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cops5 cDNA ORF clone, Danio rerio(zebrafish)

Summary

Gene Symbol cops5
Entrez Gene ID 393698
Full Name COP9 signalosome subunit 5
Synonyms zgc:73130
General protein information
Preferred Names

COP9 signalosome subunit 5

Names

COP9 signalosome complex subunit 5
COP9 constitutive photomorphogenic homolog subunit 5
signalosome subunit 5
Gene Type protein-coding
Organism Danio rerio(zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
NM_200725.1 NP_957019.1 COP9 signalosome complex subunit 5

Pathways from BioSystems


Homologies


Homo sapiens (human) COPS5 NP_006828.2
Bos taurus (cattle) COPS5 NP_001179068.1
Anopheles gambiae (African malaria mosquito) AgaP_AGAP002880 XP_312032.5
Mus musculus (house mouse) Cops5 NP_038743.1
Arabidopsis thaliana (thale cress) CSN5B NP_177279.1
Oryza sativa (rice) Os04g0654700 NP_001054112.1
Xenopus tropicalis (tropical clawed frog) cops5 NP_989109.1
Pan troglodytes (chimpanzee) COPS5 XP_001162723.1
Canis lupus familiaris (dog) COPS5 XP_005638087.1
Gallus gallus (chicken) COPS5 NP_001034400.1
Drosophila melanogaster (fruit fly) CSN5 NP_477442.1
Caenorhabditis elegans (roundworm) csn-5 NP_500841.1
Magnaporthe oryzae (rice blast fungus) MGG_05274 XP_003712833.1
Neurospora crassa NCU00467 XP_956786.1
COPS5 XP_001097856.1
Rattus norvegicus (Norway rat) Cops5 NP_001020866.1
Danio rerio (zebrafish) cops5 NP_957019.1
Arabidopsis thaliana (thale cress) CSN5A NP_173705.1

Gene Ontology


Bibliography

Related articles in PubMed

The role of jab1, a putative downstream effector of the neurotrophic cytokine macrophage migration inhibitory factor (MIF) in zebrafish inner ear hair cell development.
Weber LJ, Marcy HK, Shen YC, Tomkovich SE, Brooks KM, Hilk KE, Barald KF
Experimental neurology(2017 Sep)

Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Benzo[a]pyrene exposure influences the cardiac development and the expression of cardiovascular relative genes in zebrafish (Danio rerio) embryos.
Huang L, Wang C, Zhang Y, Li J, Zhong Y, Zhou Y, Chen Y, Zuo Z
Chemosphere87(4)369-75(2012 Apr)

Genome-wide loss-of-function analysis of deubiquitylating enzymes for zebrafish development.
Tse WK, Eisenhaber B, Ho SH, Ng Q, Eisenhaber F, Jiang YJ
BMC genomics10637(2009 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following cops5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the cops5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa02904 NM_200725.1
Latest version!		 Danio rerio COP9 signalosome subunit 5 (cops5), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $258.30
$369.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa02904
Clone ID Related Accession (Same CDS sequence) NM_200725.1
Accession Version NM_200725.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1005bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2019-12-25
Organism Danio rerio(zebrafish)
Product COP9 signalosome complex subunit 5
Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC059493.1. ##Evidence-Data-START## Transcript exon combination :: EE684876.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGCTGGCA GTAGCATAGC GATGAAAACA TGGGAGCTGT CAAACAGCAT GCAGGAAGTT 
CAGAGTATCG ACGAAATATA TAAATATGAC AAAAAACAAC AACAAGAAAT TCTGGCGGCC 
AAACCGTGGA CTAAAGATCA TCATTATTTT AAATACTGCA AGCTATCGGC GTTGGCACTG 
CTGAAGATGG TGATGCACGC TAGATCTGGA GGAAACCTGG AGGTGATGGG ACTTATGCTG 
GGGAAGGTGG ATGGAGAGAC CATGATCATC ATGGACAGTT TTGCTTTACC AGTGGAAGGC 
ACTGAAACCA GAGTCAACGC TCAGGCTGCA GCCTATGAAT ACATGGCTGC TTATATAGAG 
AATGCTAAAC AGGTGGGGCG GTTGGAGAAT GCCATTGGAT GGTACCACAG TCATCCAGGA 
TACGGCTGCT GGCTTTCAGG CATAGATGTC AGCACTCAGA TGCTTAACCA GCAGTTTCAA 
GAGCCCTTTG TCGCAGTAGT GATCGATCCC ACAAGGACTA TATCCGCAGG GAAGGTCAAT 
CTTGGAGCTT TCAGGACATA TCCGAAGGGT TACAAGCCTC CAGATGAGGG TCCTTCTGAA 
TACCAGACGA TACCTCTTAA CAAAATTGAG GATTTTGGAG TGCATTGCAA ACAGTATTAT 
GCATTAGAAG TGTCTTATTT TAAGTCTTCC CTGGACCGCA AACTCCTAGA GCTGCTGTGG 
AATAAGTATT GGGTCAACAC TTTGAGCTCC TCAAGCCTAC TGACAAATGC AGACTACACC 
ACCGGACAGG TGTTTGACTT GTCTGAGAAG CTGGAGCAGG CGGAAGCGCA GCTGGGACGA 
GGCAGCTTCA TGCTGGGCTT GGACACACAT GATAGAAAAT CTGAGGACAA ACTAGCAAAG 
GCAACACGTG ACAGCTGCAA AACAACCATT GAAGCGATTC ATGGTTTGAT GTCCCAGGTA 
ATCAAAGATA AACTCTTCAA TCAAGTGAAC ACATCTGCCA ACTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_957019.1
CDS181..1185
Translation

Target ORF information:

RefSeq Version NM_200725.1
Organism Danio rerio(zebrafish)
Definition Danio rerio COP9 signalosome subunit 5 (cops5), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_200725.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGCTGGCA GTAGCATAGC GATGAAAACA TGGGAGCTGT CAAACAGCAT GCAGGAAGTT 
CAGAGTATCG ACGAAATATA TAAATATGAC AAAAAACAAC AACAAGAAAT TCTGGCGGCC 
AAACCGTGGA CTAAAGATCA TCATTATTTT AAATACTGCA AGCTATCGGC GTTGGCACTG 
CTGAAGATGG TGATGCACGC TAGATCTGGA GGAAACCTGG AGGTGATGGG ACTTATGCTG 
GGGAAGGTGG ATGGAGAGAC CATGATCATC ATGGACAGTT TTGCTTTACC AGTGGAAGGC 
ACTGAAACCA GAGTCAACGC TCAGGCTGCA GCCTATGAAT ACATGGCTGC TTATATAGAG 
AATGCTAAAC AGGTGGGGCG GTTGGAGAAT GCCATTGGAT GGTACCACAG TCATCCAGGA 
TACGGCTGCT GGCTTTCAGG CATAGATGTC AGCACTCAGA TGCTTAACCA GCAGTTTCAA 
GAGCCCTTTG TCGCAGTAGT GATCGATCCC ACAAGGACTA TATCCGCAGG GAAGGTCAAT 
CTTGGAGCTT TCAGGACATA TCCGAAGGGT TACAAGCCTC CAGATGAGGG TCCTTCTGAA 
TACCAGACGA TACCTCTTAA CAAAATTGAG GATTTTGGAG TGCATTGCAA ACAGTATTAT 
GCATTAGAAG TGTCTTATTT TAAGTCTTCC CTGGACCGCA AACTCCTAGA GCTGCTGTGG 
AATAAGTATT GGGTCAACAC TTTGAGCTCC TCAAGCCTAC TGACAAATGC AGACTACACC 
ACCGGACAGG TGTTTGACTT GTCTGAGAAG CTGGAGCAGG CGGAAGCGCA GCTGGGACGA 
GGCAGCTTCA TGCTGGGCTT GGACACACAT GATAGAAAAT CTGAGGACAA ACTAGCAAAG 
GCAACACGTG ACAGCTGCAA AACAACCATT GAAGCGATTC ATGGTTTGAT GTCCCAGGTA 
ATCAAAGATA AACTCTTCAA TCAAGTGAAC ACATCTGCCA ACTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

The role of jab1, a putative downstream effector of the neurotrophic cytokine macrophage migration inhibitory factor (MIF) in zebrafish inner ear hair cell development.
Experimental neurology(2017 Sep)
Weber LJ,Marcy HK,Shen YC,Tomkovich SE,Brooks KM,Hilk KE,Barald KF


book

Evolution of complexity in the zebrafish synapse proteome.
Nature communications814613(2017 Mar)
Bay?s ?,Collins MO,Reig-Viader R,Gou G,Goulding D,Izquierdo A,Choudhary JS,Emes RD,Grant SG


book

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R


book

Benzo[a]pyrene exposure influences the cardiac development and the expression of cardiovascular relative genes in zebrafish (Danio rerio) embryos.
Chemosphere87(4)369-75(2012 Apr)
Huang L,Wang C,Zhang Y,Li J,Zhong Y,Zhou Y,Chen Y,Zuo Z


book

Genome-wide loss-of-function analysis of deubiquitylating enzymes for zebrafish development.
BMC genomics10637(2009 Dec)
Tse WK,Eisenhaber B,Ho SH,Ng Q,Eisenhaber F,Jiang YJ