Gene Symbol | Trim56 |
Entrez Gene ID | 384309 |
Full Name | tripartite motif-containing 56 |
Synonyms | A130009K11Rik,Gm452,RNF109 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Trim56 cDNA ORF clone
Gene Symbol | Trim56 |
Entrez Gene ID | 384309 |
Full Name | tripartite motif-containing 56 |
Synonyms | A130009K11Rik,Gm452,RNF109 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006504441.4 | XP_006504504.1 | E3 ubiquitin-protein ligase TRIM56 isoform X1 |
XM_006504441.2 | XP_006504504.1 | E3 ubiquitin-protein ligase TRIM56 isoform X1 |
NM_201373.4 | NP_958761.1 | E3 ubiquitin-protein ligase TRIM56 |
XM_006504441.3 | XP_006504504.1 | E3 ubiquitin-protein ligase TRIM56 isoform X1 |
XM_011240883.1 | XP_011239185.1 | E3 ubiquitin-protein ligase TRIM56 isoform X1 |
XM_011240883.2 | XP_011239185.1 | E3 ubiquitin-protein ligase TRIM56 isoform X1 |
The ubiquitin ligase TRIM56 regulates innate immune responses to intracellular double-stranded DNA.
Tsuchida T, Zou J, Saitoh T, Kumar H, Abe T, Matsuura Y, Kawai T, Akira S
Immunity33(5)765-76(2010 Nov)
TRIM E3 ligases interfere with early and late stages of the retroviral life cycle.
Uchil PD, Quinlan BD, Chan WT, Luna JM, Mothes W
PLoS pathogens4(2)e16(2008 Feb)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Trim56 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Trim56 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu13538 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504441.4 , XM_006504441.2 , NM_201373.4 , XM_006504441.3 , XM_011240883.1 , XM_011240883.2 | |
Accession Version | NM_201373.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2205bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-22 | |
Organism | Mus musculus(house mouse) | |
Product | E3 ubiquitin-protein ligase TRIM56 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC147986.3. On Apr 22, 2011 this sequence version replaced NM_201373.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BC045615.1, BG976873.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164143 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_958761.1 |
CDS | 263..2467 |
Translation |
Target ORF information:
Target ORF information:
|
NM_201373.4 |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu13538 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504441.4 , XM_006504441.2 , NM_201373.4 , XM_006504441.3 , XM_011240883.1 , XM_011240883.2 | |
Accession Version | XM_006504441.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2205bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | E3 ubiquitin-protein ligase TRIM56 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000071.6) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006504441.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006504504.1 |
CDS | 340..2544 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006504441.4 |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu13538 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504441.4 , XM_006504441.2 , NM_201373.4 , XM_006504441.3 , XM_011240883.1 , XM_011240883.2 | |
Accession Version | XM_006504441.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2205bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-02-08 | |
Organism | Mus musculus(House mouse) | |
Product | E3 ubiquitin-protein ligase TRIM56 isoform X1 | |
Comment |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006504504.1 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006504441.2 |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu13538 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504441.4 , XM_006504441.2 , NM_201373.4 , XM_006504441.3 , XM_011240883.1 , XM_011240883.2 | |
Accession Version | XM_006504441.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2205bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | E3 ubiquitin-protein ligase TRIM56 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000071.6) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006504441.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006504504.1 |
CDS | 341..2545 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006504441.3 |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu13538 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504441.4 , XM_006504441.2 , NM_201373.4 , XM_006504441.3 , XM_011240883.1 , XM_011240883.2 | |
Accession Version | XM_011240883.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2205bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | E3 ubiquitin-protein ligase TRIM56 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000071.6) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011239185.1 |
CDS | 335..2539 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011240883.1 |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu13538 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504441.4 , XM_006504441.2 , NM_201373.4 , XM_006504441.3 , XM_011240883.1 , XM_011240883.2 | |
Accession Version | XM_011240883.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2205bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | E3 ubiquitin-protein ligase TRIM56 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000071.6) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011240883.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011239185.1 |
CDS | 331..2535 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011240883.2 |
1 | ATGAACTCCA AAGACTCCTC CCCAACTCTG CTGGAAGCTC TGAGCAGCGA TTTCCTAGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The ubiquitin ligase TRIM56 regulates innate immune responses to intracellular double-stranded DNA. |
TRIM E3 ligases interfere with early and late stages of the retroviral life cycle. |