Gene Symbol |
BORCS5 |
Entrez Gene ID |
449650 |
Full Name |
BLOC-1 related complex subunit 5 |
Synonyms |
im:7155461,loh12cr1,zgc:92915 |
General protein information |
- Preferred Names
BLOC-1 related complex subunit 5
Names
BLOC-1-related complex subunit 5 loss of heterozygosity 12 chromosomal region 1 protein homolog loss of heterozygosity, 12, chromosomal region 1 homolog
|
Gene Type |
protein-coding |
Organism |
Danio rerio(Zebrafish) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
XM_005163008.4 |
XP_005163065.1 |
BLOC-1-related complex subunit 5 isoform X1 |
NM_001007052.2 |
NP_001007053.1 |
BLOC-1-related complex subunit 5 |
XM_005163008.3 |
XP_005163065.1 |
loss of heterozygosity 12 chromosomal region 1 protein homolog isoform X1 |
Homo sapiens (human) |
LOH12CR1 |
NP_477517.1 |
Mus musculus (house mouse) |
Loh12cr1 |
NP_080647.2 |
|
LOH12CR1 |
XP_001084966.1 |
Bos taurus (cattle) |
LOH12CR1 |
NP_001069823.1 |
Gallus gallus (chicken) |
LOH12CR1 |
NP_001026528.1 |
Canis lupus familiaris (dog) |
LOH12CR1 |
XP_005637192.1 |
Drosophila melanogaster (fruit fly) |
CG11802 |
NP_572759.1 |
Pan troglodytes (chimpanzee) |
LOH12CR1 |
XP_001139139.2 |
Rattus norvegicus (Norway rat) |
Loh12cr1 |
NP_001102120.1 |
Danio rerio (zebrafish) |
loh12cr1 |
NP_001007053.1 |
Anopheles gambiae (African malaria mosquito) |
AgaP_AGAP009657 |
XP_001689139.1 |
Xenopus tropicalis (tropical clawed frog) |
loh12cr1 |
NP_001106433.1 |
Related articles in PubMed
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following BORCS5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the BORCS5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
ODa00035 |
Clone ID Related Accession (Same CDS sequence) |
NM_001007052.2
|
Accession Version |
NM_001007052.2 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 624bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-01-18 |
Organism |
Danio rerio(zebrafish) |
Product |
BLOC-1-related complex subunit 5 |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC083541.1. On Aug 31, 2012 this sequence version replaced NM_001007052.1.
##Evidence-Data-START##
Transcript exon combination :: BC083541.1 [ECO:0000332]
RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601
| ATGGGTGCTG AACAGAGTGG AGATGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC ACCTTTCAGC CTCTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TCCGATATCA GGATCATCTG CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT CTCTTCTGGA TGTTACCAAT GGAGCACATC ACTTTTGCAC TGGATTGCTT ATCGTATGCC TGGATCAGGT GTTTCCTGGC GTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001007053.1 |
CDS | 70..693 |
Translation | |
Target ORF information:
RefSeq Version | NM_001007052.2 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio BLOC-1 related complex subunit 5 (borcs5), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001007052.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601
| ATGGGTGCTG AACAGAGTGG AGATGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC ACCTTTCAGC CTCTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TCCGATATCA GGATCATCTG CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT CTCTTCTGGA TGTTACCAAT GGAGCACATC ACTTTTGCAC TGGATTGCTT ATCGTATGCC TGGATCAGGT GTTTCCTGGC GTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa29344 |
Clone ID Related Accession (Same CDS sequence) |
XM_005163008.4
, XM_005163008.3
|
Accession Version |
XM_005163008.4 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 588bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2017-06-14 |
Organism |
Danio rerio(zebrafish) |
Product |
BLOC-1-related complex subunit 5 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007136.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 15, 2017 this sequence version replaced XM_005163008.3.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541
| ATGGGTGCTG AGCAGAGTGG AGACGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC ACCTTTCAGC CACTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TAAGATATCA GGATCATCTG CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT GAGCGGCTGG AGCCTTTCAG CATGAAACCT GATGGAGATA GCAAATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005163065.1 |
CDS | 273..860 |
Translation | |
Target ORF information:
RefSeq Version | XM_005163008.4 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio BLOC-1 related complex subunit 5 (borcs5), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005163008.4 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541
| ATGGGTGCTG AGCAGAGTGG AGACGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC ACCTTTCAGC CACTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TAAGATATCA GGATCATCTG CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT GAGCGGCTGG AGCCTTTCAG CATGAAACCT GATGGAGATA GCAAATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa29344 |
Clone ID Related Accession (Same CDS sequence) |
XM_005163008.4
, XM_005163008.3
|
Accession Version |
XM_005163008.3 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 588bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-06-23 |
Organism |
Danio rerio(Zebrafish) |
Product |
loss of heterozygosity 12 chromosomal region 1 protein homolog isoform X1 |
Comment |
MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007136.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 24, 2016 this sequence version replaced XM_005163008.2.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 105
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541
| ATGGGTGCTG AGCAGAGTGG AGACGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC ACCTTTCAGC CACTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TAAGATATCA GGATCATCTG CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT GAGCGGCTGG AGCCTTTCAG CATGAAACCT GATGGAGATA GCAAATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005163065.1 |
CDS | 269..856 |
Translation | |
Target ORF information:
RefSeq Version | XM_005163008.3 |
Organism | Danio rerio(Zebrafish) |
Definition | Danio rerio BLOC-1 related complex subunit 5 (borcs5), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005163008.3 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541
| ATGGGTGCTG AGCAGAGTGG AGACGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC ACCTTTCAGC CACTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TAAGATATCA GGATCATCTG CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT GAGCGGCTGG AGCCTTTCAG CATGAAACCT GATGGAGATA GCAAATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
 |
RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R |