Gene Symbol | Tmem54 |
Entrez Gene ID | 66260 |
Full Name | transmembrane protein 54 |
Synonyms | 1810017F10Rik,AI507302 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Tmem54 cDNA ORF clone
Gene Symbol | Tmem54 |
Entrez Gene ID | 66260 |
Full Name | transmembrane protein 54 |
Synonyms | 1810017F10Rik,AI507302 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006503270.3 | XP_006503333.1 | transmembrane protein 54 isoform X1 |
NM_025452.4 | NP_079728.2 | transmembrane protein 54 isoform 1 |
NM_133881.1 | NP_598642.1 | transmembrane protein 54 isoform 2 |
NM_001290706.1 | NP_001277635.1 | transmembrane protein 54 isoform 3 |
XM_006503270.4 | XP_006503333.1 | transmembrane protein 54 isoform X1 |
Pan troglodytes (chimpanzee) | TMEM54 | XP_003308047.1 |
LOC710342 | XP_002802349.1 | |
Canis lupus familiaris (dog) | TMEM54 | XP_854589.2 |
Rattus norvegicus (Norway rat) | Tmem54 | NP_001029323.1 |
Mus musculus (house mouse) | Tmem54 | NP_079728.2 |
Homo sapiens (human) | TMEM54 | NP_277039.1 |
Xenopus tropicalis (tropical clawed frog) | tmem54 | XP_002940070.2 |
Bos taurus (cattle) | TMEM54 | NP_001029536.1 |
A Grhl2-dependent gene network controls trophoblast branching morphogenesis.
Walentin K, Hinze C, Werth M, Haase N, Varma S, Morell R, Aue A, P?tschke E, Warburton D, Qiu A, Barasch J, Purf?rst B, Dieterich C, Popova E, Bader M, Dechend R, Staff AC, Yurtdas ZY, Kilic E, Schmidt-Ott KM
Development (Cambridge, England)142(6)1125-36(2015 Mar)
Pancreatic islet and progenitor cell surface markers with cell sorting potential.
Hald J, Galbo T, Rescan C, Radzikowski L, Sprinkel AE, Heimberg H, Ahnfelt-R?nne J, Jensen J, Scharfmann R, Gradwohl G, Kaestner KH, Stoeckert C Jr, Jensen JN, Madsen OD
Diabetologia55(1)154-65(2012 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Tmem54 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Tmem54 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu00513 | |
Clone ID Related Accession (Same CDS sequence) | NM_025452.4 | |
Accession Version | NM_025452.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 660bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-20 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 54 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL606977.28, BY092384.1, AK008935.1 and BQ032787.1. On Feb 3, 2011 this sequence version replaced NM_025452.3. Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (1). ##Evidence-Data-START## Transcript exon combination :: BC019563.1, AK008935.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTGTCTGC GCATAGGTAG CCTGAATGTG GATGAGTTCC GGAAGGTGCT GATGAAGACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_079728.2 |
CDS | 187..846 |
Translation |
Target ORF information:
Target ORF information:
|
NM_025452.4 |
1 | ATGTGTCTGC GCATAGGTAG CCTGAATGTG GATGAGTTCC GGAAGGTGCT GATGAAGACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu10298 | |
Clone ID Related Accession (Same CDS sequence) | NM_133881.1 | |
Accession Version | NM_133881.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 558bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-21 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 54 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL606977.28, BY092384.1, AK009830.1 and BQ032787.1. Transcript Variant: This variant (2) has multiple differences in the coding region, compared to variant 1. It encodes isoform 2 which is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK007525.1, AK009830.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTGTCTGC GCATAGGTAG CCTGAATGTG GATGAGTTCC GGAAGGTGCT GATGAAGACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_598642.1 |
CDS | 187..744 |
Translation |
Target ORF information:
Target ORF information:
|
NM_133881.1 |
1 | ATGTGTCTGC GCATAGGTAG CCTGAATGTG GATGAGTTCC GGAAGGTGCT GATGAAGACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu17264 | |
Clone ID Related Accession (Same CDS sequence) | NM_001290706.1 | |
Accession Version | NM_001290706.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 618bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-20 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 54 isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY092384.1, BY079646.1, AK008935.1, AK009830.1 and AK007525.1. On or before Mar 19, 2014 this sequence version replaced XM_006503269.1, XM_006537013.1. Transcript Variant: This variant (3) uses an alternate splice site in the 3' terminal exon, compared to variant 1. It encodes isoform 3, which is shorter and has a distinct C-terminus, compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: BQ926503.1, BI526405.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTGTCTGC GCATAGGTAG CCTGAATGTG GATGAGTTCC GGAAGGTGCT GATGAAGACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001277635.1 |
CDS | 169..786 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001290706.1 |
1 | ATGTGTCTGC GCATAGGTAG CCTGAATGTG GATGAGTTCC GGAAGGTGCT GATGAAGACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu33720 | |
Clone ID Related Accession (Same CDS sequence) | XM_006503270.3 , XM_006503270.4 | |
Accession Version | XM_006503270.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 600bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 54 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006503270.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTGTCTGC GCATAGGTAG CCTGAATGTG GATGAGTTCC GGAAGGTGCT GATGAAGACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006503333.1 |
CDS | 198..797 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006503270.3 |
1 | ATGTGTCTGC GCATAGGTAG CCTGAATGTG GATGAGTTCC GGAAGGTGCT GATGAAGACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu33720 | |
Clone ID Related Accession (Same CDS sequence) | XM_006503270.3 , XM_006503270.4 | |
Accession Version | XM_006503270.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 600bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 54 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006503270.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTGTCTGC GCATAGGTAG CCTGAATGTG GATGAGTTCC GGAAGGTGCT GATGAAGACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006503333.1 |
CDS | 188..787 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006503270.4 |
1 | ATGTGTCTGC GCATAGGTAG CCTGAATGTG GATGAGTTCC GGAAGGTGCT GATGAAGACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A Grhl2-dependent gene network controls trophoblast branching morphogenesis. |
Pancreatic islet and progenitor cell surface markers with cell sorting potential. |