGGAGCTCG TGGTGTTGAA CGCAGAGACC GCAGAACTGC TGCTGAAGCA CAATTTGAAG 
TGCCAGAAAG AGTATGTGAC TGATGGGATA CCAATTCCTG CTGGATCCGA GCCTGAAGAT 
GAAGTGAAGA ACGGGACATC ATCCAGAGAA TCCACCCCAG TCCCGGAGAC AAATGGGGAC 
ATGCGCATAG ATAGACTCAG TGTGAGCTCC AAGGACTCGA AGAACGAGCT GCGTCCACGT 
CTCTGTCACA TAAAGAAAGG TGCCACCGGA TATGGCTTCA ATCTTCACAC AGAGAAAACA 
AAACCCGGCC AGTACATCAG GGCGGTGGAT GAGGACTCAC CGGCAGAGAA ATCTGGACTT 
CGGCCTCAAG ATAAAATAGT GCAGGTCAAT GGTATTTCTG TGCACACTAT GCAGCATTCA 
GAAGTGGTGG CGGCCATTAA AGCAGGAGGA GACGAGACCA AACTTCTAGT GGTGGATCCA 
GAAGCAGACG CTTTCTTCAT GAGCTGTGAA ATCCTGCCAA CCGAGGAGCA TCTCACAGGT 
CCACTTCCAG AGCCTATTCC CAGACGTGAA GCAGAAGAGC AGGTGAATGG AAAAGTTGTC 
CAGGAGGAAA AGCCTAAAGT AGCAATGAGT CTGTCGAGCT CCAGCACCTC CTCTAACACC 
TCCACCTCTG CAGCTCCGGC TCCGGCTCCG GCTTCAGCTC AGGCTCCAGC ATCAGCTCCG 
GCTCCAGCAT CAGCTCCGGC TCCAGCCATG GCTGCTGCAC CACAGGAGAA GGTGAAGGAG 
AAAGCCTCCA GCGCAGACGC AGGCCTGGCT CTGAACATGT CTCTTCAGCA GGCTAAAGAG 
CGCGCTCATC AGAAACGCTC CAACAAGAGA GCTCCGCAGA TGGACTGGAG CAAAAGAAAC 
GAGCTCTTCA GCAACCTCTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_997872.1
CDS	139..1299
Translation	MSSDLRPKLCVLEKGDTGYGFHLHGEKNKPGQFIRHVEPDSPAAAAGLLAGDKLALVNGENVEDEKHQQVVSRIRDTVGKLELVVLNAETAELLLKHNLKCQKEYVTDGIPIPAGSEPEDEVKNGTSSRESTPVPETNGDMRIDRLSVSSKDSKNELRPRLCHIKKGATGYGFNLHTEKTKPGQYIRAVDEDSPAEKSGLRPQDKIVQVNGISVHTMQHSEVVAAIKAGGDETKLLVVDPEADAFFMSCEILPTEEHLTGPLPEPIPRREAEEQVNGKVVQEEKPKVAMSLSSSSTSSNTSTSAAPAPAPASAQAPASAPAPASAPAPAMAAAPQEKVKEKASSADAGLALNMSLQQAKERAHQKRSNKRAPQMDWSKRNELFSNL

Target ORF information:

RefSeq Version	NM_212707.1
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1 (slc9a3r1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_212707.1

ORF Insert Sequence:

ATGTCCAGCG ACCTCAGGCC AAAGCTGTGC GTCTTAGAAA AAGGGGACAC CGGATACGGG 
TTTCATCTCC ACGGCGAGAA GAACAAGCCC GGTCAGTTCA TCCGTCATGT GGAGCCCGAC 
TCTCCGGCCG CCGCCGCCGG TCTGCTGGCC GGGGACAAAC TAGCTCTGGT CAACGGGGAA 
AATGTTGAGG ACGAGAAGCA TCAACAGGTG GTGTCCCGCA TACGAGACAC CGTGGGCAAA 
CTGGAGCTCG TGGTGTTGAA CGCAGAGACC GCAGAACTGC TGCTGAAGCA CAATTTGAAG 
TGCCAGAAAG AGTATGTGAC TGATGGGATA CCAATTCCTG CTGGATCCGA GCCTGAAGAT 
GAAGTGAAGA ACGGGACATC ATCCAGAGAA TCCACCCCAG TCCCGGAGAC AAATGGGGAC 
ATGCGCATAG ATAGACTCAG TGTGAGCTCC AAGGACTCGA AGAACGAGCT GCGTCCACGT 
CTCTGTCACA TAAAGAAAGG TGCCACCGGA TATGGCTTCA ATCTTCACAC AGAGAAAACA 
AAACCCGGCC AGTACATCAG GGCGGTGGAT GAGGACTCAC CGGCAGAGAA ATCTGGACTT 
CGGCCTCAAG ATAAAATAGT GCAGGTCAAT GGTATTTCTG TGCACACTAT GCAGCATTCA 
GAAGTGGTGG CGGCCATTAA AGCAGGAGGA GACGAGACCA AACTTCTAGT GGTGGATCCA 
GAAGCAGACG CTTTCTTCAT GAGCTGTGAA ATCCTGCCAA CCGAGGAGCA TCTCACAGGT 
CCACTTCCAG AGCCTATTCC CAGACGTGAA GCAGAAGAGC AGGTGAATGG AAAAGTTGTC 
CAGGAGGAAA AGCCTAAAGT AGCAATGAGT CTGTCGAGCT CCAGCACCTC CTCTAACACC 
TCCACCTCTG CAGCTCCGGC TCCGGCTCCG GCTTCAGCTC AGGCTCCAGC ATCAGCTCCG 
GCTCCAGCAT CAGCTCCGGC TCCAGCCATG GCTGCTGCAC CACAGGAGAA GGTGAAGGAG 
AAAGCCTCCA GCGCAGACGC AGGCCTGGCT CTGAACATGT CTCTTCAGCA GGCTAAAGAG 
CGCGCTCATC AGAAACGCTC CAACAAGAGA GCTCCGCAGA TGGACTGGAG CAAAAGAAAC 
GAGCTCTTCA GCAACCTCTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

SLC9A3R1 ( NM_212707.2 ) cDNA ORF clone, Danio rerio(Zebrafish) -> NP_997872.2 Danio rerio SLC9A3 regulator 1a (slc9a3r1a), mRNA.

Price & Availability↑

CloneID	ODa151820
Clone ID Related Accession (Same CDS sequence)	NM_212707.2
Accession Version	NM_212707.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1155bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-08-31
Organism	Danio rerio(zebrafish)
Product	Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH434174.1 and BC064290.1. On May 23, 2017 this sequence version replaced NM_212707.1. ##Evidence-Data-START## Transcript exon combination :: BC045377.1, GFIL01038886.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end.

ATGTCCAGCG ACCTCAGGCC AAAGCTGTGC GTCTTAGAAA AAGGGGACAC CGGATACGGG 
TTTCATCTCC ACGGCGAGAA GAACAAGCCC GGTCAGTTCA TCCGTCATGT GGAGCCCGAC 
TCTCCGGCCG CCGCCGCCGG TCTGCTGGCC GGGGACAAAC TAGCTCTGGT CAACGGGGAA 
AATGTTGAGG ACGAGAAGCA TCAACAGGTG GTGTCCCGCA TACGAGACAC CGTGGGCAAA 
CTGGAGCTCG TGGTGTTGAA CGCAGAGACC GCAGAACTGC TGCTGAAGCA CAATTTGAAG 
TGCCAGAAAG AGTATGTGAC TGATGGGATA CCAATTCCTG CTGGATCCGA GCCTGAAGAT 
GAAGTGAAGA ACGGGACATC ATCCAGAGAA TCCACCCCAG TCCCGGAGAC AAATGGGGAC 
ATGCGCATAG ATAGACTCAG TGTGAGCTCC AAGGACTCGA AGAACGAGCT GCGTCCACGT 
CTCTGTCACA TAAAGAAAGG TGCCACCGGA TATGGCTTCA ATCTTCACAC AGAGAAAACA 
AAACCCGGCC AGTACATCAG GGCGGTGGAT GAGGACTCAC CGGCAGAGAA ATCTGGACTT 
CGGCCTCAAG ATAAAATAGT GCAGGTCAAT GGTATTTCTG TGCACACTAT GCAGCATTCA 
GAAGTGGTGG CGGCCATTAA AGCAGGAGGA GACGAGACCA AACTTCTAGT GGTGGATCCA 
GAAGCAGACG CTTTCTTCAT GAGCTGTGAA ATCCTGCCAA CCGAGGAGCA TCTCACAGGT 
CCACTTCCAG AGCCTATTCC CAGACGTGAA GCAGAAGAGC AGGTGAATGG AAAAGTTGTC 
CAGGAGGAAA AGCCTAAAGT AGAAATGAGT CTGTCGAGCT CCAGCACCTC CTCTAACACC 
TCCACCTCTG CAGCTCCGGC TCCAGCATCA GCTCCGGCTC CAGCATCAGC TCCGGCTCCA 
GCATCAGCTC CGGCTCCAGC CATGGCTGCT GCACCACAGG AGAAGGTGAA GGAGAAAGCC 
TCCAGCGCAG ACGCAGGCCT GGCTCTGAAC ATGTCTCTTC AGCAGGCTAA AGAGCGCGCT 
CATCAGAAAC GCTCCAACAA GAGAGCTCCG CAGATGGACT GGAGCAAAAG AAACGAGCTC 
TTCAGCAACC TCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_997872.2
CDS	153..1307
Translation	MSSDLRPKLCVLEKGDTGYGFHLHGEKNKPGQFIRHVEPDSPAAAAGLLAGDKLALVNGENVEDEKHQQVVSRIRDTVGKLELVVLNAETAELLLKHNLKCQKEYVTDGIPIPAGSEPEDEVKNGTSSRESTPVPETNGDMRIDRLSVSSKDSKNELRPRLCHIKKGATGYGFNLHTEKTKPGQYIRAVDEDSPAEKSGLRPQDKIVQVNGISVHTMQHSEVVAAIKAGGDETKLLVVDPEADAFFMSCEILPTEEHLTGPLPEPIPRREAEEQVNGKVVQEEKPKVEMSLSSSSTSSNTSTSAAPAPASAPAPASAPAPASAPAPAMAAAPQEKVKEKASSADAGLALNMSLQQAKERAHQKRSNKRAPQMDWSKRNELFSNL

Target ORF information:

RefSeq Version	NM_212707.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio SLC9A3 regulator 1a (slc9a3r1a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_212707.2

ORF Insert Sequence:

ATGTCCAGCG ACCTCAGGCC AAAGCTGTGC GTCTTAGAAA AAGGGGACAC CGGATACGGG 
TTTCATCTCC ACGGCGAGAA GAACAAGCCC GGTCAGTTCA TCCGTCATGT GGAGCCCGAC 
TCTCCGGCCG CCGCCGCCGG TCTGCTGGCC GGGGACAAAC TAGCTCTGGT CAACGGGGAA 
AATGTTGAGG ACGAGAAGCA TCAACAGGTG GTGTCCCGCA TACGAGACAC CGTGGGCAAA 
CTGGAGCTCG TGGTGTTGAA CGCAGAGACC GCAGAACTGC TGCTGAAGCA CAATTTGAAG 
TGCCAGAAAG AGTATGTGAC TGATGGGATA CCAATTCCTG CTGGATCCGA GCCTGAAGAT 
GAAGTGAAGA ACGGGACATC ATCCAGAGAA TCCACCCCAG TCCCGGAGAC AAATGGGGAC 
ATGCGCATAG ATAGACTCAG TGTGAGCTCC AAGGACTCGA AGAACGAGCT GCGTCCACGT 
CTCTGTCACA TAAAGAAAGG TGCCACCGGA TATGGCTTCA ATCTTCACAC AGAGAAAACA 
AAACCCGGCC AGTACATCAG GGCGGTGGAT GAGGACTCAC CGGCAGAGAA ATCTGGACTT 
CGGCCTCAAG ATAAAATAGT GCAGGTCAAT GGTATTTCTG TGCACACTAT GCAGCATTCA 
GAAGTGGTGG CGGCCATTAA AGCAGGAGGA GACGAGACCA AACTTCTAGT GGTGGATCCA 
GAAGCAGACG CTTTCTTCAT GAGCTGTGAA ATCCTGCCAA CCGAGGAGCA TCTCACAGGT 
CCACTTCCAG AGCCTATTCC CAGACGTGAA GCAGAAGAGC AGGTGAATGG AAAAGTTGTC 
CAGGAGGAAA AGCCTAAAGT AGAAATGAGT CTGTCGAGCT CCAGCACCTC CTCTAACACC 
TCCACCTCTG CAGCTCCGGC TCCAGCATCA GCTCCGGCTC CAGCATCAGC TCCGGCTCCA 
GCATCAGCTC CGGCTCCAGC CATGGCTGCT GCACCACAGG AGAAGGTGAA GGAGAAAGCC 
TCCAGCGCAG ACGCAGGCCT GGCTCTGAAC ATGTCTCTTC AGCAGGCTAA AGAGCGCGCT 
CATCAGAAAC GCTCCAACAA GAGAGCTCCG CAGATGGACT GGAGCAAAAG AAACGAGCTC 
TTCAGCAACC TCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Evolution of complexity in the zebrafish synapse proteome.
Nature communications814613(2017 Mar)
Bay?s ?,Collins MO,Reig-Viader R,Gou G,Goulding D,Izquierdo A,Choudhary JS,Emes RD,Grant SG

The regulation of transcriptome responses in zebrafish embryo exposure to triadimefon.
Environmental toxicology32(1)217-226(2017 Jan)
Hsu LS,Chiou BH,Hsu TW,Wang CC,Chen SC

The PDZ Protein Na+/H+ Exchanger Regulatory Factor-1 (NHERF1) Regulates Planar Cell Polarity and Motile Cilia Organization.
PloS one11(4)e0153144(2016)
Treat AC,Wheeler DS,Stolz DB,Tsang M,Friedman PA,Romero G

Increase of hepatic fat accumulation by liver specific expression of Hepatitis B virus X protein in zebrafish.
Biochimica et biophysica acta1801(7)721-30(2010 Jul)
Shieh YS,Chang YS,Hong JR,Chen LJ,Jou LK,Hsu CC,Her GM