Gene Symbol | Foxj3 |
Entrez Gene ID | 230700 |
Full Name | forkhead box J3 |
Synonyms | C330039G02Rik,Fhd6 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Foxj3 cDNA ORF clone
Gene Symbol | Foxj3 |
Entrez Gene ID | 230700 |
Full Name | forkhead box J3 |
Synonyms | C330039G02Rik,Fhd6 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006503017.4 | XP_006503080.1 | forkhead box protein J3 isoform X1 |
NM_172699.3 | NP_766287.1 | forkhead box protein J3 isoform 1 |
NM_001290696.1 | NP_001277625.1 | forkhead box protein J3 isoform 2 |
XM_006503017.3 | XP_006503080.1 | forkhead box protein J3 isoform X1 |
XM_011240497.2 | XP_011238799.1 | forkhead box protein J3 isoform X2 |
XM_017320150.1 | XP_017175639.1 | forkhead box protein J3 isoform X1 |
NM_001357177.1 | NP_001344106.1 | forkhead box protein J3 isoform 1 |
Danio rerio (zebrafish) | foxj3 | XP_001922273.1 |
FOXJ3 | XP_001085670.2 | |
Canis lupus familiaris (dog) | FOXJ3 | XP_005628914.1 |
Pan troglodytes (chimpanzee) | FOXJ3 | XP_001172907.2 |
Rattus norvegicus (Norway rat) | Foxj3 | NP_001101441.1 |
Homo sapiens (human) | FOXJ3 | NP_055762.3 |
Bos taurus (cattle) | FOXJ3 | XP_005204974.1 |
Mus musculus (house mouse) | Foxj3 | NP_766287.1 |
Xenopus tropicalis (tropical clawed frog) | foxj3 | NP_001103516.1 |
Transcription and Signaling Regulators in Developing Neuronal Subtypes of Mouse and Human Enteric Nervous System.
Memic F, Knoflach V, Morarach K, Sadler R, Laranjeira C, Hjerling-Leffler J, Sundstr?m E, Pachnis V, Marklund U
Gastroenterology(2017 Oct)
Multiple roles of FOXJ3 in spermatogenesis: A lesson from Foxj3 conditional knockout mouse models.
Ni L, Xie H, Tan L
Molecular reproduction and development83(12)1060-1069(2016 Dec)
High-throughput discovery of novel developmental phenotypes.
Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK, Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L, Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A, Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ, Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA, Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR, Selloum M, Szoke-Kovacs Z, Tamura M, Trainor AG, Tudose I, Wakana S, Warren J, Wendling O, West DB, Wong L, Yoshiki A, , , , , , , , , MacArthur DG, Tocchini-Valentini GP, Gao X, Flicek P, Bradley A, Skarnes WC, Justice MJ, Parkinson HE, Moore M, Wells S, Braun RE, Svenson KL, de Angelis MH, Herault Y, Mohun T, Mallon AM, Henkelman RM, Brown SD, Adams DJ, Lloyd KC, McKerlie C, Beaudet AL, Bu?an M, Murray SA
Nature537(7621)508-514(2016 09)
A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain.
Thompson CL, Ng L, Menon V, Martinez S, Lee CK, Glattfelder K, Sunkin SM, Henry A, Lau C, Dang C, Garcia-Lopez R, Martinez-Ferre A, Pombero A, Rubenstein JLR, Wakeman WB, Hohmann J, Dee N, Sodt AJ, Young R, Smith K, Nguyen TN, Kidney J, Kuan L, Jeromin A, Kaykas A, Miller J, Page D, Orta G, Bernard A, Riley Z, Smith S, Wohnoutka P, Hawrylycz MJ, Puelles L, Jones AR
Neuron83(2)309-323(2014 Jul)
MicroRNA-494 regulates mitochondrial biogenesis in skeletal muscle through mitochondrial transcription factor A and Forkhead box j3.
Yamamoto H, Morino K, Nishio Y, Ugi S, Yoshizaki T, Kashiwagi A, Maegawa H
American journal of physiology. Endocrinology and metabolism303(12)E1419-27(2012 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
FOXJ3 is required for the survival of spermatogonia and participates in spermatocyte meiosis.
Title: Multiple roles of FOXJ3 in spermatogenesis: A lesson from Foxj3 conditional knockout mouse models.
Data suggest that microRNA 494 regulates mitochondrial biogenesis by down-regulating mtTFA (mitochondrial transcription factor A) and Foxj3 (forkhead box J3 protein) during myocyte differentiation and skeletal muscle adaptation to physical exercise.
Title: MicroRNA-494 regulates mitochondrial biogenesis in skeletal muscle through mitochondrial transcription factor A and Forkhead box j3.
Foxj3 is an important regulator of myofiber identity and muscle regeneration through the transcriptional activation of the Mef2c gene.
Title: Foxj3 transcriptionally activates Mef2c and regulates adult skeletal muscle fiber type identity.
Data show that developing limbs have a complex pattern of Foxj3 expression that at E12.5 colocalizes with the condensed mesenchyme of the skeletal primordia.
Title: FoxJ3, a novel mammalian forkhead gene expressed in neuroectoderm, neural crest, and myotome.
The following Foxj3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Foxj3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu14300 | |
Clone ID Related Accession (Same CDS sequence) | XM_006503017.4 , NM_172699.3 , XM_006503017.3 , XM_017320150.1 , NM_001357177.1 | |
Accession Version | NM_172699.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1872bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-27 | |
Organism | Mus musculus(house mouse) | |
Product | forkhead box protein J3 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK082840.1, AK139508.1, AK077346.1 and BP763140.1. On Mar 19, 2014 this sequence version replaced NM_172699.2. Transcript Variant: This variant (1) represents the longer isoform (1). Variants 1 and 2 encode the same isoform (1). Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC058231.1, AK139508.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_766287.1 |
CDS | 203..2074 |
Translation |
Target ORF information:
Target ORF information:
|
NM_172699.3 |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu14300 | |
Clone ID Related Accession (Same CDS sequence) | XM_006503017.4 , NM_172699.3 , XM_006503017.3 , XM_017320150.1 , NM_001357177.1 | |
Accession Version | NM_001357177.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1872bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-28 | |
Organism | Mus musculus(house mouse) | |
Product | forkhead box protein J3 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL645563.12, AK139508.1, AK082840.1, AK077346.1 and BP763140.1. On Oct 21, 2017 this sequence version replaced XM_017320150.1. Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1 and 3 encode the same isoform (1). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR1660815.43859.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849385, SAMN00849386 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001344106.1 |
CDS | 1072..2943 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001357177.1 |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu17429 | |
Clone ID Related Accession (Same CDS sequence) | NM_001290696.1 , XM_011240497.2 | |
Accession Version | NM_001290696.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1770bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-21 | |
Organism | Mus musculus(house mouse) | |
Product | forkhead box protein J3 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK082840.1, CJ048244.1, CB245622.1, AK077346.1 and BP763140.1. On Mar 19, 2014 this sequence version replaced XM_006503018.1. Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. It encodes isoform 2, which lacks an internal segment and is shorter, compared to isoform 1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AK129271.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001277625.1 |
CDS | 203..1972 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001290696.1 |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu14300 | |
Clone ID Related Accession (Same CDS sequence) | XM_006503017.4 , NM_172699.3 , XM_006503017.3 , XM_017320150.1 , NM_001357177.1 | |
Accession Version | XM_006503017.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1872bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | forkhead box protein J3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006503017.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006503080.1 |
CDS | 445..2316 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006503017.3 |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu14300 | |
Clone ID Related Accession (Same CDS sequence) | XM_006503017.4 , NM_172699.3 , XM_006503017.3 , XM_017320150.1 , NM_001357177.1 | |
Accession Version | XM_017320150.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1872bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(House mouse) | |
Product | forkhead box protein J3 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017175639.1 |
CDS | 1075..2946 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017320150.1 |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu17429 | |
Clone ID Related Accession (Same CDS sequence) | NM_001290696.1 , XM_011240497.2 | |
Accession Version | XM_011240497.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1770bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | forkhead box protein J3 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_011240497.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011238799.1 |
CDS | 1075..2844 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011240497.2 |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu14300 | |
Clone ID Related Accession (Same CDS sequence) | XM_006503017.4 , NM_172699.3 , XM_006503017.3 , XM_017320150.1 , NM_001357177.1 | |
Accession Version | XM_006503017.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1872bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | forkhead box protein J3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006503017.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006503080.1 |
CDS | 158..2029 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006503017.4 |
1 | ATGGGTTTGT ATGGACAAGC TTGTCCATCT GTAACTTCAT TAAGGATGAC ATCTGAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Transcription and Signaling Regulators in Developing Neuronal Subtypes of Mouse and Human Enteric Nervous System. |
Multiple roles of FOXJ3 in spermatogenesis: A lesson from Foxj3 conditional knockout mouse models. |
High-throughput discovery of novel developmental phenotypes. |
A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. |
MicroRNA-494 regulates mitochondrial biogenesis in skeletal muscle through mitochondrial transcription factor A and Forkhead box j3. |