Gene Symbol |
hoxa1a |
Entrez Gene ID |
58051 |
Full Name |
homeobox A1a |
Synonyms |
Hox-a1,hoxa3a,id:ibd3526,z-4 |
General protein information |
- Preferred Names
homeobox A1a
Names
homeobox protein Hox-A1a homeo box A1a
|
Gene Type |
protein-coding |
Organism |
Danio rerio(zebrafish) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
NM_131536.2 |
NP_571611.1 |
homeobox protein Hox-A1a |
XM_017352263.1 |
XP_017207752.1 |
homeobox protein Hox-A1a isoform X1 |
XM_017352263.2 |
XP_017207752.1 |
homeobox protein Hox-A1a isoform X1 |
Pan troglodytes (chimpanzee) |
HOXA1 |
XP_519009.1 |
Mus musculus (house mouse) |
Hoxa1 |
NP_034579.3 |
Gallus gallus (chicken) |
HOXA1 |
XP_003640745.1 |
Homo sapiens (human) |
HOXA1 |
NP_005513.1 |
|
HOXA1 |
XP_001093148.1 |
Rattus norvegicus (Norway rat) |
LOC100911406 |
XP_003752224.1 |
Xenopus tropicalis (tropical clawed frog) |
hoxa1 |
NP_001008017.1 |
Bos taurus (cattle) |
HOXA1 |
NP_001193040.1 |
Canis lupus familiaris (dog) |
HOXA1 |
XP_005628713.1 |
Rattus norvegicus (Norway rat) |
Hoxa1 |
NP_037207.1 |
Danio rerio (zebrafish) |
hoxa1a |
NP_571611.1 |
Related articles in PubMed
Time point-based integrative analyses of deep-transcriptome identify four signal pathways in blastemal regeneration of zebrafish lower jaw.
Zhang H, Wang X, Lyu K, Gao S, Wang G, Fan C, Zhang XA, Yan J
Stem cells (Dayton, Ohio)33(3)806-18(2015 Mar)
Selective microRNA uridylation by Zcchc6 (TUT7) and Zcchc11 (TUT4).
Thornton JE, Du P, Jing L, Sjekloca L, Lin S, Grossi E, Sliz P, Zon LI, Gregory RI
Nucleic acids research42(18)11777-91(2014 Oct)
Hox clusters of the bichir (Actinopterygii, Polypterus senegalus) highlight unique patterns of sequence evolution in gnathostome phylogeny.
Raincrow JD, Dewar K, Stocsits C, Prohaska SJ, Amemiya CT, Stadler PF, Chiu CH
Journal of experimental zoology. Part B, Molecular and developmental evolution316(6)451-64(2011 Sep)
Retinoic acid-dependent establishment of positional information in the hindbrain was conserved during vertebrate evolution.
Ishioka A, Jindo T, Kawanabe T, Hatta K, Parvin MS, Nikaido M, Kuroyanagi Y, Takeda H, Yamasu K
Developmental biology350(1)154-68(2011 Feb)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following hoxa1a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the hoxa1a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
ODa03123 |
Clone ID Related Accession (Same CDS sequence) |
NM_131536.2
|
Accession Version |
NM_131536.2 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 990bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-12-27 |
Organism |
Danio rerio(zebrafish) |
Product |
homeobox protein Hox-A1a |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC162701.1. On Jul 14, 2013 this sequence version replaced NM_131536.1.
Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: BC162701.1, AJ306430.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMEA3505370, SAMEA3505373 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961
| ATGAGCACAT TCTTAGATTT TTCGTCCATA AGTGGTGGTG GAGATGGAGG TAGCGGGGGC TCGTGCTCAG TCAGGGCGTT CCACGGTGAT CACGGACTTT CAACATTCCA ATCGTCGTGT GCTGTTAGGT TAAATAGCTG CAGTGGAGAT GAACGGTTCA TGTCCAATAT ATCGTCACAA GATGTAATTA ACTCTCAGCC ACAACAGGCC GGCTCGTACC AGTCCCCCGG GACTTTGTCA ATTACCTACA GCGCCCATCC AAGTTATGGA ACTCAAAGTT TTTGCACTGG ATACAATCAC TATGCCCTAA ATCAGGACGT GGAATCGTCT GTGAGCTTTC CCCAGTGTGG CCCGTTAGTT TACTCTGGAA ATATTTCTTC CACTGTTGTG CAGCACCGTC ATCATCGTCA TGGTTACAGT AGCGGAAACG TTCACCTCCA TGGCCAGTTC CAGTACGGCT CAGCCACATA TGGTAATAGT TCGGATCAGG CAAACCTTAC GTTTGTGGCG GGCTGCTCAA ATCCGCTTTC CCCTCTGCAT GTGCCTCATC ATGATGCTTG TTGTTCACCT CTATCAGATG GCGTGCCCAC GGGACAGACA TTTGACTGGA TGAAGGTTAA ACGCAACCCG CCAAAAACAG GAAAAGCTGG GGAGTATGGA TTTGGTGGGC AGCCAAACAC TGTACGCACC AATTTTTCGA CAAAACAGCT GACAGAGCTT GAAAAGGAGT TTCATTTCAA TAAGTACTTG ACTCGCGCAA GGCGCGTGGA GATCGCGGCT TCTCTCCAAT TGAATGAGAC TCAGGTGAAG ATATGGTTTC AAAATCGCCG TATGAAACAA AAGAAGCGCG AAAAGGAAGG TCTTTTGCCG AAATCTTTGT CCGAACAGAA AGATGGTCTC GAAAAAACAG AGGATGCATC TGAAAAGTCG CCCTCTGCAC CATCCACGCC CTCTCCTTCA CCAACTGTTG AGGCATACTC CTCTAATTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_571611.1 |
CDS | 97..1086 |
Translation | |
Target ORF information:
RefSeq Version | NM_131536.2 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio homeobox A1a (hoxa1a), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_131536.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961
| ATGAGCACAT TCTTAGATTT TTCGTCCATA AGTGGTGGTG GAGATGGAGG TAGCGGGGGC TCGTGCTCAG TCAGGGCGTT CCACGGTGAT CACGGACTTT CAACATTCCA ATCGTCGTGT GCTGTTAGGT TAAATAGCTG CAGTGGAGAT GAACGGTTCA TGTCCAATAT ATCGTCACAA GATGTAATTA ACTCTCAGCC ACAACAGGCC GGCTCGTACC AGTCCCCCGG GACTTTGTCA ATTACCTACA GCGCCCATCC AAGTTATGGA ACTCAAAGTT TTTGCACTGG ATACAATCAC TATGCCCTAA ATCAGGACGT GGAATCGTCT GTGAGCTTTC CCCAGTGTGG CCCGTTAGTT TACTCTGGAA ATATTTCTTC CACTGTTGTG CAGCACCGTC ATCATCGTCA TGGTTACAGT AGCGGAAACG TTCACCTCCA TGGCCAGTTC CAGTACGGCT CAGCCACATA TGGTAATAGT TCGGATCAGG CAAACCTTAC GTTTGTGGCG GGCTGCTCAA ATCCGCTTTC CCCTCTGCAT GTGCCTCATC ATGATGCTTG TTGTTCACCT CTATCAGATG GCGTGCCCAC GGGACAGACA TTTGACTGGA TGAAGGTTAA ACGCAACCCG CCAAAAACAG GAAAAGCTGG GGAGTATGGA TTTGGTGGGC AGCCAAACAC TGTACGCACC AATTTTTCGA CAAAACAGCT GACAGAGCTT GAAAAGGAGT TTCATTTCAA TAAGTACTTG ACTCGCGCAA GGCGCGTGGA GATCGCGGCT TCTCTCCAAT TGAATGAGAC TCAGGTGAAG ATATGGTTTC AAAATCGCCG TATGAAACAA AAGAAGCGCG AAAAGGAAGG TCTTTTGCCG AAATCTTTGT CCGAACAGAA AGATGGTCTC GAAAAAACAG AGGATGCATC TGAAAAGTCG CCCTCTGCAC CATCCACGCC CTCTCCTTCA CCAACTGTTG AGGCATACTC CTCTAATTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa24070 |
Clone ID Related Accession (Same CDS sequence) |
XM_017352263.1
, XM_017352263.2
|
Accession Version |
XM_017352263.1 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 885bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-06-23 |
Organism |
Danio rerio(Zebrafish) |
Product |
homeobox protein Hox-A1a isoform X1 |
Comment |
MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 105
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGAGCACAT TCTTAGATTT TTCGTCCATA AGTGGTGGTG GAGATGGAGG TAGCGGGGGC TCGTGCTCAG TCAGGGCGTT CCACGGTGAT CACGGACTTT CAACATTCCA ATCGTCGTGT GCTGTTAGGT TAAATAGCTG CAGTGGAGAT GAACGGTTCA TGTCCAATAT ATCGTCACAA GATGTAATTA ACTCTCAGCC ACAACAGGCC GGCTCGTACC AGTCCCCCGG GACTTTGTCA ATTACCTACA GCGCCCATCC AAGTTATGGA ACTCAAAGTT TTTGCACTGG ATACAATCAC TATGCCCTAA ATCAGGACGT GGAATCGTCT GTGAGCTTTC CCCAGTGTGG CCCGTTAGTT TACTCTGGAA ATATTTCTTC CACTGTTGTG CAGCACCGTC ATCATCGTCA TGGTTACAGT AGCGGAAACG TTCACCTCCA TGGCCAGTTC CAGTACGGCT CAGCCACATA TGATGGCGTG CCCACGGGAC AGACATTTGA CTGGATGAAG GTTAAACGCA ACCCGCCAAA AACAGGAAAA GCTGGGGAGT ATGGATTTGG TGGGCAGCCA AACACTGTAC GCACCAATTT TTCGACAAAA CAGCTGACAG AGCTTGAAAA GGAGTTTCAT TTCAATAAGT ACTTGACTCG CGCAAGGCGC GTGGAGATCG CGGCTTCTCT CCAATTGAAT GAGACTCAGG TGAAGATATG GTTTCAAAAT CGCCGTATGA AACAAAAGAA GCGCGAAAAG GAAGGTCTTT TGCCGAAATC TTTGTCCGAA CAGAAAGATG GTCTCGAAAA AACAGAGGAT GCATCTGAAA AGTCGCCCTC TGCACCATCC ACGCCCTCTC CTTCACCAAC TGTTGAGGCA TACTCCTCTA ATTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_017207752.1 |
CDS | 1985..2869 |
Translation | |
Target ORF information:
RefSeq Version | XM_017352263.1 |
Organism | Danio rerio(Zebrafish) |
Definition | Danio rerio homeobox A1a (hoxa1a), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_017352263.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGAGCACAT TCTTAGATTT TTCGTCCATA AGTGGTGGTG GAGATGGAGG TAGCGGGGGC TCGTGCTCAG TCAGGGCGTT CCACGGTGAT CACGGACTTT CAACATTCCA ATCGTCGTGT GCTGTTAGGT TAAATAGCTG CAGTGGAGAT GAACGGTTCA TGTCCAATAT ATCGTCACAA GATGTAATTA ACTCTCAGCC ACAACAGGCC GGCTCGTACC AGTCCCCCGG GACTTTGTCA ATTACCTACA GCGCCCATCC AAGTTATGGA ACTCAAAGTT TTTGCACTGG ATACAATCAC TATGCCCTAA ATCAGGACGT GGAATCGTCT GTGAGCTTTC CCCAGTGTGG CCCGTTAGTT TACTCTGGAA ATATTTCTTC CACTGTTGTG CAGCACCGTC ATCATCGTCA TGGTTACAGT AGCGGAAACG TTCACCTCCA TGGCCAGTTC CAGTACGGCT CAGCCACATA TGATGGCGTG CCCACGGGAC AGACATTTGA CTGGATGAAG GTTAAACGCA ACCCGCCAAA AACAGGAAAA GCTGGGGAGT ATGGATTTGG TGGGCAGCCA AACACTGTAC GCACCAATTT TTCGACAAAA CAGCTGACAG AGCTTGAAAA GGAGTTTCAT TTCAATAAGT ACTTGACTCG CGCAAGGCGC GTGGAGATCG CGGCTTCTCT CCAATTGAAT GAGACTCAGG TGAAGATATG GTTTCAAAAT CGCCGTATGA AACAAAAGAA GCGCGAAAAG GAAGGTCTTT TGCCGAAATC TTTGTCCGAA CAGAAAGATG GTCTCGAAAA AACAGAGGAT GCATCTGAAA AGTCGCCCTC TGCACCATCC ACGCCCTCTC CTTCACCAAC TGTTGAGGCA TACTCCTCTA ATTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa24070 |
Clone ID Related Accession (Same CDS sequence) |
XM_017352263.1
, XM_017352263.2
|
Accession Version |
XM_017352263.2 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 885bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2017-06-14 |
Organism |
Danio rerio(zebrafish) |
Product |
homeobox protein Hox-A1a isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007130.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 15, 2017 this sequence version replaced XM_017352263.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGAGCACAT TCTTAGATTT TTCGTCCATA AGTGGTGGTG GAGATGGAGG TAGCGGGGGC TCGTGCTCAG TCAGGGCGTT CCACGGTGAT CACGGACTTT CAACATTCCA ATCGTCGTGT GCTGTTAGGT TAAATAGCTG CAGTGGAGAT GAACGGTTCA TGTCCAATAT ATCGTCACAA GATGTAATTA ACTCTCAGCC ACAACAGGCC GGCTCGTACC AGTCCCCCGG GACTTTGTCA ATTACCTACA GCGCCCATCC AAGTTATGGA ACTCAAAGTT TTTGCACTGG ATACAATCAC TATGCCCTAA ATCAGGACGT GGAATCGTCT GTGAGCTTTC CCCAGTGTGG CCCGTTAGTT TACTCTGGAA ATATTTCTTC CACTGTTGTG CAGCACCGTC ATCATCGTCA TGGTTACAGT AGCGGAAACG TTCACCTCCA TGGCCAGTTC CAGTACGGCT CAGCCACATA TGATGGCGTG CCCACGGGAC AGACATTTGA CTGGATGAAG GTTAAACGCA ACCCGCCAAA AACAGGAAAA GCTGGGGAGT ATGGATTTGG TGGGCAGCCA AACACTGTAC GCACCAATTT TTCGACAAAA CAGCTGACAG AGCTTGAAAA GGAGTTTCAT TTCAATAAGT ACTTGACTCG CGCAAGGCGC GTGGAGATCG CGGCTTCTCT CCAATTGAAT GAGACTCAGG TGAAGATATG GTTTCAAAAT CGCCGTATGA AACAAAAGAA GCGCGAAAAG GAAGGTCTTT TGCCGAAATC TTTGTCCGAA CAGAAAGATG GTCTCGAAAA AACAGAGGAT GCATCTGAAA AGTCGCCCTC TGCACCATCC ACGCCCTCTC CTTCACCAAC TGTTGAGGCA TACTCCTCTA ATTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_017207752.1 |
CDS | 2420..3304 |
Translation | |
Target ORF information:
RefSeq Version | XM_017352263.2 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio homeobox A1a (hoxa1a), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_017352263.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGAGCACAT TCTTAGATTT TTCGTCCATA AGTGGTGGTG GAGATGGAGG TAGCGGGGGC TCGTGCTCAG TCAGGGCGTT CCACGGTGAT CACGGACTTT CAACATTCCA ATCGTCGTGT GCTGTTAGGT TAAATAGCTG CAGTGGAGAT GAACGGTTCA TGTCCAATAT ATCGTCACAA GATGTAATTA ACTCTCAGCC ACAACAGGCC GGCTCGTACC AGTCCCCCGG GACTTTGTCA ATTACCTACA GCGCCCATCC AAGTTATGGA ACTCAAAGTT TTTGCACTGG ATACAATCAC TATGCCCTAA ATCAGGACGT GGAATCGTCT GTGAGCTTTC CCCAGTGTGG CCCGTTAGTT TACTCTGGAA ATATTTCTTC CACTGTTGTG CAGCACCGTC ATCATCGTCA TGGTTACAGT AGCGGAAACG TTCACCTCCA TGGCCAGTTC CAGTACGGCT CAGCCACATA TGATGGCGTG CCCACGGGAC AGACATTTGA CTGGATGAAG GTTAAACGCA ACCCGCCAAA AACAGGAAAA GCTGGGGAGT ATGGATTTGG TGGGCAGCCA AACACTGTAC GCACCAATTT TTCGACAAAA CAGCTGACAG AGCTTGAAAA GGAGTTTCAT TTCAATAAGT ACTTGACTCG CGCAAGGCGC GTGGAGATCG CGGCTTCTCT CCAATTGAAT GAGACTCAGG TGAAGATATG GTTTCAAAAT CGCCGTATGA AACAAAAGAA GCGCGAAAAG GAAGGTCTTT TGCCGAAATC TTTGTCCGAA CAGAAAGATG GTCTCGAAAA AACAGAGGAT GCATCTGAAA AGTCGCCCTC TGCACCATCC ACGCCCTCTC CTTCACCAAC TGTTGAGGCA TACTCCTCTA ATTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.