Gene Symbol | SHQ1 |
Entrez Gene ID | 567601 |
Full Name | SHQ1, H/ACA ribonucleoprotein assembly factor |
Synonyms | zgc:158255 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
ORF » Species Summary » Danio rerio » SHQ1 cDNA ORF clone
gRNAs
Gene Symbol | SHQ1 |
Entrez Gene ID | 567601 |
Full Name | SHQ1, H/ACA ribonucleoprotein assembly factor |
Synonyms | zgc:158255 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(Zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_005166052.3 | XP_005166109.1 | protein SHQ1 homolog isoform X1 |
XM_017356510.1 | XP_017211999.1 | protein SHQ1 homolog isoform X2 |
NM_001080600.2 | NP_001074069.2 | protein SHQ1 homolog |
XM_005166052.2 | XP_005166109.1 | protein SHQ1 homolog isoform X1 |
Bos taurus (cattle) | SHQ1 | NP_001030221.1 |
Rattus norvegicus (Norway rat) | Shq1 | NP_001128185.1 |
Danio rerio (zebrafish) | shq1 | NP_001074069.1 |
Xenopus tropicalis (tropical clawed frog) | shq1 | NP_001072616.1 |
Pan troglodytes (chimpanzee) | SHQ1 | XP_001141951.1 |
Mus musculus (house mouse) | Shq1 | NP_853621.2 |
Kluyveromyces lactis | KLLA0F03949g | XP_455259.1 |
Homo sapiens (human) | SHQ1 | NP_060600.2 |
SHQ1 | XP_001082636.1 | |
Caenorhabditis elegans (roundworm) | CELE_Y48A5A.1 | NP_500150.2 |
Saccharomyces cerevisiae (baker's yeast) | SHQ1 | NP_012162.3 |
Canis lupus familiaris (dog) | SHQ1 | XP_533763.2 |
Gallus gallus (chicken) | SHQ1 | XP_004944749.1 |
Eremothecium gossypii | AGOS_ADL230C | NP_983866.1 |
Schizosaccharomyces pombe (fission yeast) | shq1 | NP_595575.1 |
Functional visualization and disruption of targeted genes using CRISPR/Cas9-mediated eGFP reporter integration in zebrafish.
Ota S, Taimatsu K, Yanagi K, Namiki T, Ohga R, Higashijima SI, Kawahara A
Scientific reports634991(2016 Oct)
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
Drug screening in Scn1a zebrafish mutant identifies clemizole as a potential Dravet syndrome treatment.
Baraban SC, Dinday MT, Hortopan GA
Nature communications42410(2013)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following SHQ1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SHQ1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa12060 | |
Clone ID Related Accession (Same CDS sequence) | XM_005166052.3 , XM_005166052.2 | |
Accession Version | XM_005166052.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1188bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | protein SHQ1 homolog isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007117.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005166052.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATAACGC CGGCATTTGA ACTCAGTCAA GATGCAGATT TCCTCATTGT AGTTATTCGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005166109.1 |
CDS | 114..1301 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATAACGC CGGCATTTGA ACTCAGTCAA GATGCAGATT TCCTCATTGT AGTTATTCGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa12060 | |
Clone ID Related Accession (Same CDS sequence) | XM_005166052.3 , XM_005166052.2 | |
Accession Version | XM_005166052.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1188bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | protein SHQ1 homolog isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007117.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005166052.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATAACGC CGGCATTTGA ACTCAGTCAA GATGCAGATT TCCTCATTGT AGTTATTCGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005166109.1 |
CDS | 112..1299 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATAACGC CGGCATTTGA ACTCAGTCAA GATGCAGATT TCCTCATTGT AGTTATTCGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa59377 | |
Clone ID Related Accession (Same CDS sequence) | XM_017356510.1 | |
Accession Version | XM_017356510.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1095bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | protein SHQ1 homolog isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007117.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATAACGC CGGCATTTGA ACTCAGTCAA GATGCAGATT TCCTCATTGT AGTTATTCGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017211999.1 |
CDS | 112..1206 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATAACGC CGGCATTTGA ACTCAGTCAA GATGCAGATT TCCTCATTGT AGTTATTCGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa98490 | |
Clone ID Related Accession (Same CDS sequence) | NM_001080600.2 | |
Accession Version | NM_001080600.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1761bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-25 | |
Organism | Danio rerio(zebrafish) | |
Product | protein SHQ1 homolog | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH518762.1, EH443650.1, EH469534.1 and BX546459.13. On Sep 1, 2015 this sequence version replaced NM_001080600.1. ##Evidence-Data-START## Transcript exon combination :: BC129178.1, GDQQ01008777.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGATAACGC CGGCATTTGA ACTCAGTCAA GATGCAGATT TCCTCATTGT AGTTATTCGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001074069.2 |
CDS | 113..1873 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGATAACGC CGGCATTTGA ACTCAGTCAA GATGCAGATT TCCTCATTGT AGTTATTCGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Functional visualization and disruption of targeted genes using CRISPR/Cas9-mediated eGFP reporter integration in zebrafish. |
RFX transcription factors are essential for hearing in mice. |
Drug screening in Scn1a zebrafish mutant identifies clemizole as a potential Dravet syndrome treatment. |