Gene Symbol | BC052040 |
Entrez Gene ID | 399568 |
Full Name | cDNA sequence BC052040 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » BC052040 cDNA ORF clone
Gene Symbol | BC052040 |
Entrez Gene ID | 399568 |
Full Name | cDNA sequence BC052040 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_017319081.1 | XP_017174570.1 | uncharacterized protein C15orf41 homolog isoform X3 |
XM_017319079.2 | XP_017174568.1 | uncharacterized protein C15orf41 homolog isoform X2 |
XM_017319081.2 | XP_017174570.1 | uncharacterized protein C15orf41 homolog isoform X3 |
NM_001145898.1 | NP_001139370.1 | protein C15orf41 homolog isoform 1 |
XM_017319079.1 | XP_017174568.1 | uncharacterized protein C15orf41 homolog isoform X2 |
XM_030251825.1 | XP_030107685.1 | uncharacterized protein C15orf41 homolog isoform X4 |
XM_006499845.3 | XP_006499908.1 | uncharacterized protein C15orf41 homolog isoform X1 |
XM_017319080.1 | XP_017174569.1 | uncharacterized protein C15orf41 homolog isoform X2 |
NM_207264.4 | NP_997147.3 | protein C15orf41 homolog isoform 2 |
Pan troglodytes (chimpanzee) | C15H15orf41 | XP_510289.3 |
Mus musculus (house mouse) | BC052040 | NP_997147.3 |
Rattus norvegicus (Norway rat) | RGD1563680 | XP_575206.1 |
Danio rerio (zebrafish) | zgc:154061 | NP_001070190.1 |
Homo sapiens (human) | C15orf41 | NP_001123482.1 |
Canis lupus familiaris (dog) | C30H15orf41 | XP_849922.2 |
Bos taurus (cattle) | C10H15orf41 | NP_001015668.1 |
LOC100430470 | XP_002804768.1 | |
Gallus gallus (chicken) | C5H15ORF41 | NP_001026371.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP005605 | XP_315617.3 |
Xenopus tropicalis (tropical clawed frog) | c15orf41 | NP_001016489.1 |
Drosophila melanogaster (fruit fly) | CG12713 | NP_648806.1 |
Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette.
Taniwaki T, Haruna K, Nakamura H, Sekimoto T, Oike Y, Imaizumi T, Saito F, Muta M, Soejima Y, Utoh A, Nakagata N, Araki M, Yamamura K, Araki K
Development, growth & differentiation47(3)163-72(2005 Apr)
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC, Babbitt PC, Ferrin TE
Nucleic acids research31(1)278-81(2003 Jan)
Exchangeable gene trap using the Cre/mutated lox system.
Araki K, Imaizumi T, Sekimoto T, Yoshinobu K, Yoshimuta J, Akizuki M, Miura K, Araki M, Yamamura K
Cellular and molecular biology (Noisy-le-Grand, France)45(5)737-50(1999 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following BC052040 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the BC052040 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu16322 | |
Clone ID Related Accession (Same CDS sequence) | NM_001145898.1 | |
Accession Version | NM_001145898.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 864bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-28 | |
Organism | Mus musculus(house mouse) | |
Product | protein C15orf41 homolog isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY210936.1, BC052040.1, AK167625.1 and AL929037.3. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK167625.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164133 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGATACTAA CCAAAGCCCA GTACGAGGAG ATAGCCCAGT GCCTAGTGTC TGTACCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001139370.1 |
CDS | 170..1033 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001145898.1 |
1 | ATGATACTAA CCAAAGCCCA GTACGAGGAG ATAGCCCAGT GCCTAGTGTC TGTACCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu30666 | |
Clone ID Related Accession (Same CDS sequence) | XM_006499845.3 | |
Accession Version | XM_006499845.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1080bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein C15orf41 homolog isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006499845.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATACTAA CCAAAGCCCA GTACGAGGAG ATAGCCCAGT GCCTAGTGTC TGTACCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006499908.1 |
CDS | 268..1347 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006499845.3 |
1 | ATGATACTAA CCAAAGCCCA GTACGAGGAG ATAGCCCAGT GCCTAGTGTC TGTACCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu15880 | |
Clone ID Related Accession (Same CDS sequence) | NM_207264.4 | |
Accession Version | NM_207264.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 846bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-27 | |
Organism | Mus musculus(house mouse) | |
Product | protein C15orf41 homolog isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY210936.1, BC052040.1 and AL929037.3. On Mar 21, 2009 this sequence version replaced NM_207264.3. Transcript Variant: This variant (2) uses an alternate in-frame splice junction at the 5' end of a coding exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK090080.1, AK154260.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGATACTAA CCAAAGCCCA GTACGAGGAG ATAGCCCAGT GCCTAGTGTC TGTACCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_997147.3 |
CDS | 170..1015 |
Translation |
Target ORF information:
Target ORF information:
|
NM_207264.4 |
1 | ATGATACTAA CCAAAGCCCA GTACGAGGAG ATAGCCCAGT GCCTAGTGTC TGTACCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu80324 | |
Clone ID Related Accession (Same CDS sequence) | XM_017319079.2 , XM_017319079.1 , XM_017319080.1 | |
Accession Version | XM_017319079.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1041bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein C15orf41 homolog isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_017319079.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTGGC AGACTTGGAG ACATAGTCCC TCCAACTTGC TCCCTCGTCC TTTTCTCTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017174568.1 |
CDS | 1085..2125 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017319079.2 |
1 | ATGAACTGGC AGACTTGGAG ACATAGTCCC TCCAACTTGC TCCCTCGTCC TTTTCTCTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu80324 | |
Clone ID Related Accession (Same CDS sequence) | XM_017319079.2 , XM_017319079.1 , XM_017319080.1 | |
Accession Version | XM_017319079.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1041bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein C15orf41 homolog isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTGGC AGACTTGGAG ACATAGTCCC TCCAACTTGC TCCCTCGTCC TTTTCTCTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017174568.1 |
CDS | 276..1316 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017319079.1 |
1 | ATGAACTGGC AGACTTGGAG ACATAGTCCC TCCAACTTGC TCCCTCGTCC TTTTCTCTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu80324 | |
Clone ID Related Accession (Same CDS sequence) | XM_017319079.2 , XM_017319079.1 , XM_017319080.1 | |
Accession Version | XM_017319080.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1041bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein C15orf41 homolog isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTGGC AGACTTGGAG ACATAGTCCC TCCAACTTGC TCCCTCGTCC TTTTCTCTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017174569.1 |
CDS | 87..1127 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017319080.1 |
1 | ATGAACTGGC AGACTTGGAG ACATAGTCCC TCCAACTTGC TCCCTCGTCC TTTTCTCTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu80325 | |
Clone ID Related Accession (Same CDS sequence) | XM_017319081.1 , XM_017319081.2 | |
Accession Version | XM_017319081.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 900bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein C15orf41 homolog isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATACTAA CCAAAGCCCA GTACGAGGAG ATAGCCCAGT GCCTAGTGTC TGTACCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017174570.1 |
CDS | 268..1167 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017319081.1 |
1 | ATGATACTAA CCAAAGCCCA GTACGAGGAG ATAGCCCAGT GCCTAGTGTC TGTACCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu80325 | |
Clone ID Related Accession (Same CDS sequence) | XM_017319081.1 , XM_017319081.2 | |
Accession Version | XM_017319081.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 900bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein C15orf41 homolog isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_017319081.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATACTAA CCAAAGCCCA GTACGAGGAG ATAGCCCAGT GCCTAGTGTC TGTACCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017174570.1 |
CDS | 268..1167 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017319081.2 |
1 | ATGATACTAA CCAAAGCCCA GTACGAGGAG ATAGCCCAGT GCCTAGTGTC TGTACCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu87922 | |
Clone ID Related Accession (Same CDS sequence) | XM_030251825.1 | |
Accession Version | XM_030251825.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 807bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | uncharacterized protein C15orf41 homolog isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTGGC AGACTTGGAG ACATAGTCCC TCCAACTTGC TCCCTCGTCC TTTTCTCTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030107685.1 |
CDS | 1085..1891 |
Translation |
Target ORF information:
Target ORF information:
|
XM_030251825.1 |
1 | ATGAACTGGC AGACTTGGAG ACATAGTCCC TCCAACTTGC TCCCTCGTCC TTTTCTCTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. |
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. |
Exchangeable gene trap using the Cre/mutated lox system. |