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BORCS5 cDNA ORF clone, Danio rerio(Zebrafish)

Summary

Gene Symbol BORCS5
Entrez Gene ID 449650
Full Name BLOC-1 related complex subunit 5
Synonyms im:7155461,loh12cr1,zgc:92915
General protein information
Preferred Names

BLOC-1 related complex subunit 5

Names

BLOC-1-related complex subunit 5
loss of heterozygosity 12 chromosomal region 1 protein homolog
loss of heterozygosity, 12, chromosomal region 1 homolog
Gene Type protein-coding
Organism Danio rerio(Zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_005163008.4 XP_005163065.1 BLOC-1-related complex subunit 5 isoform X1
NM_001007052.2 NP_001007053.1 BLOC-1-related complex subunit 5
XM_005163008.3 XP_005163065.1 loss of heterozygosity 12 chromosomal region 1 protein homolog isoform X1

Pathways from BioSystems


Homologies


Homo sapiens (human) LOH12CR1 NP_477517.1
Mus musculus (house mouse) Loh12cr1 NP_080647.2
LOH12CR1 XP_001084966.1
Bos taurus (cattle) LOH12CR1 NP_001069823.1
Gallus gallus (chicken) LOH12CR1 NP_001026528.1
Canis lupus familiaris (dog) LOH12CR1 XP_005637192.1
Drosophila melanogaster (fruit fly) CG11802 NP_572759.1
Pan troglodytes (chimpanzee) LOH12CR1 XP_001139139.2
Rattus norvegicus (Norway rat) Loh12cr1 NP_001102120.1
Danio rerio (zebrafish) loh12cr1 NP_001007053.1
Anopheles gambiae (African malaria mosquito) AgaP_AGAP009657 XP_001689139.1
Xenopus tropicalis (tropical clawed frog) loh12cr1 NP_001106433.1

Gene Ontology


Bibliography

Related articles in PubMed

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following BORCS5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the BORCS5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa00035 NM_001007052.2
Latest version!		 Danio rerio BLOC-1 related complex subunit 5 (borcs5), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $174.30
$249.00
ODa29344 XM_005163008.4
Latest version!		 Danio rerio BLOC-1 related complex subunit 5 (borcs5), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $104.30
$149.00
View Old Accession Versions >>
ODa29344 XM_005163008.3 Danio rerio BLOC-1 related complex subunit 5 (borcs5), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $104.30
$149.00
Hide Old Accession Versions >>

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa00035
Clone ID Related Accession (Same CDS sequence) NM_001007052.2
Accession Version NM_001007052.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 624bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2019-01-18
Organism Danio rerio(zebrafish)
Product BLOC-1-related complex subunit 5
Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC083541.1. On Aug 31, 2012 this sequence version replaced NM_001007052.1. ##Evidence-Data-START## Transcript exon combination :: BC083541.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
ATGGGTGCTG AACAGAGTGG AGATGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT 
GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA 
ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC 
ACCTTTCAGC CTCTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT 
TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TCCGATATCA GGATCATCTG 
CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG 
ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC 
AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG 
ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT 
CTCTTCTGGA TGTTACCAAT GGAGCACATC ACTTTTGCAC TGGATTGCTT ATCGTATGCC 
TGGATCAGGT GTTTCCTGGC GTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001007053.1
CDS70..693
Translation

Target ORF information:

RefSeq Version NM_001007052.2
Organism Danio rerio(zebrafish)
Definition Danio rerio BLOC-1 related complex subunit 5 (borcs5), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001007052.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
ATGGGTGCTG AACAGAGTGG AGATGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT 
GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA 
ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC 
ACCTTTCAGC CTCTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT 
TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TCCGATATCA GGATCATCTG 
CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG 
ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC 
AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG 
ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT 
CTCTTCTGGA TGTTACCAAT GGAGCACATC ACTTTTGCAC TGGATTGCTT ATCGTATGCC 
TGGATCAGGT GTTTCCTGGC GTAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa29344
Clone ID Related Accession (Same CDS sequence) XM_005163008.4 , XM_005163008.3
Accession Version XM_005163008.4 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 588bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2017-06-14
Organism Danio rerio(zebrafish)
Product BLOC-1-related complex subunit 5 isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007136.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005163008.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
ATGGGTGCTG AGCAGAGTGG AGACGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT 
GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA 
ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC 
ACCTTTCAGC CACTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT 
TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TAAGATATCA GGATCATCTG 
CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG 
ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC 
AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG 
ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT 
GAGCGGCTGG AGCCTTTCAG CATGAAACCT GATGGAGATA GCAAATAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_005163065.1
CDS273..860
Translation

Target ORF information:

RefSeq Version XM_005163008.4
Organism Danio rerio(zebrafish)
Definition Danio rerio BLOC-1 related complex subunit 5 (borcs5), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_005163008.4

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
ATGGGTGCTG AGCAGAGTGG AGACGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT 
GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA 
ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC 
ACCTTTCAGC CACTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT 
TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TAAGATATCA GGATCATCTG 
CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG 
ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC 
AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG 
ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT 
GAGCGGCTGG AGCCTTTCAG CATGAAACCT GATGGAGATA GCAAATAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa29344
Clone ID Related Accession (Same CDS sequence) XM_005163008.4 , XM_005163008.3
Accession Version XM_005163008.3 Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 588bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-06-23
Organism Danio rerio(Zebrafish)
Product loss of heterozygosity 12 chromosomal region 1 protein homolog isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007136.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005163008.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
ATGGGTGCTG AGCAGAGTGG AGACGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT 
GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA 
ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC 
ACCTTTCAGC CACTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT 
TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TAAGATATCA GGATCATCTG 
CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG 
ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC 
AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG 
ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT 
GAGCGGCTGG AGCCTTTCAG CATGAAACCT GATGGAGATA GCAAATAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_005163065.1
CDS269..856
Translation

Target ORF information:

RefSeq Version XM_005163008.3
Organism Danio rerio(Zebrafish)
Definition Danio rerio BLOC-1 related complex subunit 5 (borcs5), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_005163008.3

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
ATGGGTGCTG AGCAGAGTGG AGACGCAGAT CATAAACATT CAGACTTCAG TGCTTCAGTT 
GTACCCTCTC CAGCTAAGCA TAGAGCCAAA ATGGATGACA TAGTAGTGGT TGCTCAAGGA 
ACACAGTCGT TACGAAACAT CCACAATGAT CCTGATGTAA TAAAGCTACA GGAGATTCCC 
ACCTTTCAGC CACTACTGAA AGGTGTTCTC AGTGGACAAA CCTCCCCCAG CACTGTGTGT 
TTAGAAAAGC TGGATTCAGC ACAGGTCCTG CAACTGTGTG TAAGATATCA GGATCATCTG 
CACCAGTGTG CGGAGGCTGT TGCATTTGAC CAGAATGCTT TGGTCAAGAG GATCAAAGAG 
ATGGACCTGT CAGTCGAGGC GCTGTTCAGC ATCATGCAGG AAAGGCAAAA GCGGTACGCC 
AAATACGCCG AGCAGATCCA AAAGGTCAAT GAGATGTCGA TGATTCTGAG ACGTATTCAG 
ATGGGGATCG ACCAGACTGT ACCACTCATG GAGCGCCTCA ACAACATGCT GCCCGAGAGT 
GAGCGGCTGG AGCCTTTCAG CATGAAACCT GATGGAGATA GCAAATAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R