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zgc:92335 cDNA ORF clone, Danio rerio(zebrafish)

Summary

Gene Symbol zgc:92335
Entrez Gene ID 436726
Full Name zgc:92335
General protein information
Preferred Names

zgc:92335

Names

methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
Gene Type protein-coding
Organism Danio rerio(zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_021469315.1 XP_021324990.1 methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria isoform X1
NM_001002453.1 NP_001002453.1 methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria

Pathways from BioSystems


Homologies


Homo sapiens (human) MMADHC NP_056517.1
Bos taurus (cattle) MMADHC NP_001029713.1
Gallus gallus (chicken) MMADHC NP_001008477.1
Caenorhabditis elegans (roundworm) Y76A2B.5 NP_499801.1
MMADHC XP_001082223.1
Mus musculus (house mouse) Mmadhc NP_598600.1
Rattus norvegicus (Norway rat) Mmadhc NP_001004280.1
Xenopus tropicalis (tropical clawed frog) mmadhc NP_001016731.1
Pan troglodytes (chimpanzee) MMADHC XP_001135306.1
Canis lupus familiaris (dog) MMADHC XP_849074.1
Danio rerio (zebrafish) zgc:92335 NP_001002453.1

Gene Ontology


Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following zgc:92335 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the zgc:92335 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa26778 NM_001002453.1
Latest version!		 Danio rerio zgc:92335 (zgc:92335), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $174.30
$249.00
ODa26778 XM_021469315.1
Latest version!		 Danio rerio zgc:92335 (zgc:92335), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $174.30
$249.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
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2-4 Clone 40% OFF
5 or more Clone 50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa26778
Clone ID Related Accession (Same CDS sequence) XM_021469315.1 , NM_001002453.1
Accession Version NM_001002453.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 876bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-11-23
Organism Danio rerio(zebrafish)
Product methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC076018.1. ##Evidence-Data-START## Transcript exon combination :: BC076018.1, CK026271.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
ATGGCGAGTG TGTTGTGCAG GAGGGTCAGG CAGGTGAGCC ACTCGTCTGT CGTTCACTCT 
TTGGCTCAGA AAATTCTGGC AGTTCGAGCG TTTTCAGCCG CAGGGTCGTC TGGATCAGAT 
GAGCCCTATA TTGCTGTACC GTCTCAAAAT ACAGGTCCTA GAACAGTGTG GCCAGATGAG 
GCGATGGGTC CGTTTGGTCC TCAAGACCAG CGCTTTCAGC TGCCAGGGAA CGTGGGTTTT 
GACTGTCACC TCAAGGGCAC AGAGTTACAG ATGAGCGGCC CGGTTCACAA GACGGTCCCG 
GATGTGCTGA GTGTCCCGTC AAGCACAGAG AGACACGAGT TCATCCTCGC ACAGTTCATC 
AACGAGTTTC AGGGTAAGGA AGCTTCAGTG GCGGTGCAGA GGGTCAGTAA AGCTGAACTG 
TACTTCAGTC AGTCTGATGT GGAGTGTTCA ATGCGCTCGT GCCCAGAGCT GCTGAAGAAA 
GAGTTAGAGC TGTTTTTCCC AGTTCTGCCC ACAAGTCCCA TCACTGTGGT CACTGTGATG 
CAGAAGAACC AGGAACTGAC CAGAGATCAG GAGGAACTAC TAGACAACTT TGTGAGCGGC 
GCTAAAGAAA TCTGCTTCAC ACTGTGGAGA GGAGGATACT GGGCCGATTT CATCAATCCA 
CTGTCAGGAA AAGCTTTTTT CGCAGTTCAG ACGCCGGACT CAATTCTCCA GCAGGACGTT 
CAGCATCACG CTGGCTTTCA CATCGAGGAT CTGGCATCCT GTACGGTCAT ACGACATGTT 
TTAAAGGGCA CATTTGTGCT CACGTTAATC ACTAACGCAC CTTCAAACAG TCTGATCATG 
GAGAAACTTC AAGGACACAC AGAGGACGGA GACTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001002453.1
CDS71..946
Translation

Target ORF information:

RefSeq Version NM_001002453.1
Organism Danio rerio(zebrafish)
Definition Danio rerio zgc:92335 (zgc:92335), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001002453.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
ATGGCGAGTG TGTTGTGCAG GAGGGTCAGG CAGGTGAGCC ACTCGTCTGT CGTTCACTCT 
TTGGCTCAGA AAATTCTGGC AGTTCGAGCG TTTTCAGCCG CAGGGTCGTC TGGATCAGAT 
GAGCCCTATA TTGCTGTACC GTCTCAAAAT ACAGGTCCTA GAACAGTGTG GCCAGATGAG 
GCGATGGGTC CGTTTGGTCC TCAAGACCAG CGCTTTCAGC TGCCAGGGAA CGTGGGTTTT 
GACTGTCACC TCAAGGGCAC AGAGTTACAG ATGAGCGGCC CGGTTCACAA GACGGTCCCG 
GATGTGCTGA GTGTCCCGTC AAGCACAGAG AGACACGAGT TCATCCTCGC ACAGTTCATC 
AACGAGTTTC AGGGTAAGGA AGCTTCAGTG GCGGTGCAGA GGGTCAGTAA AGCTGAACTG 
TACTTCAGTC AGTCTGATGT GGAGTGTTCA ATGCGCTCGT GCCCAGAGCT GCTGAAGAAA 
GAGTTAGAGC TGTTTTTCCC AGTTCTGCCC ACAAGTCCCA TCACTGTGGT CACTGTGATG 
CAGAAGAACC AGGAACTGAC CAGAGATCAG GAGGAACTAC TAGACAACTT TGTGAGCGGC 
GCTAAAGAAA TCTGCTTCAC ACTGTGGAGA GGAGGATACT GGGCCGATTT CATCAATCCA 
CTGTCAGGAA AAGCTTTTTT CGCAGTTCAG ACGCCGGACT CAATTCTCCA GCAGGACGTT 
CAGCATCACG CTGGCTTTCA CATCGAGGAT CTGGCATCCT GTACGGTCAT ACGACATGTT 
TTAAAGGGCA CATTTGTGCT CACGTTAATC ACTAACGCAC CTTCAAACAG TCTGATCATG 
GAGAAACTTC AAGGACACAC AGAGGACGGA GACTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa26778
Clone ID Related Accession (Same CDS sequence) XM_021469315.1 , NM_001002453.1
Accession Version XM_021469315.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 876bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2017-06-14
Organism Danio rerio(zebrafish)
Product methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007133.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
ATGGCGAGTG TGTTGTGCAG GAGGGTCAGG CAGGTGAGCC ACTCGTCTGT CGTTCACTCT 
TTGGCTCAGA AAATTCTGGC AGTTCGAGCG TTTTCAGCCG CAGGGTCGTC TGGATCAGAT 
GAGCCCTATA TTGCTGTACC GTCTCAAAAT ACAGGTCCTA GAACAGTGTG GCCAGATGAG 
GCGATGGGTC CGTTTGGTCC TCAAGACCAG CGCTTTCAGC TGCCAGGGAA CGTGGGTTTT 
GACTGTCACC TCAAGGGCAC AGAGTTACAG ATGAGCGGCC CGGTTCACAA GACGGTCCCG 
GATGTGCTGA GTGTCCCGTC AAGCACAGAG AGACACGAGT TCATCCTCGC ACAGTTCATC 
AACGAGTTTC AGGGTAAGGA AGCTTCAGTG GCGGTGCAGA GGGTCAGTAA AGCTGAACTG 
TACTTCAGTC AGTCTGATGT GGAGTGTTCA ATGCGCTCGT GCCCAGAGCT GCTGAAGAAA 
GAGTTAGAGC TGTTTTTCCC AGTTCTGCCC ACAAGTCCCA TCACTGTGGT CACTGTGATG 
CAGAAGAACC AGGAACTGAC CAGAGATCAG GAGGAACTAC TAGACAACTT TGTGAGCGGC 
GCTAAAGAAA TCTGCTTCAC ACTGTGGAGA GGAGGATACT GGGCCGATTT CATCAATCCA 
CTGTCAGGAA AAGCTTTTTT CGCAGTTCAG ACGCCGGACT CAATTCTCCA GCAGGACGTT 
CAGCATCACG CTGGCTTTCA CATCGAGGAT CTGGCATCCT GTACGGTCAT ACGACATGTT 
TTAAAGGGCA CATTTGTGCT CACGTTAATC ACTAACGCAC CTTCAAACAG TCTGATCATG 
GAGAAACTTC AAGGACACAC AGAGGACGGA GACTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_021324990.1
CDS181..1056
Translation

Target ORF information:

RefSeq Version XM_021469315.1
Organism Danio rerio(zebrafish)
Definition Danio rerio zgc:92335 (zgc:92335), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_021469315.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
ATGGCGAGTG TGTTGTGCAG GAGGGTCAGG CAGGTGAGCC ACTCGTCTGT CGTTCACTCT 
TTGGCTCAGA AAATTCTGGC AGTTCGAGCG TTTTCAGCCG CAGGGTCGTC TGGATCAGAT 
GAGCCCTATA TTGCTGTACC GTCTCAAAAT ACAGGTCCTA GAACAGTGTG GCCAGATGAG 
GCGATGGGTC CGTTTGGTCC TCAAGACCAG CGCTTTCAGC TGCCAGGGAA CGTGGGTTTT 
GACTGTCACC TCAAGGGCAC AGAGTTACAG ATGAGCGGCC CGGTTCACAA GACGGTCCCG 
GATGTGCTGA GTGTCCCGTC AAGCACAGAG AGACACGAGT TCATCCTCGC ACAGTTCATC 
AACGAGTTTC AGGGTAAGGA AGCTTCAGTG GCGGTGCAGA GGGTCAGTAA AGCTGAACTG 
TACTTCAGTC AGTCTGATGT GGAGTGTTCA ATGCGCTCGT GCCCAGAGCT GCTGAAGAAA 
GAGTTAGAGC TGTTTTTCCC AGTTCTGCCC ACAAGTCCCA TCACTGTGGT CACTGTGATG 
CAGAAGAACC AGGAACTGAC CAGAGATCAG GAGGAACTAC TAGACAACTT TGTGAGCGGC 
GCTAAAGAAA TCTGCTTCAC ACTGTGGAGA GGAGGATACT GGGCCGATTT CATCAATCCA 
CTGTCAGGAA AAGCTTTTTT CGCAGTTCAG ACGCCGGACT CAATTCTCCA GCAGGACGTT 
CAGCATCACG CTGGCTTTCA CATCGAGGAT CTGGCATCCT GTACGGTCAT ACGACATGTT 
TTAAAGGGCA CATTTGTGCT CACGTTAATC ACTAACGCAC CTTCAAACAG TCTGATCATG 
GAGAAACTTC AAGGACACAC AGAGGACGGA GACTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J


book

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R