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Hoxa1 cDNA ORF clone, Mus musculus(house mouse)

Summary

Gene Symbol Hoxa1
Entrez Gene ID 15394
Full Name homeobox A1
Synonyms ERA1,Hox-1.6
General protein information
Preferred Names

homeobox A1

Names

homeobox protein Hox-A1
early retinoic acid 1
homeobox protein Hox-1.6
homeoboxless protein ERA-1-399
homeotic protein ERA-1-993
Gene Type protein-coding
Organism Mus musculus(house mouse)
Genome

6

6 B3|6 25.4 cM

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_006505607.3 XP_006505670.1 homeobox protein Hox-A1 isoform X1
NM_010449.4 NP_034579.3 homeobox protein Hox-A1 isoform 1
XM_006505607.2 XP_006505670.1 homeobox protein Hox-A1 isoform X1
NM_001311118.1 NP_001298047.1 homeobox protein Hox-A1 isoform 2

Pathways from BioSystems


Homologies


Pan troglodytes (chimpanzee) HOXA1 XP_519009.1
Mus musculus (house mouse) Hoxa1 NP_034579.3
Gallus gallus (chicken) HOXA1 XP_003640745.1
Homo sapiens (human) HOXA1 NP_005513.1
HOXA1 XP_001093148.1
Rattus norvegicus (Norway rat) LOC100911406 XP_003752224.1
Xenopus tropicalis (tropical clawed frog) hoxa1 NP_001008017.1
Bos taurus (cattle) HOXA1 NP_001193040.1
Canis lupus familiaris (dog) HOXA1 XP_005628713.1
Rattus norvegicus (Norway rat) Hoxa1 NP_037207.1
Danio rerio (zebrafish) hoxa1a NP_571611.1

Gene Ontology


Bibliography

Related articles in PubMed

Hoxa1 targets signaling pathways during neural differentiation of ES cells and mouse embryogenesis.
De Kumar B, Parker HJ, Paulson A, Parrish ME, Zeitlinger J, Krumlauf R
Developmental biology432(1)151-164(2017 Dec)

HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets.
De Kumar B, Parker HJ, Paulson A, Parrish ME, Pushel I, Singh NP, Zhang Y, Slaughter BD, Unruh JR, Florens L, Zeitlinger J, Krumlauf R
Genome research27(9)1501-1512(2017 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Authors found evidence for a high degree of evolutionary conservation of many binding regions and downstream targets of Hoxa1 between mouse and zebrafish.
Title: Hoxa1 targets signaling pathways during neural differentiation of ES cells and mouse embryogenesis.

Data indicate that homeobox A1 (HOXA1) was a direct microRNA miR-30b target in esophageal cancer (EC) cells.
Title: miR-30b inhibits cancer cell growth, migration, and invasion by targeting homeobox A1 in esophageal cancer.

Hoxa1 and Hoxb1 are required for pharyngeal arch artery development.
Title: Hoxa1 and Hoxb1 are required for pharyngeal arch artery development.

In presence of these inducing agents, lipid accumulation as well as expression of HoxA1, HoxA5, HoxC4 &HoxC8 markedly enhanced. Irrespective of presence or absence of T3, insulin down regulates HoxA10. T3 results in over expression of HoxA5, HoxC4 and HoxC8 genes, whereas insulin up regulates expression of only HoxC8
Title: Fat accumulation in differentiated brown adipocytes is linked with expression of Hox genes.

These data suggest that Hoxb1 and Hoxa1 are more phenotypically divergent than previously reported and support that sub- and/or neofunctionalization has occurred in these paralogous genes leading to a divergence of gene function and incomplete redundancy
Title: Fitness Assays Reveal Incomplete Functional Redundancy of the HoxA1 and HoxB1 Paralogs of Mice.

The following Hoxa1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Hoxa1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OMu67961 NM_001311118.1
Latest version!		 Mus musculus homeobox A1 (Hoxa1), transcript variant 2, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $69.30
$99.00
OMu13066 XM_006505607.3
Latest version!		 Mus musculus homeobox A1 (Hoxa1), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 9-11 $223.30
$319.00
OMu13066 NM_010449.4
Latest version!		 Mus musculus homeobox A1 (Hoxa1), transcript variant 1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $188.30
$269.00
View Old Accession Versions >>
OMu13066 XM_006505607.2 Mus musculus homeobox A1 (Hoxa1), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $188.30
$269.00
Hide Old Accession Versions >>

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID OMu67961
Clone ID Related Accession (Same CDS sequence) NM_001311118.1
Accession Version NM_001311118.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 417bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2019-09-21
Organism Mus musculus(house mouse)
Product homeobox protein Hox-A1 isoform 2
Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK083575.1 and AK143943.1. On Jul 24, 2015 this sequence version replaced XM_006505608.1. Transcript Variant: This variant (2) uses alternate splice sites in the 5' coding region, resulting in a frameshift and an early stop codon, compared to variant 1. It encodes isoform 2, which has a shorter and distinct C-terminus, compared to isoform 1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AK143943.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849375, SAMN00849381 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. 

1
61
121
181
241
301
361
ATGGACAATG CAAGAATGAA CTCCTTTCTG GAATACCCCA TCCTTGGCAG TGGCGACTCT 
GGGACCTGCT CGGCGCGAGC TTACCCCTCT GACCATGGGA TTACAACTTT CCAATCCTGC 
GCGGTCAGTG CCAACAGCTG CGGCGGCGAC GACCGCTTCC TAGTGGGCAG GGGGGTGCAG 
ATCAGCTCGC CCCACCACCA CCACCACCAC CACCACCATC ACCACCCCCA GACGGCTACT 
TACCAGACTT CTGGAAACCT TGGGATTTCT TATTCCCACT CGAGTTGTGG TCCAAGCTAT 
GGCGCGCAGA ACTTCAGTGC GCCTTATGGC CCCTATGGAT TAAATCAGGA AGCAGACCCA 
CCAAGAAGCC TGTCGTTCCC CTGCTTCAGA GACGTCTTCT CCAGCGCAGA CCTTTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001298047.1
CDS97..513
Translation

Target ORF information:

RefSeq Version NM_001311118.1
Organism Mus musculus(house mouse)
Definition Mus musculus homeobox A1 (Hoxa1), transcript variant 2, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001311118.1

ORF Insert Sequence:

1
61
121
181
241
301
361
ATGGACAATG CAAGAATGAA CTCCTTTCTG GAATACCCCA TCCTTGGCAG TGGCGACTCT 
GGGACCTGCT CGGCGCGAGC TTACCCCTCT GACCATGGGA TTACAACTTT CCAATCCTGC 
GCGGTCAGTG CCAACAGCTG CGGCGGCGAC GACCGCTTCC TAGTGGGCAG GGGGGTGCAG 
ATCAGCTCGC CCCACCACCA CCACCACCAC CACCACCATC ACCACCCCCA GACGGCTACT 
TACCAGACTT CTGGAAACCT TGGGATTTCT TATTCCCACT CGAGTTGTGG TCCAAGCTAT 
GGCGCGCAGA ACTTCAGTGC GCCTTATGGC CCCTATGGAT TAAATCAGGA AGCAGACCCA 
CCAAGAAGCC TGTCGTTCCC CTGCTTCAGA GACGTCTTCT CCAGCGCAGA CCTTTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OMu13066
Clone ID Related Accession (Same CDS sequence) XM_006505607.3 , NM_010449.4 , XM_006505607.2
Accession Version XM_006505607.3 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1011bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2019-08-07
Organism Mus musculus(house mouse)
Product homeobox protein Hox-A1 isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006505607.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGACAATG CAAGAATGAA CTCCTTTCTG GAATACCCCA TCCTTGGCAG TGGCGACTCT 
GGGACCTGCT CGGCGCGAGC TTACCCCTCT GACCATGGGA TTACAACTTT CCAATCCTGC 
GCGGTCAGTG CCAACAGCTG CGGCGGCGAC GACCGCTTCC TAGTGGGCAG GGGGGTGCAG 
ATCAGCTCGC CCCACCACCA CCACCACCAC CACCACCATC ACCACCCCCA GACGGCTACT 
TACCAGACTT CTGGAAACCT TGGGATTTCT TATTCCCACT CGAGTTGTGG TCCAAGCTAT 
GGCGCGCAGA ACTTCAGTGC GCCTTATGGC CCCTATGGAT TAAATCAGGA AGCAGACGTA 
AGTGGTGGGT ACCCCCCGTG CGCTCCCGCT GTTTACTCTG GAAACCTCTC GACTCCCATG 
GTCCAGCATC ACCACCACCA CCAGGGTTAT GCTGGGGGCA CAGTGGGCTC GCCCCAGTAC 
ATTCACCACT CATATGGACA AGAGCAGCAG ACTCTGGCCC TGGCCACGTA TAATAACTCC 
TTATCCCCTC TCCACGCCAG CCACCAAGAA GCCTGTCGTT CCCCTGCTTC AGAGACGTCT 
TCTCCAGCGC AGACCTTTGA CTGGATGAAA GTTAAAAGAA ACCCTCCCAA AACAGGGAAA 
GTTGGAGAGT ACGGCTACGT GGGTCAACCC AACGCAGTGC GCACCAATTT CACCACCAAG 
CAGCTCACAG AGCTGGAGAA GGAGTTCCAC TTCAACAAGT ACCTTACACG AGCGCGCAGG 
GTGGAGATTG CCGCGTCCCT ACAGCTCAAT GAGACCCAGG TGAAGATCTG GTTCCAGAAT 
CGCCGCATGA AGCAGAAGAA GCGTGAGAAG GAGGGGCTCC TGCCCATCTC CCCTGCCACT 
CCTCCTGGCA GCGATGAGAA AACGGAAGAA TCATCTGAGA AATCTAGCCC CTCGCCCAGT 
GCCCCTTCTC CGGCATCGTC TACCTCAGAC ACTCTGACTA CCTCCCACTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_006505670.1
CDS922..1932
Translation

Target ORF information:

RefSeq Version XM_006505607.3
Organism Mus musculus(house mouse)
Definition Mus musculus homeobox A1 (Hoxa1), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_006505607.3

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGACAATG CAAGAATGAA CTCCTTTCTG GAATACCCCA TCCTTGGCAG TGGCGACTCT 
GGGACCTGCT CGGCGCGAGC TTACCCCTCT GACCATGGGA TTACAACTTT CCAATCCTGC 
GCGGTCAGTG CCAACAGCTG CGGCGGCGAC GACCGCTTCC TAGTGGGCAG GGGGGTGCAG 
ATCAGCTCGC CCCACCACCA CCACCACCAC CACCACCATC ACCACCCCCA GACGGCTACT 
TACCAGACTT CTGGAAACCT TGGGATTTCT TATTCCCACT CGAGTTGTGG TCCAAGCTAT 
GGCGCGCAGA ACTTCAGTGC GCCTTATGGC CCCTATGGAT TAAATCAGGA AGCAGACGTA 
AGTGGTGGGT ACCCCCCGTG CGCTCCCGCT GTTTACTCTG GAAACCTCTC GACTCCCATG 
GTCCAGCATC ACCACCACCA CCAGGGTTAT GCTGGGGGCA CAGTGGGCTC GCCCCAGTAC 
ATTCACCACT CATATGGACA AGAGCAGCAG ACTCTGGCCC TGGCCACGTA TAATAACTCC 
TTATCCCCTC TCCACGCCAG CCACCAAGAA GCCTGTCGTT CCCCTGCTTC AGAGACGTCT 
TCTCCAGCGC AGACCTTTGA CTGGATGAAA GTTAAAAGAA ACCCTCCCAA AACAGGGAAA 
GTTGGAGAGT ACGGCTACGT GGGTCAACCC AACGCAGTGC GCACCAATTT CACCACCAAG 
CAGCTCACAG AGCTGGAGAA GGAGTTCCAC TTCAACAAGT ACCTTACACG AGCGCGCAGG 
GTGGAGATTG CCGCGTCCCT ACAGCTCAAT GAGACCCAGG TGAAGATCTG GTTCCAGAAT 
CGCCGCATGA AGCAGAAGAA GCGTGAGAAG GAGGGGCTCC TGCCCATCTC CCCTGCCACT 
CCTCCTGGCA GCGATGAGAA AACGGAAGAA TCATCTGAGA AATCTAGCCC CTCGCCCAGT 
GCCCCTTCTC CGGCATCGTC TACCTCAGAC ACTCTGACTA CCTCCCACTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OMu13066
Clone ID Related Accession (Same CDS sequence) XM_006505607.3 , NM_010449.4 , XM_006505607.2
Accession Version NM_010449.4 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1011bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2019-09-20
Organism Mus musculus(house mouse)
Product homeobox protein Hox-A1 isoform 1
Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK083575.1 and AK143943.1. On Nov 16, 2007 this sequence version replaced NM_010449.3. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AK083575.1, M22115.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849375, SAMN00849381 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGACAATG CAAGAATGAA CTCCTTTCTG GAATACCCCA TCCTTGGCAG TGGCGACTCT 
GGGACCTGCT CGGCGCGAGC TTACCCCTCT GACCATGGGA TTACAACTTT CCAATCCTGC 
GCGGTCAGTG CCAACAGCTG CGGCGGCGAC GACCGCTTCC TAGTGGGCAG GGGGGTGCAG 
ATCAGCTCGC CCCACCACCA CCACCACCAC CACCACCATC ACCACCCCCA GACGGCTACT 
TACCAGACTT CTGGAAACCT TGGGATTTCT TATTCCCACT CGAGTTGTGG TCCAAGCTAT 
GGCGCGCAGA ACTTCAGTGC GCCTTATGGC CCCTATGGAT TAAATCAGGA AGCAGACGTA 
AGTGGTGGGT ACCCCCCGTG CGCTCCCGCT GTTTACTCTG GAAACCTCTC GACTCCCATG 
GTCCAGCATC ACCACCACCA CCAGGGTTAT GCTGGGGGCA CAGTGGGCTC GCCCCAGTAC 
ATTCACCACT CATATGGACA AGAGCAGCAG ACTCTGGCCC TGGCCACGTA TAATAACTCC 
TTATCCCCTC TCCACGCCAG CCACCAAGAA GCCTGTCGTT CCCCTGCTTC AGAGACGTCT 
TCTCCAGCGC AGACCTTTGA CTGGATGAAA GTTAAAAGAA ACCCTCCCAA AACAGGGAAA 
GTTGGAGAGT ACGGCTACGT GGGTCAACCC AACGCAGTGC GCACCAATTT CACCACCAAG 
CAGCTCACAG AGCTGGAGAA GGAGTTCCAC TTCAACAAGT ACCTTACACG AGCGCGCAGG 
GTGGAGATTG CCGCGTCCCT ACAGCTCAAT GAGACCCAGG TGAAGATCTG GTTCCAGAAT 
CGCCGCATGA AGCAGAAGAA GCGTGAGAAG GAGGGGCTCC TGCCCATCTC CCCTGCCACT 
CCTCCTGGCA GCGATGAGAA AACGGAAGAA TCATCTGAGA AATCTAGCCC CTCGCCCAGT 
GCCCCTTCTC CGGCATCGTC TACCTCAGAC ACTCTGACTA CCTCCCACTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_034579.3
CDS97..1107
Translation

Target ORF information:

RefSeq Version NM_010449.4
Organism Mus musculus(house mouse)
Definition Mus musculus homeobox A1 (Hoxa1), transcript variant 1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_010449.4

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGACAATG CAAGAATGAA CTCCTTTCTG GAATACCCCA TCCTTGGCAG TGGCGACTCT 
GGGACCTGCT CGGCGCGAGC TTACCCCTCT GACCATGGGA TTACAACTTT CCAATCCTGC 
GCGGTCAGTG CCAACAGCTG CGGCGGCGAC GACCGCTTCC TAGTGGGCAG GGGGGTGCAG 
ATCAGCTCGC CCCACCACCA CCACCACCAC CACCACCATC ACCACCCCCA GACGGCTACT 
TACCAGACTT CTGGAAACCT TGGGATTTCT TATTCCCACT CGAGTTGTGG TCCAAGCTAT 
GGCGCGCAGA ACTTCAGTGC GCCTTATGGC CCCTATGGAT TAAATCAGGA AGCAGACGTA 
AGTGGTGGGT ACCCCCCGTG CGCTCCCGCT GTTTACTCTG GAAACCTCTC GACTCCCATG 
GTCCAGCATC ACCACCACCA CCAGGGTTAT GCTGGGGGCA CAGTGGGCTC GCCCCAGTAC 
ATTCACCACT CATATGGACA AGAGCAGCAG ACTCTGGCCC TGGCCACGTA TAATAACTCC 
TTATCCCCTC TCCACGCCAG CCACCAAGAA GCCTGTCGTT CCCCTGCTTC AGAGACGTCT 
TCTCCAGCGC AGACCTTTGA CTGGATGAAA GTTAAAAGAA ACCCTCCCAA AACAGGGAAA 
GTTGGAGAGT ACGGCTACGT GGGTCAACCC AACGCAGTGC GCACCAATTT CACCACCAAG 
CAGCTCACAG AGCTGGAGAA GGAGTTCCAC TTCAACAAGT ACCTTACACG AGCGCGCAGG 
GTGGAGATTG CCGCGTCCCT ACAGCTCAAT GAGACCCAGG TGAAGATCTG GTTCCAGAAT 
CGCCGCATGA AGCAGAAGAA GCGTGAGAAG GAGGGGCTCC TGCCCATCTC CCCTGCCACT 
CCTCCTGGCA GCGATGAGAA AACGGAAGAA TCATCTGAGA AATCTAGCCC CTCGCCCAGT 
GCCCCTTCTC CGGCATCGTC TACCTCAGAC ACTCTGACTA CCTCCCACTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OMu13066
Clone ID Related Accession (Same CDS sequence) XM_006505607.3 , NM_010449.4 , XM_006505607.2
Accession Version XM_006505607.2 Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1011bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-06-21
Organism Mus musculus(house mouse)
Product homeobox protein Hox-A1 isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006505607.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGACAATG CAAGAATGAA CTCCTTTCTG GAATACCCCA TCCTTGGCAG TGGCGACTCT 
GGGACCTGCT CGGCGCGAGC TTACCCCTCT GACCATGGGA TTACAACTTT CCAATCCTGC 
GCGGTCAGTG CCAACAGCTG CGGCGGCGAC GACCGCTTCC TAGTGGGCAG GGGGGTGCAG 
ATCAGCTCGC CCCACCACCA CCACCACCAC CACCACCATC ACCACCCCCA GACGGCTACT 
TACCAGACTT CTGGAAACCT TGGGATTTCT TATTCCCACT CGAGTTGTGG TCCAAGCTAT 
GGCGCGCAGA ACTTCAGTGC GCCTTATGGC CCCTATGGAT TAAATCAGGA AGCAGACGTA 
AGTGGTGGGT ACCCCCCGTG CGCTCCCGCT GTTTACTCTG GAAACCTCTC GACTCCCATG 
GTCCAGCATC ACCACCACCA CCAGGGTTAT GCTGGGGGCA CAGTGGGCTC GCCCCAGTAC 
ATTCACCACT CATATGGACA AGAGCAGCAG ACTCTGGCCC TGGCCACGTA TAATAACTCC 
TTATCCCCTC TCCACGCCAG CCACCAAGAA GCCTGTCGTT CCCCTGCTTC AGAGACGTCT 
TCTCCAGCGC AGACCTTTGA CTGGATGAAA GTTAAAAGAA ACCCTCCCAA AACAGGGAAA 
GTTGGAGAGT ACGGCTACGT GGGTCAACCC AACGCAGTGC GCACCAATTT CACCACCAAG 
CAGCTCACAG AGCTGGAGAA GGAGTTCCAC TTCAACAAGT ACCTTACACG AGCGCGCAGG 
GTGGAGATTG CCGCGTCCCT ACAGCTCAAT GAGACCCAGG TGAAGATCTG GTTCCAGAAT 
CGCCGCATGA AGCAGAAGAA GCGTGAGAAG GAGGGGCTCC TGCCCATCTC CCCTGCCACT 
CCTCCTGGCA GCGATGAGAA AACGGAAGAA TCATCTGAGA AATCTAGCCC CTCGCCCAGT 
GCCCCTTCTC CGGCATCGTC TACCTCAGAC ACTCTGACTA CCTCCCACTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_006505670.1
CDS201..1211
Translation

Target ORF information:

RefSeq Version XM_006505607.2
Organism Mus musculus(house mouse)
Definition Mus musculus homeobox A1 (Hoxa1), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_006505607.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGACAATG CAAGAATGAA CTCCTTTCTG GAATACCCCA TCCTTGGCAG TGGCGACTCT 
GGGACCTGCT CGGCGCGAGC TTACCCCTCT GACCATGGGA TTACAACTTT CCAATCCTGC 
GCGGTCAGTG CCAACAGCTG CGGCGGCGAC GACCGCTTCC TAGTGGGCAG GGGGGTGCAG 
ATCAGCTCGC CCCACCACCA CCACCACCAC CACCACCATC ACCACCCCCA GACGGCTACT 
TACCAGACTT CTGGAAACCT TGGGATTTCT TATTCCCACT CGAGTTGTGG TCCAAGCTAT 
GGCGCGCAGA ACTTCAGTGC GCCTTATGGC CCCTATGGAT TAAATCAGGA AGCAGACGTA 
AGTGGTGGGT ACCCCCCGTG CGCTCCCGCT GTTTACTCTG GAAACCTCTC GACTCCCATG 
GTCCAGCATC ACCACCACCA CCAGGGTTAT GCTGGGGGCA CAGTGGGCTC GCCCCAGTAC 
ATTCACCACT CATATGGACA AGAGCAGCAG ACTCTGGCCC TGGCCACGTA TAATAACTCC 
TTATCCCCTC TCCACGCCAG CCACCAAGAA GCCTGTCGTT CCCCTGCTTC AGAGACGTCT 
TCTCCAGCGC AGACCTTTGA CTGGATGAAA GTTAAAAGAA ACCCTCCCAA AACAGGGAAA 
GTTGGAGAGT ACGGCTACGT GGGTCAACCC AACGCAGTGC GCACCAATTT CACCACCAAG 
CAGCTCACAG AGCTGGAGAA GGAGTTCCAC TTCAACAAGT ACCTTACACG AGCGCGCAGG 
GTGGAGATTG CCGCGTCCCT ACAGCTCAAT GAGACCCAGG TGAAGATCTG GTTCCAGAAT 
CGCCGCATGA AGCAGAAGAA GCGTGAGAAG GAGGGGCTCC TGCCCATCTC CCCTGCCACT 
CCTCCTGGCA GCGATGAGAA AACGGAAGAA TCATCTGAGA AATCTAGCCC CTCGCCCAGT 
GCCCCTTCTC CGGCATCGTC TACCTCAGAC ACTCTGACTA CCTCCCACTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

Hoxa1 targets signaling pathways during neural differentiation of ES cells and mouse embryogenesis.
Developmental biology432(1)151-164(2017 Dec)
De Kumar B,Parker HJ,Paulson A,Parrish ME,Zeitlinger J,Krumlauf R


book

HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets.
Genome research27(9)1501-1512(2017 Sep)
De Kumar B,Parker HJ,Paulson A,Parrish ME,Pushel I,Singh NP,Zhang Y,Slaughter BD,Unruh JR,Florens L,Zeitlinger J,Krumlauf R