Gene Symbol | FAM71F1 |
Entrez Gene ID | 84691 |
Full Name | family with sequence similarity 71 member F1 |
Synonyms | FAM137A,NYD-SP18 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome |
ORF » Species Summary » Homo sapiens » FAM71F1 cDNA ORF clone
gRNAs
Gene Symbol | FAM71F1 |
Entrez Gene ID | 84691 |
Full Name | family with sequence similarity 71 member F1 |
Synonyms | FAM137A,NYD-SP18 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_017012743.1 | XP_016868232.1 | protein FAM71F1 isoform X1 |
NM_001282788.1 | NP_001269717.1 | protein FAM71F1 isoform 2 |
NM_001282789.2 | NP_001269718.1 | protein FAM71F1 isoform 3 |
XM_017012743.2 | XP_016868232.1 | protein FAM71F1 isoform X1 |
NM_001282789.1 | NP_001269718.1 | protein FAM71F1 isoform 3 |
NM_001282788.2 | NP_001269717.1 | protein FAM71F1 isoform 2 |
NM_032599.3 | NP_115988.1 | protein FAM71F1 isoform 1 |
NM_032599.4 | NP_115988.1 | protein FAM71F1 isoform 1 |
Homo sapiens (human) | FAM71F1 | NP_115988.1 |
Bos taurus (cattle) | FAM71F1 | NP_001039922.1 |
Canis lupus familiaris (dog) | FAM71F1 | XP_532434.2 |
Rattus norvegicus (Norway rat) | Fam71f1 | NP_001019495.1 |
FAM71F1 | XP_001090914.1 | |
Pan troglodytes (chimpanzee) | FAM71F1 | XP_001152894.2 |
Mus musculus (house mouse) | Fam71f1 | NP_997141.2 |
Lack of Association between NYD-SP18 Variant and Obesity. The Health Alcohol and Psychosocial Factors in Eastern Europe Study.
Hubacek JA, Pikhart H, Kubinova R, Peasey A, Malyutina S, Pajak A, Tamosiunas A, Bobak M
Annals of nutrition & metabolism68(4)244-8(2016)
Body Composition Changes in Adult Females after Lifestyle Intervention Are Influenced by the NYD-SP18 Variant.
Such?nek P, L?nsk? V, Hub??ek JA
Central European journal of public health23 SupplS19-22(2015 Nov)
Strong gender-specific additive effects of the NYD-SP18 and FTO variants on BMI values.
Hubacek JA, Dlouha D, Lanska V, Adamkova V
Physiological research64 Suppl 3S419-26(2015)
NYD-SP18 is associated with obesity in the NHLBI Family Heart Study.
Wilk JB, Laramie JM, Latourelle JC, Williamson S, Nagle MW, Tobin JE, Foster CL, Eckfeldt JH, Province MA, Borecki IB, Myers RH
International journal of obesity (2005)32(6)930-5(2008 Jun)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
genetic association studies in populations in Eastern Europe (Czech Republic, Lithuania, Poland, and Russia): Data suggest that an SNP in NYD-SP18 (rs6971091) is not associated with overweight/obesity in the adult populations studied (aged 45-75).
Title: Lack of Association between NYD-SP18 Variant and Obesity. The Health Alcohol and Psychosocial Factors in Eastern Europe Study.
Overweight/obese female carriers of the NYD-SP18 rs6971091 GG genotype exhibited a more beneficial response to the intensive lifestyle intervention than others.
Title: Body Composition Changes in Adult Females after Lifestyle Intervention Are Influenced by the NYD-SP18 Variant.
Genetic variants within NYD-SP18 genes revealed a significant additive effect on BMI values in males.
Title: Strong gender-specific additive effects of the NYD-SP18 and FTO variants on BMI values.
Observational study of gene-disease association. (HuGE Navigator)
Title: NYD-SP18 is associated with obesity in the NHLBI Family Heart Study.
The following FAM71F1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the FAM71F1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
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CloneID | OHu00543![]() |
|
Clone ID Related Accession (Same CDS sequence) | NM_001282788.1 , NM_001282788.2 | |
Accession Version | NM_001282788.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1029bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-01-05 | |
Organism | Homo sapiens(human) | |
Product | protein FAM71F1 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from HY051242.1, BC037248.1 and BC032842.1. On Sep 19, 2013 this sequence version replaced XM_005250646.1. Transcript Variant: This variant (2) uses an alternate in-frame acceptor splice site in the 3' coding region compared to variant 1. The resulting isoform (2) is 2 aa shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: BC037248.1, AK313608.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968968, SAMEA2148093 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001269717.1 |
CDS | 101..1129 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu00543![]() |
|
Clone ID Related Accession (Same CDS sequence) | NM_001282788.1 , NM_001282788.2 | |
Accession Version | NM_001282788.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1029bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-28 | |
Organism | Homo sapiens(human) | |
Product | protein FAM71F1 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from HY051242.1, BC037248.1 and BC032842.1. On Jun 2, 2019 this sequence version replaced NM_001282788.1. Transcript Variant: This variant (2) uses an alternate in-frame acceptor splice site in the 3' coding region compared to variant 1. The resulting isoform (2) is 2 aa shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK313608.1, BC037248.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968968, SAMEA2148093 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001269717.1 |
CDS | 52..1080 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu00655 | |
Clone ID Related Accession (Same CDS sequence) | NM_001282789.2 , NM_001282789.1 | |
Accession Version | NM_001282789.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 732bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-06-01 | |
Organism | Homo sapiens(human) | |
Product | protein FAM71F1 isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK302221.1, AK093161.1 and BC032842.1. On Jun 2, 2019 this sequence version replaced NM_001282789.1. Transcript Variant: This variant (3) contains 2 alternate exons at the 5' end and uses 2 alternate in-frame acceptor splice sites compared to variant 1. The former difference results in translation initiation from an upstream start codon and a shorter isoform (3) with a distinct N-terminus compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK093161.1, SRR1163658.103709.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968968, SAMEA2148093 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGAATTGG ATGGTCAAAA GGGGCAGGAA TTGGAGAGAC GTCTACAAAG CTTCCAACAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001269718.1 |
CDS | 345..1076 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGAATTGG ATGGTCAAAA GGGGCAGGAA TTGGAGAGAC GTCTACAAAG CTTCCAACAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu00655 | |
Clone ID Related Accession (Same CDS sequence) | NM_001282789.2 , NM_001282789.1 | |
Accession Version | NM_001282789.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 732bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-01-05 | |
Organism | Homo sapiens(human) | |
Product | protein FAM71F1 isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK302221.1, AK093161.1 and BC032842.1. On Sep 19, 2013 this sequence version replaced XM_005250651.1. Transcript Variant: This variant (3) contains 2 alternate exons at the 5' end and uses 2 alternate in-frame acceptor splice sites compared to variant 1. The former difference results in translation initiation from an upstream start codon and a shorter isoform (3) with a distinct N-terminus compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK093161.1, SRR1163658.103709.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968968, SAMEA2148093 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGAATTGG ATGGTCAAAA GGGGCAGGAA TTGGAGAGAC GTCTACAAAG CTTCCAACAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001269718.1 |
CDS | 345..1076 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGAATTGG ATGGTCAAAA GGGGCAGGAA TTGGAGAGAC GTCTACAAAG CTTCCAACAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu00676 | |
Clone ID Related Accession (Same CDS sequence) | NM_032599.3 , NM_032599.4 | |
Accession Version | NM_032599.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1035bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-01-05 | |
Organism | Homo sapiens(human) | |
Product | protein FAM71F1 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from HY051242.1, AF367470.1 and BC032842.1. On Sep 19, 2013 this sequence version replaced NM_032599.2. Transcript Variant: This variant (1) encodes the longest isoform (1). ##Evidence-Data-START## Transcript exon combination :: AF367470.1, HM005380.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968968, SAMEA2148093 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_115988.1 |
CDS | 101..1135 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu00676 | |
Clone ID Related Accession (Same CDS sequence) | NM_032599.3 , NM_032599.4 | |
Accession Version | NM_032599.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1035bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-06-01 | |
Organism | Homo sapiens(human) | |
Product | protein FAM71F1 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from HY051242.1, AF367470.1 and BC032842.1. On Jun 2, 2019 this sequence version replaced NM_032599.3. Transcript Variant: This variant (1) encodes the longest isoform (1). ##Evidence-Data-START## Transcript exon combination :: AF367470.1, HM005380.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968968, SAMEA2148093 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_115988.1 |
CDS | 52..1086 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu97573 | |
Clone ID Related Accession (Same CDS sequence) | XM_017012743.1 , XM_017012743.2 | |
Accession Version | XM_017012743.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 858bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-05 | |
Organism | Homo sapiens(human) | |
Product | protein FAM71F1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000007.14) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016868232.1 |
CDS | 144..1001 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu97573 | |
Clone ID Related Accession (Same CDS sequence) | XM_017012743.1 , XM_017012743.2 | |
Accession Version | XM_017012743.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 858bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-05 | |
Organism | Homo sapiens(human) | |
Product | protein FAM71F1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000007.14) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 26, 2018 this sequence version replaced XM_017012743.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Homo sapiens Updated Annotation Release 109.20191205 Annotation Version :: 109.20191205 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_016868232.1 |
CDS | 52..909 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTGTCAT CATTTCCACA TAGAAAGACT TGGAGGAAAT CAAAGAAGAC AGTAAAAGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Lack of Association between NYD-SP18 Variant and Obesity. The Health Alcohol and Psychosocial Factors in Eastern Europe Study. |
Body Composition Changes in Adult Females after Lifestyle Intervention Are Influenced by the NYD-SP18 Variant. |
Strong gender-specific additive effects of the NYD-SP18 and FTO variants on BMI values. |
NYD-SP18 is associated with obesity in the NHLBI Family Heart Study. |