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chia.4 cDNA ORF clone, Danio rerio(zebrafish)

Summary

Gene Symbol chia.4
Entrez Gene ID 337333
Full Name chitinase, acidic.4
Synonyms CHIA,chioIIa,wu:fa55g10,zgc:63792
General protein information
Preferred Names

chitinase, acidic.4

Names

acidic chitinase
chia4
eosinophil chemotactic cytokine
Gene Type protein-coding
Organism Danio rerio(zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
NM_200446.1 NP_956740.1 acidic chitinase precursor
XM_021469756.1 XP_021325431.1 acidic chitinase isoform X1

Pathways from BioSystems


Homologies


Danio rerio (zebrafish) zgc:65788 NP_955897.2
Danio rerio (zebrafish) chia.4 NP_956740.1
Magnaporthe oryzae (rice blast fungus) MGG_01247 XP_003714154.1
Bos taurus (cattle) CHIA NP_777124.1
Gallus gallus (chicken) CHIA NP_989760.1
Danio rerio (zebrafish) chia.3 NP_998378.1
Homo sapiens (human) CHIA NP_970615.2
Xenopus tropicalis (tropical clawed frog) chia NP_001186489.1
CHIA XP_001104487.1
Canis lupus familiaris (dog) CHIA XP_537030.3
Mus musculus (house mouse) Chia1 NP_075675.2
Rattus norvegicus (Norway rat) Chia NP_997469.1
Danio rerio (zebrafish) zgc:173927 NP_001103511.1
Neurospora crassa NCU03209 XP_965309.2

Gene Ontology


Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Systematic discovery of novel ciliary genes through functional genomics in the zebrafish.
Choksi SP, Babu D, Lau D, Yu X, Roy S
Development (Cambridge, England)141(17)3410-9(2014 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following chia.4 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the chia.4 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa01882 NM_200446.1
Latest version!		 Danio rerio chitinase, acidic.4 (chia.4), mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $258.30
$369.00
ODa27564 XM_021469756.1
Latest version!		 Danio rerio chitinase, acidic.4 (chia.4), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 9-11 $258.30
$369.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
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2-4 Clone 40% OFF
5 or more Clone 50% OFF
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*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa01882
Clone ID Related Accession (Same CDS sequence) NM_200446.1
Accession Version NM_200446.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1428bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2020-01-04
Organism Danio rerio(zebrafish)
Product acidic chitinase precursor
Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC054942.1. ##Evidence-Data-START## Transcript exon combination :: BC054942.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA898399 [ECO:0000348] ##Evidence-Data-END## 

1
61
121
181
241
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361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGACCGGAT TAATTTTTCT AGCTGGCATT TCCTTGGCAT TGTGCCAATG TGGATTGGCG 
TCCCAACTTG CATGTTACTT CGCCAACTGG TCTCAGTACA GACCTGATGT TGGCAAGTAC 
ATGCCATCTA ATGTGGATCC ACATCTTTGC ACTCATTTAA TTTATGCCTT CTCCGTTATT 
AATATTAAAA ATAAATTGGC AACCTCCGAA TGGAATGATG AGACTCTTTA CCAGTCTTTC 
AATGCGCTAA AACAAAGCAA CCCCAACCTG AAAACTCTGT TGGCTGTCGG CACATTGAAC 
TTGGGCTCAA CTCAATTTAG CAGAATGGTG TCCACGCCAC AAAAGAGACA GACATTTATT 
GAGTCCAGTA TCAAATTCCT GAGGACCCAT GGATTCGATG GTCTGGATCT GGACTGGGAG 
TATCCTGGTT CTGGTGAAAG TCCTCCAGAA GACAAGCATA GATTCACTTT GCTCTGTAAG 
GAGCTTTTAA AAGCTTACCA GGCAGAGAGT AAAGCTACTA GACGCCCCAG ACTCATGCTC 
ACTGCTGCAG TGGCTGCTAG GAAAGGAATC ATTGATGCTG GTTATGAAAT TGCAGAAGTT 
AGCAAGTATT TGGATTTCAT CAATATCATG ACCTATGATT TCCACGGCTC ATGGGAGAAC 
GTTACTGGAC ACAACAGTCC TCTGTACAGA GACTCCAGAG ACACAGGAGA CCAAATCTAC 
TACAATACTG ACTTTGCAAT GACCTACTGG AGAGATCAGG GTGCTCCTGT GGAGAAGCTG 
AGGATGGGCT TTGCAGCATA CGGAAGGACG TTTTGCTTGT CATCTGCAGT CAATGGACTT 
GGAGCTCCAG TTAGTGGTCC AGCATCAGCT GGAACATACA CCAGAGAAGC TGGATACTGG 
TCCTATTATG AGATCTGTAC TTTCCTCCAA AGAGCCAGTG TGGAACAAAT TGCTGATCAG 
AAAGTTCCTT ATGCCACCGA AGGACTGAAC TGGGTGGGAT TTGATGACCA GAAAAGCTAC 
GAGACAAAGG TGGACTACCT GAAGGAGAAA GGCTTTGGAG GAGCTTTTGT CTGGTCTCTG 
GATCTTGATG ACTTTAGTGG TCAGTTCTGT GGGCAGGGCA AATACCCTCT TATTGGACAC 
CTCCACACGC TGCTTAATAT CAGCAACACT GAGTTCAGAC ACCTTCCAAA AACAATCAAG 
TCTGGTGGGG CATCGGCAAC AGGAAACATT GTTACCACAA CACCTATTGT AAAGACTGTT 
ACATCAGGAT CAGACTTCTG TGCGGGCGGA TTAGTGGGCA TCTTTGCAAA TCCAGATAAT 
CCCATGACAT TCATTCAGTG TGCCAATGGC AGGACCTTCA TACAGAATTG TCCTGCAAAG 
ACTGTCTTTG ATCCCGACTG CTCATGCTGT AACTGGCCAA AGAATTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_956740.1
CDS172..1599
Translation

Target ORF information:

RefSeq Version NM_200446.1
Organism Danio rerio(zebrafish)
Definition Danio rerio chitinase, acidic.4 (chia.4), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_200446.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGACCGGAT TAATTTTTCT AGCTGGCATT TCCTTGGCAT TGTGCCAATG TGGATTGGCG 
TCCCAACTTG CATGTTACTT CGCCAACTGG TCTCAGTACA GACCTGATGT TGGCAAGTAC 
ATGCCATCTA ATGTGGATCC ACATCTTTGC ACTCATTTAA TTTATGCCTT CTCCGTTATT 
AATATTAAAA ATAAATTGGC AACCTCCGAA TGGAATGATG AGACTCTTTA CCAGTCTTTC 
AATGCGCTAA AACAAAGCAA CCCCAACCTG AAAACTCTGT TGGCTGTCGG CACATTGAAC 
TTGGGCTCAA CTCAATTTAG CAGAATGGTG TCCACGCCAC AAAAGAGACA GACATTTATT 
GAGTCCAGTA TCAAATTCCT GAGGACCCAT GGATTCGATG GTCTGGATCT GGACTGGGAG 
TATCCTGGTT CTGGTGAAAG TCCTCCAGAA GACAAGCATA GATTCACTTT GCTCTGTAAG 
GAGCTTTTAA AAGCTTACCA GGCAGAGAGT AAAGCTACTA GACGCCCCAG ACTCATGCTC 
ACTGCTGCAG TGGCTGCTAG GAAAGGAATC ATTGATGCTG GTTATGAAAT TGCAGAAGTT 
AGCAAGTATT TGGATTTCAT CAATATCATG ACCTATGATT TCCACGGCTC ATGGGAGAAC 
GTTACTGGAC ACAACAGTCC TCTGTACAGA GACTCCAGAG ACACAGGAGA CCAAATCTAC 
TACAATACTG ACTTTGCAAT GACCTACTGG AGAGATCAGG GTGCTCCTGT GGAGAAGCTG 
AGGATGGGCT TTGCAGCATA CGGAAGGACG TTTTGCTTGT CATCTGCAGT CAATGGACTT 
GGAGCTCCAG TTAGTGGTCC AGCATCAGCT GGAACATACA CCAGAGAAGC TGGATACTGG 
TCCTATTATG AGATCTGTAC TTTCCTCCAA AGAGCCAGTG TGGAACAAAT TGCTGATCAG 
AAAGTTCCTT ATGCCACCGA AGGACTGAAC TGGGTGGGAT TTGATGACCA GAAAAGCTAC 
GAGACAAAGG TGGACTACCT GAAGGAGAAA GGCTTTGGAG GAGCTTTTGT CTGGTCTCTG 
GATCTTGATG ACTTTAGTGG TCAGTTCTGT GGGCAGGGCA AATACCCTCT TATTGGACAC 
CTCCACACGC TGCTTAATAT CAGCAACACT GAGTTCAGAC ACCTTCCAAA AACAATCAAG 
TCTGGTGGGG CATCGGCAAC AGGAAACATT GTTACCACAA CACCTATTGT AAAGACTGTT 
ACATCAGGAT CAGACTTCTG TGCGGGCGGA TTAGTGGGCA TCTTTGCAAA TCCAGATAAT 
CCCATGACAT TCATTCAGTG TGCCAATGGC AGGACCTTCA TACAGAATTG TCCTGCAAAG 
ACTGTCTTTG ATCCCGACTG CTCATGCTGT AACTGGCCAA AGAATTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa27564
Clone ID Related Accession (Same CDS sequence) XM_021469756.1
Accession Version XM_021469756.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1428bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2017-06-14
Organism Danio rerio(zebrafish)
Product acidic chitinase isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007134.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGACCGGAT TCATTTTTGT AGCTGGCATT TCCTTGGCAT TGTGCCAATG TGGATTGGCG 
TCCCAACTTG CATGTTACTT CGCCAACTGG TCTCAGTACA GACCTGATGT TGGCAAGTAC 
ATGCCATCTA GTGTGGATCC ACATCTTTGC ACTCATTTAA TTTATGCATT CTCTGTTATT 
AATATTAAAA ATAAATTGGC AACCTCCGAA TGGAATGATG AGACTCTTTA CCAGTCTTTC 
AATGCGCTAA AACAAAGCAA CCCCAACCTG AAAACTCTGT TGGCTGTCGG CACATTGAAC 
TTGGGCTCAA CTCAATTCAG CAGAATGGTG TCCACGCCAC AAAAGAGACG GACATTTATT 
GAGTCCAGTA TCAAATTCCT GAGGACCCAT GGATTCGATG GTCTGGATCT GGACTGGGAG 
TATCCTGGTT CTGGTGAAAG TCCTCCAGAA GACAAGCATA GATTCACTTT GCTCTGTAAG 
GAGCTTTTAA AAGCTTACCA GGCAGAGAGT AAAGCTACTA GACGCCCCAG ACTCATGCTC 
ACTGCTGCAG TGGCTGCTAG GAAAGGAATC ATTGATGCTG GTTATGAAAT TGCAGAAGTT 
AGCAAGTATT TGGATTTCAT CAATATCATG ACCTATGATT TCCACGGCTC ATGGGAGAAC 
GTTACTGGAC ACAACAGTCC TCTGTACAGA GACTCCAGAG ACACAGGAGA CCAAATCTAC 
TACAATACTG ACTTTGCAAT GACCTACTGG AGAGATCAGG GCGCTCCTGT GGAGAAGCTG 
AGGATGGGCT TTGCAGCATA TGGAAGGACG TTTTGCTTGT CATCTGCAGT CAATGGACTT 
GGAGCTCCAG TTAGTGGTCC AGCATCAGCT GGAACATACA CCAGAGAAGC TGGATACTGG 
TCCTATTATG AGATCTGTAC TTTCCTCCAA AGAGCCAGTG TGGAACAAAT TGCTGATCAG 
AAAGTTCCTT ATGCCACCGA AGGACTGAAC TGGGTGGGAT TTGATGACCA GAAAAGCTAC 
GAGACAAAGG TGGACTACCT GAAGGAGAAA GGCTTTGGAG GAGCTTTTGT CTGGTCTCTG 
GATCTTGATG ACTTCAGTGG TCAGTTCTGT GGGCAGGGCA AATACCCTCT TATTGGACAC 
CTCCACACGC TGCTTAATAT CAGCAACACT GAGTTCAGAC ACCTTCCAAA AACAATCAAG 
TCTGGTGGGG CATCGGCAAC AGGAAACATT GTTACCACAA CACCTATTGT AAAGACTGTT 
ACATCAGGAT CAGACTTCTG TGCGGGCGGA TTAGTGGGCA TCTTTGCAAA TCCAGATAAT 
CCCATGACAT TCATTCAGTG TGCCAATGGC AGGACCTTCA TACAGAATTG TCCTGCAAAG 
ACTGTCTTTG ATCCCGACTG CTCATGCTGT AACTGGCCAA AGAATTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_021325431.1
CDS288..1715
Translation

Target ORF information:

RefSeq Version XM_021469756.1
Organism Danio rerio(zebrafish)
Definition Danio rerio chitinase, acidic.4 (chia.4), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_021469756.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
ATGACCGGAT TCATTTTTGT AGCTGGCATT TCCTTGGCAT TGTGCCAATG TGGATTGGCG 
TCCCAACTTG CATGTTACTT CGCCAACTGG TCTCAGTACA GACCTGATGT TGGCAAGTAC 
ATGCCATCTA GTGTGGATCC ACATCTTTGC ACTCATTTAA TTTATGCATT CTCTGTTATT 
AATATTAAAA ATAAATTGGC AACCTCCGAA TGGAATGATG AGACTCTTTA CCAGTCTTTC 
AATGCGCTAA AACAAAGCAA CCCCAACCTG AAAACTCTGT TGGCTGTCGG CACATTGAAC 
TTGGGCTCAA CTCAATTCAG CAGAATGGTG TCCACGCCAC AAAAGAGACG GACATTTATT 
GAGTCCAGTA TCAAATTCCT GAGGACCCAT GGATTCGATG GTCTGGATCT GGACTGGGAG 
TATCCTGGTT CTGGTGAAAG TCCTCCAGAA GACAAGCATA GATTCACTTT GCTCTGTAAG 
GAGCTTTTAA AAGCTTACCA GGCAGAGAGT AAAGCTACTA GACGCCCCAG ACTCATGCTC 
ACTGCTGCAG TGGCTGCTAG GAAAGGAATC ATTGATGCTG GTTATGAAAT TGCAGAAGTT 
AGCAAGTATT TGGATTTCAT CAATATCATG ACCTATGATT TCCACGGCTC ATGGGAGAAC 
GTTACTGGAC ACAACAGTCC TCTGTACAGA GACTCCAGAG ACACAGGAGA CCAAATCTAC 
TACAATACTG ACTTTGCAAT GACCTACTGG AGAGATCAGG GCGCTCCTGT GGAGAAGCTG 
AGGATGGGCT TTGCAGCATA TGGAAGGACG TTTTGCTTGT CATCTGCAGT CAATGGACTT 
GGAGCTCCAG TTAGTGGTCC AGCATCAGCT GGAACATACA CCAGAGAAGC TGGATACTGG 
TCCTATTATG AGATCTGTAC TTTCCTCCAA AGAGCCAGTG TGGAACAAAT TGCTGATCAG 
AAAGTTCCTT ATGCCACCGA AGGACTGAAC TGGGTGGGAT TTGATGACCA GAAAAGCTAC 
GAGACAAAGG TGGACTACCT GAAGGAGAAA GGCTTTGGAG GAGCTTTTGT CTGGTCTCTG 
GATCTTGATG ACTTCAGTGG TCAGTTCTGT GGGCAGGGCA AATACCCTCT TATTGGACAC 
CTCCACACGC TGCTTAATAT CAGCAACACT GAGTTCAGAC ACCTTCCAAA AACAATCAAG 
TCTGGTGGGG CATCGGCAAC AGGAAACATT GTTACCACAA CACCTATTGT AAAGACTGTT 
ACATCAGGAT CAGACTTCTG TGCGGGCGGA TTAGTGGGCA TCTTTGCAAA TCCAGATAAT 
CCCATGACAT TCATTCAGTG TGCCAATGGC AGGACCTTCA TACAGAATTG TCCTGCAAAG 
ACTGTCTTTG ATCCCGACTG CTCATGCTGT AACTGGCCAA AGAATTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J


book

Systematic discovery of novel ciliary genes through functional genomics in the zebrafish.
Development (Cambridge, England)141(17)3410-9(2014 Sep)
Choksi SP,Babu D,Lau D,Yu X,Roy S