Gene Symbol | SRP54 |
Entrez Gene ID | 6729 |
Full Name | signal recognition particle 54 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
ORF » Species Summary » Homo sapiens » SRP54 cDNA ORF clone
gRNAs
Gene Symbol | SRP54 |
Entrez Gene ID | 6729 |
Full Name | signal recognition particle 54 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
mRNA | Protein | Name |
---|---|---|
XM_011537106.1 | XP_011535408.1 | signal recognition particle 54 kDa protein isoform X1 |
XM_005268024.3 | XP_005268081.1 | signal recognition particle 54 kDa protein isoform X2 |
NM_003136.3 | NP_003127.1 | signal recognition particle 54 kDa protein isoform 1 |
NM_003136.4 | NP_003127.1 | signal recognition particle 54 kDa protein isoform 1 |
XM_005268024.2 | XP_005268081.1 | signal recognition particle 54 kDa protein isoform X2 |
XM_017021615.2 | XP_016877104.1 | signal recognition particle 54 kDa protein isoform X3 |
XM_017021615.1 | XP_016877104.1 | signal recognition particle 54 kDa protein isoform X3 |
NM_001146282.1 | NP_001139754.1 | signal recognition particle 54 kDa protein isoform 2 |
Mus musculus (house mouse) | Srp54a | NP_036029.2 |
Danio rerio (zebrafish) | srp54 | NP_957282.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP004610 | XP_315212.2 |
Caenorhabditis elegans (roundworm) | F21D5.7 | NP_501507.1 |
Saccharomyces cerevisiae (baker's yeast) | SRP54 | NP_015413.1 |
Kluyveromyces lactis | KLLA0D09020g | XP_453464.1 |
Homo sapiens (human) | SRP54 | NP_003127.1 |
Rattus norvegicus (Norway rat) | Srp54a | NP_446323.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_05977 | XP_003711822.1 |
Arabidopsis thaliana (thale cress) | AT1G48900 | NP_564535.1 |
Canis lupus familiaris (dog) | SRP54 | NP_001003272.1 |
Bos taurus (cattle) | SRP54 | NP_001033290.1 |
Gallus gallus (chicken) | SRP54 | XP_421238.1 |
Schizosaccharomyces pombe (fission yeast) | srp54 | NP_588209.1 |
Neurospora crassa | NCU09696 | XP_960643.1 |
Oryza sativa (rice) | Os01g0772800 | NP_001044395.1 |
Pan troglodytes (chimpanzee) | SRP54 | XP_001136048.1 |
SRP54 | XP_001082531.1 | |
Mus musculus (house mouse) | Srp54b | NP_001093579.1 |
Drosophila melanogaster (fruit fly) | Srp54k | NP_523931.1 |
Eremothecium gossypii | AGOS_AAR041W | NP_982582.2 |
Xenopus tropicalis (tropical clawed frog) | srp54 | NP_988977.1 |
Mutations in signal recognition particle SRP54 cause syndromic neutropenia with Shwachman-Diamond-like features.
Carapito R, Konantz M, Paillard C, Miao Z, Pichot A, Leduc MS, Yang Y, Bergstrom KL, Mahoney DH, Shardy DL, Alsaleh G, Naegely L, Kolmer A, Paul N, Hanauer A, Rolli V, M?ller JS, Alghisi E, Sauteur L, Macquin C, Morlon A, Sancho CS, Amati-Bonneau P, Procaccio V, Mosca-Boidron AL, Marle N, Osmani N, Lefebvre O, Goetz JG, Unal S, Akarsu NA, Radosavljevic M, Chenard MP, Rialland F, Grain A, B?n? MC, Eveillard M, Vincent M, Guy J, Faivre L, Thauvin-Robinet C, Thevenon J, Myers K, Fleming MD, Shimamura A, Bottollier-Lemallaz E, Westhof E, Lengerke C, Isidor B, Bahram S
The Journal of clinical investigation127(11)4090-4103(2017 Nov)
Host factors that interact with the pestivirus N-terminal protease, Npro, are components of the ribonucleoprotein complex.
Jefferson M, Donaszi-Ivanov A, Pollen S, Dalmay T, Saalbach G, Powell PP
Journal of virology88(18)10340-53(2014 Sep)
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW
Cell149(6)1393-406(2012 Jun)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
autosomal dominant mutations in SRP54, a key member of the cotranslation protein-targeting pathway, lead to syndromic neutropenia with a Shwachman-Diamond-like phenotype.
Title: Mutations in signal recognition particle SRP54 cause syndromic neutropenia with Shwachman-Diamond-like features.
Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
crystal structure of a human SRP ternary complex consisting of SRP19, the M domain of SRP54 and the S domain of 7SL RNA
Title: Induced structural changes of 7SL RNA during the assembly of human signal recognition particle.
The following SRP54 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SRP54 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
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CloneID | OHu26455![]() |
|
Clone ID Related Accession (Same CDS sequence) | XM_011537106.1 , NM_003136.3 , NM_003136.4 | |
Accession Version | NM_003136.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1515bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-11-29 | |
Organism | Homo sapiens(human) | |
Product | signal recognition particle 54 kDa protein isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DA495064.1 and BC000652.2. On Apr 4, 2009 this sequence version replaced NM_003136.2. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR1803615.126494.1, SRR1803612.156525.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1965299, SAMEA1966682 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGTTCTAG CAGACCTTGG AAGAAAAATA ACATCAGCAT TACGCTCGTT GAGCAATGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_003127.1 |
CDS | 352..1866 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGTTCTAG CAGACCTTGG AAGAAAAATA ACATCAGCAT TACGCTCGTT GAGCAATGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu26455![]() |
|
Clone ID Related Accession (Same CDS sequence) | XM_011537106.1 , NM_003136.3 , NM_003136.4 | |
Accession Version | NM_003136.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1515bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-13 | |
Organism | Homo sapiens(human) | |
Product | signal recognition particle 54 kDa protein isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DA495064.1 and BC000652.2. On Nov 22, 2018 this sequence version replaced NM_003136.3. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR1803615.126494.1, SRR5189658.194175.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1965299, SAMEA1966682 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## MANE Ensembl match :: ENST00000216774.11/ ENSP00000216774.6 RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## COMPLETENESS: full length. |
1 | ATGGTTCTAG CAGACCTTGG AAGAAAAATA ACATCAGCAT TACGCTCGTT GAGCAATGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_003127.1 |
CDS | 258..1772 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGTTCTAG CAGACCTTGG AAGAAAAATA ACATCAGCAT TACGCTCGTT GAGCAATGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu26455![]() |
|
Clone ID Related Accession (Same CDS sequence) | XM_011537106.1 , NM_003136.3 , NM_003136.4 | |
Accession Version | XM_011537106.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1515bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-05 | |
Organism | Homo sapiens(human) | |
Product | signal recognition particle 54 kDa protein isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000014.9) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Homo sapiens Updated Annotation Release 109.20191205 Annotation Version :: 109.20191205 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTTCTAG CAGACCTTGG AAGAAAAATA ACATCAGCAT TACGCTCGTT GAGCAATGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011535408.1 |
CDS | 233..1747 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGTTCTAG CAGACCTTGG AAGAAAAATA ACATCAGCAT TACGCTCGTT GAGCAATGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu60733 | |
Clone ID Related Accession (Same CDS sequence) | XM_017021615.2 , XM_017021615.1 | |
Accession Version | XM_017021615.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1203bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-05 | |
Organism | Homo sapiens(human) | |
Product | signal recognition particle 54 kDa protein isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000014.9) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 26, 2018 this sequence version replaced XM_017021615.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Homo sapiens Updated Annotation Release 109.20191205 Annotation Version :: 109.20191205 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTTGTTG GATTGCAAGG GAGTGGTAAA ACAACAACAT GTTCAAAGCT AGCATATTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016877104.1 |
CDS | 485..1687 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTTGTTG GATTGCAAGG GAGTGGTAAA ACAACAACAT GTTCAAAGCT AGCATATTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu60733 | |
Clone ID Related Accession (Same CDS sequence) | XM_017021615.2 , XM_017021615.1 | |
Accession Version | XM_017021615.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1203bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-05 | |
Organism | Homo sapiens(human) | |
Product | signal recognition particle 54 kDa protein isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000014.9) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTTGTTG GATTGCAAGG GAGTGGTAAA ACAACAACAT GTTCAAAGCT AGCATATTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016877104.1 |
CDS | 504..1706 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTTTGTTG GATTGCAAGG GAGTGGTAAA ACAACAACAT GTTCAAAGCT AGCATATTAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu26546 | |
Clone ID Related Accession (Same CDS sequence) | NM_001146282.1 | |
Accession Version | NM_001146282.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1368bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-13 | |
Organism | Homo sapiens(human) | |
Product | signal recognition particle 54 kDa protein isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DA495064.1, AK300824.1 and BC000652.2. Transcript Variant: This variant (2) lacks a portion of the 5' coding region and uses a distinct translational start codon, compared to variant 1. The resulting isoform (2) has a distinct N-terminus and is shorter than isoform 1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR1803615.158649.1, SRR1803617.230082.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968540, SAMEA1968968 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCCACCAT TATCAATGAA GAGGTCTGCT ATTGATCTTG AAGAGATGGC ATCTGGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001139754.1 |
CDS | 407..1774 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCACCAT TATCAATGAA GAGGTCTGCT ATTGATCTTG AAGAGATGGC ATCTGGTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu47874 | |
Clone ID Related Accession (Same CDS sequence) | XM_005268024.3 , XM_005268024.2 | |
Accession Version | XM_005268024.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1344bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-05 | |
Organism | Homo sapiens(human) | |
Product | signal recognition particle 54 kDa protein isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000014.9) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 26, 2018 this sequence version replaced XM_005268024.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Homo sapiens Updated Annotation Release 109.20191205 Annotation Version :: 109.20191205 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTTCTAG CAGACCTTGG AAGAAAAATA ACATCAGCAT TACGCTCGTT GAGCAATGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005268081.1 |
CDS | 269..1612 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGTTCTAG CAGACCTTGG AAGAAAAATA ACATCAGCAT TACGCTCGTT GAGCAATGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu47874 | |
Clone ID Related Accession (Same CDS sequence) | XM_005268024.3 , XM_005268024.2 | |
Accession Version | XM_005268024.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1344bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-05 | |
Organism | Homo sapiens(human) | |
Product | signal recognition particle 54 kDa protein isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000014.9) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 6, 2016 this sequence version replaced XM_005268024.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTTCTAG CAGACCTTGG AAGAAAAATA ACATCAGCAT TACGCTCGTT GAGCAATGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005268081.1 |
CDS | 605..1948 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGTTCTAG CAGACCTTGG AAGAAAAATA ACATCAGCAT TACGCTCGTT GAGCAATGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Mutations in signal recognition particle SRP54 cause syndromic neutropenia with Shwachman-Diamond-like features. |
Host factors that interact with the pestivirus N-terminal protease, Npro, are components of the ribonucleoprotein complex. |
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. |