Gene Symbol | zfyve27 |
Entrez Gene ID | 561659 |
Full Name | zinc finger, FYVE domain containing 27 |
Synonyms | im:7137347,zgc:153156 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » zfyve27 cDNA ORF clone
Gene Symbol | zfyve27 |
Entrez Gene ID | 561659 |
Full Name | zinc finger, FYVE domain containing 27 |
Synonyms | im:7137347,zgc:153156 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_009294827.2 | XP_009293102.1 | protrudin isoform X1 |
XM_009294848.2 | XP_009293123.1 | protrudin isoform X3 |
XM_009294859.2 | XP_009293134.1 | protrudin isoform X4 |
XM_009294848.3 | XP_009293123.1 | protrudin isoform X2 |
NM_001077291.2 | NP_001070759.2 | protrudin |
XM_005160177.4 | XP_005160234.1 | protrudin isoform X1 |
XM_005160177.3 | XP_005160234.1 | protrudin isoform X2 |
XM_009294859.3 | XP_009293134.1 | protrudin isoform X3 |
Pan troglodytes (chimpanzee) | ZFYVE27 | XP_001165164.2 |
ZFYVE27 | XP_001105442.1 | |
Rattus norvegicus (Norway rat) | Zfyve27 | NP_954535.2 |
Danio rerio (zebrafish) | zfyve27 | NP_001070759.2 |
Canis lupus familiaris (dog) | ZFYVE27 | XP_543954.2 |
Mus musculus (house mouse) | Zfyve27 | NP_796293.2 |
Homo sapiens (human) | ZFYVE27 | NP_001002261.1 |
Bos taurus (cattle) | ZFYVE27 | NP_001017939.1 |
Gallus gallus (chicken) | ZFYVE27 | NP_001034393.1 |
Xenopus tropicalis (tropical clawed frog) | zfyve27 | NP_001116926.1 |
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
Role of spastin and protrudin in neurite outgrowth.
Zhang C, Li D, Ma Y, Yan J, Yang B, Li P, Yu A, Lu C, Ma X
Journal of cellular biochemistry113(7)2296-307(2012 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following zfyve27 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the zfyve27 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa00304 | |
Clone ID Related Accession (Same CDS sequence) | NM_001077291.2 | |
Accession Version | NM_001077291.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1230bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-11-23 | |
Organism | Danio rerio(zebrafish) | |
Product | protrudin | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL929150.13. On or before Dec 12, 2008 this sequence version replaced XM_685068.2, NM_001077291.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC124649.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001070759.2 |
CDS | 130..1359 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001077291.2 |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa06273 | |
Clone ID Related Accession (Same CDS sequence) | XM_005160177.4 , XM_005160177.3 | |
Accession Version | XM_005160177.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | protrudin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005160177.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005160234.1 |
CDS | 221..1507 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005160177.4 |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa06273 | |
Clone ID Related Accession (Same CDS sequence) | XM_005160177.4 , XM_005160177.3 | |
Accession Version | XM_005160177.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1287bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | protrudin isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005160177.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005160234.1 |
CDS | 216..1502 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005160177.3 |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa43569 | |
Clone ID Related Accession (Same CDS sequence) | XM_009294827.2 | |
Accession Version | XM_009294827.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1329bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | protrudin isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009294827.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009293102.1 |
CDS | 216..1544 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009294827.2 |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa43570 | |
Clone ID Related Accession (Same CDS sequence) | XM_009294848.2 , XM_009294848.3 | |
Accession Version | XM_009294848.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1272bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | protrudin isoform X3 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009294848.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009293123.1 |
CDS | 216..1487 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009294848.2 |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa43570 | |
Clone ID Related Accession (Same CDS sequence) | XM_009294848.2 , XM_009294848.3 | |
Accession Version | XM_009294848.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1272bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | protrudin isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_009294848.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009293123.1 |
CDS | 221..1492 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009294848.3 |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa43571 | |
Clone ID Related Accession (Same CDS sequence) | XM_009294859.2 , XM_009294859.3 | |
Accession Version | XM_009294859.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1251bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | protrudin isoform X4 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009294859.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009293134.1 |
CDS | 216..1466 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009294859.2 |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa43571 | |
Clone ID Related Accession (Same CDS sequence) | XM_009294859.2 , XM_009294859.3 | |
Accession Version | XM_009294859.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1251bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | protrudin isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_009294859.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_009293134.1 |
CDS | 221..1471 |
Translation |
Target ORF information:
Target ORF information:
|
XM_009294859.3 |
1 | ATGCAGTGCT CCGCCTCCTC TCCTCAGGAG CCTCCGCAGG CGAGCGCTGA GCGGCCTGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RFX transcription factors are essential for hearing in mice. |
Role of spastin and protrudin in neurite outgrowth. |