Gene Symbol | Xkr5 |
Entrez Gene ID | 319581 |
Full Name | X-linked Kx blood group related 5 |
Synonyms | 5430438H03Rik,XRG5 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Xkr5 cDNA ORF clone
Gene Symbol | Xkr5 |
Entrez Gene ID | 319581 |
Full Name | X-linked Kx blood group related 5 |
Synonyms | 5430438H03Rik,XRG5 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006508817.2 | XP_006508880.1 | XK-related protein 5 isoform X1 |
NM_001113350.2 | NP_001106821.1 | XK-related protein 5 isoform a |
NM_176951.5 | NP_795925.1 | XK-related protein 5 isoform b |
NM_001286469.1 | NP_001273398.1 | XK-related protein 5 isoform c |
XM_006508817.3 | XP_006508880.1 | XK-related protein 5 isoform X1 |
XM_011242065.2 | XP_011240367.1 | XK-related protein 5 isoform X2 |
XM_011242065.3 | XP_011240367.1 | XK-related protein 5 isoform X2 |
XM_006508818.4 | XP_006508881.1 | XK-related protein 5 isoform X3 |
XM_006508818.3 | XP_006508881.1 | XK-related protein 5 isoform X3 |
Bos taurus (cattle) | XKR5 | XP_003587980.1 |
Rattus norvegicus (Norway rat) | Xkr5 | NP_001012228.1 |
LOC716883 | XP_001098341.2 | |
Mus musculus (house mouse) | Xkr5 | NP_001106821.1 |
Danio rerio (zebrafish) | LOC100000884 | XP_001340990.2 |
Danio rerio (zebrafish) | xrg5 | NP_001012260.1 |
Xenopus tropicalis (tropical clawed frog) | xkr5 | NP_001029114.1 |
Homo sapiens (human) | XKR5 | NP_997294.3 |
Pan troglodytes (chimpanzee) | XKR5 | NP_001028207.1 |
Canis lupus familiaris (dog) | XKR5 | XP_540057.3 |
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, Livstone MS, Lewis SE, Thomas PD
Briefings in bioinformatics12(5)449-62(2011 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Xkr5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Xkr5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu05770 | |
Clone ID Related Accession (Same CDS sequence) | XM_006508817.2 , NM_176951.5 , XM_006508817.3 | |
Accession Version | NM_176951.5 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1533bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | XK-related protein 5 isoform b | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AY534251.1 and AK045098.1. On Nov 6, 2013 this sequence version replaced NM_176951.4. Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. This encodes isoform b, which has a shorter N-terminus, compared to isoform a. ##Evidence-Data-START## Transcript exon combination :: AK030692.1, AK045098.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849383 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAAGCCAG GCCACCATAC CATGCTATGG GCTGCTCTCT TGTGCCAGCA GCTCTGGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_795925.1 |
CDS | 881..2413 |
Translation |
Target ORF information:
Target ORF information:
|
NM_176951.5 |
1 | ATGAAGCCAG GCCACCATAC CATGCTATGG GCTGCTCTCT TGTGCCAGCA GCTCTGGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu05770 | |
Clone ID Related Accession (Same CDS sequence) | XM_006508817.2 , NM_176951.5 , XM_006508817.3 | |
Accession Version | XM_006508817.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1533bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | XK-related protein 5 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000074.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced XM_006508817.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGCCAG GCCACCATAC CATGCTATGG GCTGCTCTCT TGTGCCAGCA GCTCTGGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006508880.1 |
CDS | 507..2039 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006508817.2 |
1 | ATGAAGCCAG GCCACCATAC CATGCTATGG GCTGCTCTCT TGTGCCAGCA GCTCTGGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu40418 | |
Clone ID Related Accession (Same CDS sequence) | XM_006508818.4 , XM_006508818.3 | |
Accession Version | XM_006508818.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 930bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | XK-related protein 5 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000074.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006508818.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCACGCGG GGCTCCTGGG GCTCTCTGCC CTGCTGCAGG CGGCCGAGCA AAGCGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006508881.1 |
CDS | 1433..2362 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006508818.3 |
1 | ATGCACGCGG GGCTCCTGGG GCTCTCTGCC CTGCTGCAGG CGGCCGAGCA AAGCGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu74543 | |
Clone ID Related Accession (Same CDS sequence) | XM_011242065.2 , XM_011242065.3 | |
Accession Version | XM_011242065.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 963bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | XK-related protein 5 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000074.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_011242065.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCACGCGG GGCTCCTGGG GCTCTCTGCC CTGCTGCAGG CGGCCGAGCA AAGCGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011240367.1 |
CDS | 1434..2396 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011242065.2 |
1 | ATGCACGCGG GGCTCCTGGG GCTCTCTGCC CTGCTGCAGG CGGCCGAGCA AAGCGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu40418 | |
Clone ID Related Accession (Same CDS sequence) | XM_006508818.4 , XM_006508818.3 | |
Accession Version | XM_006508818.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 930bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | XK-related protein 5 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000074.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006508818.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCACGCGG GGCTCCTGGG GCTCTCTGCC CTGCTGCAGG CGGCCGAGCA AAGCGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006508881.1 |
CDS | 173..1102 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006508818.4 |
1 | ATGCACGCGG GGCTCCTGGG GCTCTCTGCC CTGCTGCAGG CGGCCGAGCA AAGCGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu74543 | |
Clone ID Related Accession (Same CDS sequence) | XM_011242065.2 , XM_011242065.3 | |
Accession Version | XM_011242065.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 963bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | XK-related protein 5 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000074.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011242065.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCACGCGG GGCTCCTGGG GCTCTCTGCC CTGCTGCAGG CGGCCGAGCA AAGCGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011240367.1 |
CDS | 173..1135 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011242065.3 |
1 | ATGCACGCGG GGCTCCTGGG GCTCTCTGCC CTGCTGCAGG CGGCCGAGCA AAGCGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu04989 | |
Clone ID Related Accession (Same CDS sequence) | NM_001113350.2 | |
Accession Version | NM_001113350.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2031bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | XK-related protein 5 isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AY534251.1. On Nov 6, 2013 this sequence version replaced NM_001113350.1. Transcript Variant: This variant (1) encodes the longest isoform (a). ##Evidence-Data-START## Transcript exon combination :: AY534251.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849378 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCACGCGG GGCTCCTGGG GCTCTCTGCC CTGCTGCAGG CGGCCGAGCA AAGCGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001106821.1 |
CDS | 43..2073 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001113350.2 |
1 | ATGCACGCGG GGCTCCTGGG GCTCTCTGCC CTGCTGCAGG CGGCCGAGCA AAGCGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09338 | |
Clone ID Related Accession (Same CDS sequence) | NM_001286469.1 | |
Accession Version | NM_001286469.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2001bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | XK-related protein 5 isoform c | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC119200.5, AK045098.1 and AY534251.1. Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. This encodes isoform c, which has a shorter and distinct N-terminus, compared to isoform a. ##Evidence-Data-START## Transcript exon combination :: BC098477.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164141, SAMN01164142 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAAGAGGT TGGGGGTGGA TGAACGTGGC CTCTGCTCCA TAGTTTTCTA CTTTGCCACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001273398.1 |
CDS | 1146..3146 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001286469.1 |
1 | ATGAAGAGGT TGGGGGTGGA TGAACGTGGC CTCTGCTCCA TAGTTTTCTA CTTTGCCACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu05770 | |
Clone ID Related Accession (Same CDS sequence) | XM_006508817.2 , NM_176951.5 , XM_006508817.3 | |
Accession Version | XM_006508817.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1533bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | XK-related protein 5 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000074.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006508817.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGCCAG GCCACCATAC CATGCTATGG GCTGCTCTCT TGTGCCAGCA GCTCTGGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006508880.1 |
CDS | 526..2058 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006508817.3 |
1 | ATGAAGCCAG GCCACCATAC CATGCTATGG GCTGCTCTCT TGTGCCAGCA GCTCTGGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. |