Gene Symbol | topbp1 |
Entrez Gene ID | 407679 |
Full Name | DNA topoisomerase II binding protein 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » topbp1 cDNA ORF clone
Gene Symbol | topbp1 |
Entrez Gene ID | 407679 |
Full Name | DNA topoisomerase II binding protein 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_009297292.2 | XP_009295567.1 | DNA topoisomerase 2-binding protein 1 isoform X1 |
XM_005162567.2 | XP_005162624.1 | DNA topoisomerase 2-binding protein 1 isoform X1 |
XM_017353819.1 | XP_017209308.1 | DNA topoisomerase 2-binding protein 1 isoform X2 |
XM_005162567.3 | XP_005162624.1 | DNA topoisomerase 2-binding protein 1 isoform X1 |
XM_009297292.3 | XP_009295567.1 | DNA topoisomerase 2-binding protein 1 isoform X1 |
XM_017353819.2 | XP_017209308.1 | DNA topoisomerase 2-binding protein 1 isoform X2 |
NM_001199738.1 | NP_001186667.1 | DNA topoisomerase 2-binding protein 1 |
Bos taurus (cattle) | TOPBP1 | NP_001193695.1 |
Rattus norvegicus (Norway rat) | Topbp1 | XP_236578.6 |
Homo sapiens (human) | TOPBP1 | NP_008958.2 |
Danio rerio (zebrafish) | topbp1 | NP_001186667.1 |
Xenopus tropicalis (tropical clawed frog) | topbp1 | XP_004915426.1 |
TOPBP1 | XP_001112636.2 | |
Mus musculus (house mouse) | Topbp1 | NP_795953.2 |
Gallus gallus (chicken) | TOPBP1 | XP_418794.1 |
Pan troglodytes (chimpanzee) | TOPBP1 | XP_516761.3 |
Canis lupus familiaris (dog) | TOPBP1 | XP_005634503.1 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
TopBP1 Governs Hematopoietic Stem/Progenitor Cells Survival in Zebrafish Definitive Hematopoiesis.
Gao L, Li D, Ma K, Zhang W, Xu T, Fu C, Jing C, Jia X, Wu S, Sun X, Dong M, Deng M, Chen Y, Zhu W, Peng J, Wan F, Zhou Y, Zon LI, Pan W
PLoS genetics11(7)e1005346(2015 Jul)
A network of epigenetic regulators guides developmental haematopoiesis in vivo.
Huang HT, Kathrein KL, Barton A, Gitlin Z, Huang YH, Ward TP, Hofmann O, Dibiase A, Song A, Tyekucheva S, Hide W, Zhou Y, Zon LI
Nature cell biology15(12)1516-25(2013 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following topbp1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the topbp1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa57587 | |
Clone ID Related Accession (Same CDS sequence) | XM_017353819.1 , XM_017353819.2 | |
Accession Version | XM_017353819.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4560bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | DNA topoisomerase 2-binding protein 1 isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017209308.1 |
CDS | 227..4786 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017353819.1 |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa57587 | |
Clone ID Related Accession (Same CDS sequence) | XM_017353819.1 , XM_017353819.2 | |
Accession Version | XM_017353819.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4560bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | DNA topoisomerase 2-binding protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017353819.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017209308.1 |
CDS | 256..4815 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017353819.2 |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa28353 | |
Clone ID Related Accession (Same CDS sequence) | NM_001199738.1 | |
Accession Version | NM_001199738.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4581bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-11-23 | |
Organism | Danio rerio(zebrafish) | |
Product | DNA topoisomerase 2-binding protein 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX649325.3. On Dec 17, 2010 this sequence version replaced XR_029693.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001186667.1 |
CDS | 1..4581 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001199738.1 |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa28354 | |
Clone ID Related Accession (Same CDS sequence) | XM_009297292.2 , XM_005162567.2 , XM_005162567.3 , XM_009297292.3 | |
Accession Version | XM_009297292.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4563bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | DNA topoisomerase 2-binding protein 1 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009297292.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009295567.1 |
CDS | 216..4778 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009297292.2 |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa28354 | |
Clone ID Related Accession (Same CDS sequence) | XM_009297292.2 , XM_005162567.2 , XM_005162567.3 , XM_009297292.3 | |
Accession Version | XM_005162567.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4563bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | DNA topoisomerase 2-binding protein 1 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005162567.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005162624.1 |
CDS | 227..4789 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005162567.2 |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa28354 | |
Clone ID Related Accession (Same CDS sequence) | XM_009297292.2 , XM_005162567.2 , XM_005162567.3 , XM_009297292.3 | |
Accession Version | XM_005162567.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4563bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | DNA topoisomerase 2-binding protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005162567.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005162624.1 |
CDS | 256..4818 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005162567.3 |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa28354 | |
Clone ID Related Accession (Same CDS sequence) | XM_009297292.2 , XM_005162567.2 , XM_005162567.3 , XM_009297292.3 | |
Accession Version | XM_009297292.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4563bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | DNA topoisomerase 2-binding protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_009297292.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009295567.1 |
CDS | 245..4807 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009297292.3 |
1 | ATGTCGAAAG CCAGCAAGGA TGCATACATT GTGAAGTTTG TTGAAAGCAA TGGACAAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |
RFX transcription factors are essential for hearing in mice. |
TopBP1 Governs Hematopoietic Stem/Progenitor Cells Survival in Zebrafish Definitive Hematopoiesis. |
A network of epigenetic regulators guides developmental haematopoiesis in vivo. |