Gene Symbol |
zgc:92335 |
Entrez Gene ID |
436726 |
Full Name |
zgc:92335 |
General protein information |
- Preferred Names
zgc:92335
Names
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
|
Gene Type |
protein-coding |
Organism |
Danio rerio(zebrafish) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
XM_021469315.1 |
XP_021324990.1 |
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria isoform X1 |
NM_001002453.1 |
NP_001002453.1 |
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria |
Homo sapiens (human) |
MMADHC |
NP_056517.1 |
Bos taurus (cattle) |
MMADHC |
NP_001029713.1 |
Gallus gallus (chicken) |
MMADHC |
NP_001008477.1 |
Caenorhabditis elegans (roundworm) |
Y76A2B.5 |
NP_499801.1 |
|
MMADHC |
XP_001082223.1 |
Mus musculus (house mouse) |
Mmadhc |
NP_598600.1 |
Rattus norvegicus (Norway rat) |
Mmadhc |
NP_001004280.1 |
Xenopus tropicalis (tropical clawed frog) |
mmadhc |
NP_001016731.1 |
Pan troglodytes (chimpanzee) |
MMADHC |
XP_001135306.1 |
Canis lupus familiaris (dog) |
MMADHC |
XP_849074.1 |
Danio rerio (zebrafish) |
zgc:92335 |
NP_001002453.1 |
Related articles in PubMed
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following zgc:92335 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the zgc:92335 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
ODa26778 |
Clone ID Related Accession (Same CDS sequence) |
XM_021469315.1
, NM_001002453.1
|
Accession Version |
NM_001002453.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 876bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2018-11-23 |
Organism |
Danio rerio(zebrafish) |
Product |
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC076018.1.
##Evidence-Data-START##
Transcript exon combination :: BC076018.1, CK026271.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGGCGAGTG TGTTGTGCAG GAGGGTCAGG CAGGTGAGCC ACTCGTCTGT CGTTCACTCT TTGGCTCAGA AAATTCTGGC AGTTCGAGCG TTTTCAGCCG CAGGGTCGTC TGGATCAGAT GAGCCCTATA TTGCTGTACC GTCTCAAAAT ACAGGTCCTA GAACAGTGTG GCCAGATGAG GCGATGGGTC CGTTTGGTCC TCAAGACCAG CGCTTTCAGC TGCCAGGGAA CGTGGGTTTT GACTGTCACC TCAAGGGCAC AGAGTTACAG ATGAGCGGCC CGGTTCACAA GACGGTCCCG GATGTGCTGA GTGTCCCGTC AAGCACAGAG AGACACGAGT TCATCCTCGC ACAGTTCATC AACGAGTTTC AGGGTAAGGA AGCTTCAGTG GCGGTGCAGA GGGTCAGTAA AGCTGAACTG TACTTCAGTC AGTCTGATGT GGAGTGTTCA ATGCGCTCGT GCCCAGAGCT GCTGAAGAAA GAGTTAGAGC TGTTTTTCCC AGTTCTGCCC ACAAGTCCCA TCACTGTGGT CACTGTGATG CAGAAGAACC AGGAACTGAC CAGAGATCAG GAGGAACTAC TAGACAACTT TGTGAGCGGC GCTAAAGAAA TCTGCTTCAC ACTGTGGAGA GGAGGATACT GGGCCGATTT CATCAATCCA CTGTCAGGAA AAGCTTTTTT CGCAGTTCAG ACGCCGGACT CAATTCTCCA GCAGGACGTT CAGCATCACG CTGGCTTTCA CATCGAGGAT CTGGCATCCT GTACGGTCAT ACGACATGTT TTAAAGGGCA CATTTGTGCT CACGTTAATC ACTAACGCAC CTTCAAACAG TCTGATCATG GAGAAACTTC AAGGACACAC AGAGGACGGA GACTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001002453.1 |
CDS | 71..946 |
Translation | |
Target ORF information:
RefSeq Version | NM_001002453.1 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio zgc:92335 (zgc:92335), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001002453.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGGCGAGTG TGTTGTGCAG GAGGGTCAGG CAGGTGAGCC ACTCGTCTGT CGTTCACTCT TTGGCTCAGA AAATTCTGGC AGTTCGAGCG TTTTCAGCCG CAGGGTCGTC TGGATCAGAT GAGCCCTATA TTGCTGTACC GTCTCAAAAT ACAGGTCCTA GAACAGTGTG GCCAGATGAG GCGATGGGTC CGTTTGGTCC TCAAGACCAG CGCTTTCAGC TGCCAGGGAA CGTGGGTTTT GACTGTCACC TCAAGGGCAC AGAGTTACAG ATGAGCGGCC CGGTTCACAA GACGGTCCCG GATGTGCTGA GTGTCCCGTC AAGCACAGAG AGACACGAGT TCATCCTCGC ACAGTTCATC AACGAGTTTC AGGGTAAGGA AGCTTCAGTG GCGGTGCAGA GGGTCAGTAA AGCTGAACTG TACTTCAGTC AGTCTGATGT GGAGTGTTCA ATGCGCTCGT GCCCAGAGCT GCTGAAGAAA GAGTTAGAGC TGTTTTTCCC AGTTCTGCCC ACAAGTCCCA TCACTGTGGT CACTGTGATG CAGAAGAACC AGGAACTGAC CAGAGATCAG GAGGAACTAC TAGACAACTT TGTGAGCGGC GCTAAAGAAA TCTGCTTCAC ACTGTGGAGA GGAGGATACT GGGCCGATTT CATCAATCCA CTGTCAGGAA AAGCTTTTTT CGCAGTTCAG ACGCCGGACT CAATTCTCCA GCAGGACGTT CAGCATCACG CTGGCTTTCA CATCGAGGAT CTGGCATCCT GTACGGTCAT ACGACATGTT TTAAAGGGCA CATTTGTGCT CACGTTAATC ACTAACGCAC CTTCAAACAG TCTGATCATG GAGAAACTTC AAGGACACAC AGAGGACGGA GACTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa26778 |
Clone ID Related Accession (Same CDS sequence) |
XM_021469315.1
, NM_001002453.1
|
Accession Version |
XM_021469315.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 876bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2017-06-14 |
Organism |
Danio rerio(zebrafish) |
Product |
methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007133.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGGCGAGTG TGTTGTGCAG GAGGGTCAGG CAGGTGAGCC ACTCGTCTGT CGTTCACTCT TTGGCTCAGA AAATTCTGGC AGTTCGAGCG TTTTCAGCCG CAGGGTCGTC TGGATCAGAT GAGCCCTATA TTGCTGTACC GTCTCAAAAT ACAGGTCCTA GAACAGTGTG GCCAGATGAG GCGATGGGTC CGTTTGGTCC TCAAGACCAG CGCTTTCAGC TGCCAGGGAA CGTGGGTTTT GACTGTCACC TCAAGGGCAC AGAGTTACAG ATGAGCGGCC CGGTTCACAA GACGGTCCCG GATGTGCTGA GTGTCCCGTC AAGCACAGAG AGACACGAGT TCATCCTCGC ACAGTTCATC AACGAGTTTC AGGGTAAGGA AGCTTCAGTG GCGGTGCAGA GGGTCAGTAA AGCTGAACTG TACTTCAGTC AGTCTGATGT GGAGTGTTCA ATGCGCTCGT GCCCAGAGCT GCTGAAGAAA GAGTTAGAGC TGTTTTTCCC AGTTCTGCCC ACAAGTCCCA TCACTGTGGT CACTGTGATG CAGAAGAACC AGGAACTGAC CAGAGATCAG GAGGAACTAC TAGACAACTT TGTGAGCGGC GCTAAAGAAA TCTGCTTCAC ACTGTGGAGA GGAGGATACT GGGCCGATTT CATCAATCCA CTGTCAGGAA AAGCTTTTTT CGCAGTTCAG ACGCCGGACT CAATTCTCCA GCAGGACGTT CAGCATCACG CTGGCTTTCA CATCGAGGAT CTGGCATCCT GTACGGTCAT ACGACATGTT TTAAAGGGCA CATTTGTGCT CACGTTAATC ACTAACGCAC CTTCAAACAG TCTGATCATG GAGAAACTTC AAGGACACAC AGAGGACGGA GACTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_021324990.1 |
CDS | 181..1056 |
Translation | |
Target ORF information:
RefSeq Version | XM_021469315.1 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio zgc:92335 (zgc:92335), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_021469315.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGGCGAGTG TGTTGTGCAG GAGGGTCAGG CAGGTGAGCC ACTCGTCTGT CGTTCACTCT TTGGCTCAGA AAATTCTGGC AGTTCGAGCG TTTTCAGCCG CAGGGTCGTC TGGATCAGAT GAGCCCTATA TTGCTGTACC GTCTCAAAAT ACAGGTCCTA GAACAGTGTG GCCAGATGAG GCGATGGGTC CGTTTGGTCC TCAAGACCAG CGCTTTCAGC TGCCAGGGAA CGTGGGTTTT GACTGTCACC TCAAGGGCAC AGAGTTACAG ATGAGCGGCC CGGTTCACAA GACGGTCCCG GATGTGCTGA GTGTCCCGTC AAGCACAGAG AGACACGAGT TCATCCTCGC ACAGTTCATC AACGAGTTTC AGGGTAAGGA AGCTTCAGTG GCGGTGCAGA GGGTCAGTAA AGCTGAACTG TACTTCAGTC AGTCTGATGT GGAGTGTTCA ATGCGCTCGT GCCCAGAGCT GCTGAAGAAA GAGTTAGAGC TGTTTTTCCC AGTTCTGCCC ACAAGTCCCA TCACTGTGGT CACTGTGATG CAGAAGAACC AGGAACTGAC CAGAGATCAG GAGGAACTAC TAGACAACTT TGTGAGCGGC GCTAAAGAAA TCTGCTTCAC ACTGTGGAGA GGAGGATACT GGGCCGATTT CATCAATCCA CTGTCAGGAA AAGCTTTTTT CGCAGTTCAG ACGCCGGACT CAATTCTCCA GCAGGACGTT CAGCATCACG CTGGCTTTCA CATCGAGGAT CTGGCATCCT GTACGGTCAT ACGACATGTT TTAAAGGGCA CATTTGTGCT CACGTTAATC ACTAACGCAC CTTCAAACAG TCTGATCATG GAGAAACTTC AAGGACACAC AGAGGACGGA GACTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J |
 |
RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R |