Gene Symbol | DPH6 |
Entrez Gene ID | 66632 |
Full Name | diphthamine biosynthesis 6 |
Synonyms | 5730421E18Rik,Atpbd4 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(House mouse) |
Genome |
ORF » Species Summary » Mus musculus » DPH6 cDNA ORF clone
Gene Symbol | DPH6 |
Entrez Gene ID | 66632 |
Full Name | diphthamine biosynthesis 6 |
Synonyms | 5730421E18Rik,Atpbd4 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(House mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001356438.1 | NP_001343367.1 | diphthine--ammonia ligase isoform 1 |
XM_006500019.4 | XP_006500082.1 | diphthine--ammonia ligase isoform X1 |
NM_001356439.1 | NP_001343368.1 | diphthine--ammonia ligase isoform 3 |
XM_006500018.3 | XP_006500081.1 | diphthine--ammonia ligase isoform X1 |
XM_006500019.3 | XP_006500082.1 | diphthine--ammonia ligase isoform X2 |
NM_025675.5 | NP_079951.1 | diphthine--ammonia ligase isoform 2 |
NM_025675.4 | NP_079951.1 | diphthine--ammonia ligase |
ATPBD4 | XP_001089692.2 | |
Drosophila melanogaster (fruit fly) | CG1578 | NP_572749.2 |
Kluyveromyces lactis | KLLA0D16984g | XP_453811.1 |
Eremothecium gossypii | AGOS_AGL164W | NP_986503.1 |
Schizosaccharomyces pombe (fission yeast) | mug71 | NP_595310.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_00500 | XP_003718561.1 |
Pan troglodytes (chimpanzee) | ATPBD4 | XP_001135595.2 |
Canis lupus familiaris (dog) | DPH6 | XP_005638265.1 |
Mus musculus (house mouse) | Dph6 | NP_079951.1 |
Rattus norvegicus (Norway rat) | Dph6 | NP_001014203.1 |
Saccharomyces cerevisiae (baker's yeast) | DPH6 | NP_013244.1 |
Neurospora crassa | NCU02670 | XP_965443.2 |
Xenopus tropicalis (tropical clawed frog) | dph6 | XP_002932882.1 |
Homo sapiens (human) | DPH6 | NP_542381.1 |
Bos taurus (cattle) | DPH6 | NP_001070484.1 |
Danio rerio (zebrafish) | dph6 | NP_001013308.2 |
Caenorhabditis elegans (roundworm) | E01A2.5 | NP_491303.3 |
Gallus gallus (chicken) | ATPBD4 | NP_001186639.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP001943 | XP_321119.5 |
A conditional knockout resource for the genome-wide study of mouse gene function.
Skarnes WC, Rosen B, West AP, Koutsourakis M, Bushell W, Iyer V, Mujica AO, Thomas M, Harrow J, Cox T, Jackson D, Severin J, Biggs P, Fu J, Nefedov M, de Jong PJ, Stewart AF, Bradley A
Nature474(7351)337-42(2011 Jun)
A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, N?rnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S, Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Doll? P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A
PLoS biology9(1)e1000582(2011 Jan)
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Hansen GM, Markesich DC, Burnett MB, Zhu Q, Dionne KM, Richter LJ, Finnell RH, Sands AT, Zambrowicz BP, Abuin A
Genome research18(10)1670-9(2008 Oct)
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC, Babbitt PC, Ferrin TE
Nucleic acids research31(1)278-81(2003 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following DPH6 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the DPH6 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu00855 | |
Clone ID Related Accession (Same CDS sequence) | NM_025675.5 , NM_025675.4 | |
Accession Version | NM_025675.5 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 804bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-05 | |
Organism | Mus musculus(house mouse) | |
Product | diphthine--ammonia ligase isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL732404.7. On Oct 4, 2017 this sequence version replaced NM_025675.4. Transcript Variant: This variant (2) uses an alternate splice junction in the 3' end compared to variant 1, that causes a frameshift. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AK017595.1, AK088160.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164134, SAMN01164138 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGGGTCG CGGCCCTGAT CAGTGGTGGG AAGGACAGCT GTTACAACAT GATGCAGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_079951.1 |
CDS | 112..915 |
Translation |
Target ORF information:
Target ORF information:
|
NM_025675.5 |
1 | ATGAGGGTCG CGGCCCTGAT CAGTGGTGGG AAGGACAGCT GTTACAACAT GATGCAGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu00855 | |
Clone ID Related Accession (Same CDS sequence) | NM_025675.5 , NM_025675.4 | |
Accession Version | NM_025675.4 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 804bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-02-14 | |
Organism | Mus musculus(House mouse) | |
Product | diphthine--ammonia ligase | |
Comment | PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AL732404.7. On Aug 22, 2007 this sequence version replaced NM_025675.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AK088160.1, AK017595.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164134, SAMN01164135 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAGGGTCG CGGCCCTGAT CAGTGGTGGG AAGGACAGCT GTTACAACAT GATGCAGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_079951.1 |
CDS | 76..879 |
Translation |
Target ORF information:
Target ORF information:
|
NM_025675.4 |
1 | ATGAGGGTCG CGGCCCTGAT CAGTGGTGGG AAGGACAGCT GTTACAACAT GATGCAGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu83852 | |
Clone ID Related Accession (Same CDS sequence) | NM_001356439.1 | |
Accession Version | NM_001356439.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 678bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-24 | |
Organism | Mus musculus(house mouse) | |
Product | diphthine--ammonia ligase isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL732404.7. On Oct 4, 2017 this sequence version replaced XM_006500018.3. Transcript Variant: This variant (3) lacks an alternate internal exon and uses an alternate splice junction compared to variant 1. The resulting isoform (3) has the same N- and C-termini but is shorter compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BI735070.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164134, SAMN01164138 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGGGTCG CGGCCCTGAT CAGTGGTGGG AAGGACAGCT GTTACAACAT GATGCAGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001343368.1 |
CDS | 112..789 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001356439.1 |
1 | ATGAGGGTCG CGGCCCTGAT CAGTGGTGGG AAGGACAGCT GTTACAACAT GATGCAGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu30784 | |
Clone ID Related Accession (Same CDS sequence) | XM_006500018.3 | |
Accession Version | XM_006500018.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 810bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(House mouse) | |
Product | diphthine--ammonia ligase isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006500018.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTCGAGG GCAGGCAGCG CAGCAGACAC CAGGTCGAGG ACCGCGCGTG TAGGTCCAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006500081.1 |
CDS | 66..875 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006500018.3 |
1 | ATGGTCGAGG GCAGGCAGCG CAGCAGACAC CAGGTCGAGG ACCGCGCGTG TAGGTCCAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu30785 | |
Clone ID Related Accession (Same CDS sequence) | XM_006500019.4 , XM_006500019.3 | |
Accession Version | XM_006500019.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 576bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | diphthine--ammonia ligase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006500019.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTCGAGG GCAGGCAGCG CAGCAGACAC CAGGTCGAGG ACCGCGCGTG TAGGTCCAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006500082.1 |
CDS | 70..645 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006500019.3 |
1 | ATGGTCGAGG GCAGGCAGCG CAGCAGACAC CAGGTCGAGG ACCGCGCGTG TAGGTCCAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu83851 | |
Clone ID Related Accession (Same CDS sequence) | NM_001356438.1 | |
Accession Version | NM_001356438.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 816bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-24 | |
Organism | Mus musculus(house mouse) | |
Product | diphthine--ammonia ligase isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL732404.7, AK088160.1 and AK145789.1. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK145789.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164138, SAMN01164139 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGGGTCG CGGCCCTGAT CAGTGGTGGG AAGGACAGCT GTTACAACAT GATGCAGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001343367.1 |
CDS | 112..927 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001356438.1 |
1 | ATGAGGGTCG CGGCCCTGAT CAGTGGTGGG AAGGACAGCT GTTACAACAT GATGCAGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu30785 | |
Clone ID Related Accession (Same CDS sequence) | XM_006500019.4 , XM_006500019.3 | |
Accession Version | XM_006500019.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 576bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | diphthine--ammonia ligase isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000068.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006500019.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTCGAGG GCAGGCAGCG CAGCAGACAC CAGGTCGAGG ACCGCGCGTG TAGGTCCAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006500082.1 |
CDS | 62..637 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006500019.4 |
1 | ATGGTCGAGG GCAGGCAGCG CAGCAGACAC CAGGTCGAGG ACCGCGCGTG TAGGTCCAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A conditional knockout resource for the genome-wide study of mouse gene function. |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. |
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. |