Gene Symbol | capns1a |
Entrez Gene ID | 550598 |
Full Name | calpain, small subunit 1 a |
Synonyms | capns1,cb616,wu:fb81g08,wu:fl09e04,zgc:110603 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » capns1a cDNA ORF clone
gRNAs
Gene Symbol | capns1a |
Entrez Gene ID | 550598 |
Full Name | calpain, small subunit 1 a |
Synonyms | capns1,cb616,wu:fb81g08,wu:fl09e04,zgc:110603 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
NM_001017899.2 | NP_001017899.2 | calpain small subunit 1 |
LOC712561 | XP_002808235.1 | |
Rattus norvegicus (Norway rat) | LOC100911363 | XP_003748884.1 |
Danio rerio (zebrafish) | capns1a | NP_001017899.2 |
Danio rerio (zebrafish) | capns1b | NP_001103176.1 |
Homo sapiens (human) | CAPNS1 | NP_001003962.1 |
Pan troglodytes (chimpanzee) | CAPNS1 | XP_003953505.1 |
Xenopus tropicalis (tropical clawed frog) | capns2 | NP_001016161.1 |
Canis lupus familiaris (dog) | CAPNS1 | XP_853634.1 |
Mus musculus (house mouse) | Capns1 | NP_033925.2 |
Rattus norvegicus (Norway rat) | Capns1 | NP_058814.1 |
Bos taurus (cattle) | CAPNS1 | NP_776686.1 |
Rattus norvegicus (Norway rat) | LOC100912380 | XP_003748875.2 |
Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
Phenotype anchoring in zebrafish reveals a potential role for matrix metalloproteinases (MMPs) in tamoxifen's effects on skin epithelium.
Bugel SM, Wehmas LC, La Du JK, Tanguay RL
Toxicology and applied pharmacology29631-41(2016 Apr)
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following capns1a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the capns1a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa30754 | |
Clone ID Related Accession (Same CDS sequence) | NM_001017899.2 | |
Accession Version | NM_001017899.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 651bp) Protein sequence SNP |
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Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-01-26 | |
Organism | Danio rerio(zebrafish) | |
Product | calpain small subunit 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CB352301.1, CV490399.1 and BC092946.1. On Apr 11, 2006 this sequence version replaced NM_001017899.1. ##Evidence-Data-START## Transcript exon combination :: EH452258.1, EH591200.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTTCTTGC TCAAGAAAGC CATTGGGGGT GTTATTGATG TGATCGGCAA CATCGACCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001017899.2 |
CDS | 164..814 |
Translation |
Target ORF information:
Target ORF information:
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1 | ATGTTCTTGC TCAAGAAAGC CATTGGGGGT GTTATTGATG TGATCGGCAA CATCGACCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Evolution of complexity in the zebrafish synapse proteome. |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |
Phenotype anchoring in zebrafish reveals a potential role for matrix metalloproteinases (MMPs) in tamoxifen's effects on skin epithelium. |
RFX transcription factors are essential for hearing in mice. |