Gene Symbol | 3110040N11Rik |
Entrez Gene ID | 67290 |
Full Name | RIKEN cDNA 3110040N11 gene |
Synonyms | AI851475 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » 3110040N11Rik cDNA ORF clone
gRNAs
Gene Symbol | 3110040N11Rik |
Entrez Gene ID | 67290 |
Full Name | RIKEN cDNA 3110040N11 gene |
Synonyms | AI851475 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_011250896.2 | XP_011249198.1 | UPF0235 protein C15orf40 homolog isoform X1 |
XM_011250897.2 | XP_011249199.1 | UPF0235 protein C15orf40 homolog isoform X2 |
XM_006541114.3 | XP_006541177.1 | UPF0235 protein C15orf40 homolog isoform X1 |
NM_026077.3 | NP_080353.1 | UPF0235 protein C15orf40 homolog |
NM_026077.4 | NP_080353.1 | UPF0235 protein C15orf40 homolog isoform 2 |
XM_011250897.3 | XP_011249199.1 | UPF0235 protein C15orf40 homolog isoform X2 |
NM_001370770.1 | NP_001357699.1 | UPF0235 protein C15orf40 homolog isoform 1 |
XM_011250896.3 | XP_011249198.1 | UPF0235 protein C15orf40 homolog isoform X1 |
Pan troglodytes (chimpanzee) | C15H15orf40 | XP_001148978.2 |
C7H15orf40 | XP_001111768.1 | |
Canis lupus familiaris (dog) | C3H15orf40 | XP_545872.3 |
Drosophila melanogaster (fruit fly) | CG14966 | NP_647784.1 |
Bos taurus (cattle) | C21H15orf40 | NP_001068854.1 |
Rattus norvegicus (Norway rat) | LOC100363116 | XP_003750283.1 |
Xenopus tropicalis (tropical clawed frog) | c15orf40 | NP_001004913.1 |
Mus musculus (house mouse) | 3110040N11Rik | NP_080353.1 |
Rattus norvegicus (Norway rat) | RGD1305713 | NP_001019920.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP001528 | XP_321597.4 |
Homo sapiens (human) | C15orf40 | NP_653198.2 |
Gallus gallus (chicken) | C10H15ORF40 | XP_413838.3 |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, N?rnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S, Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Doll? P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A
PLoS biology9(1)e1000582(2011 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following 3110040N11Rik gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the 3110040N11Rik cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu01523 | |
Clone ID Related Accession (Same CDS sequence) | XM_011250897.2 , NM_026077.3 , NM_026077.4 , XM_011250897.3 | |
Accession Version | NM_026077.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 381bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-15 | |
Organism | Mus musculus(house mouse) | |
Product | UPF0235 protein C15orf40 homolog | |
Comment | Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from AK019261.1. On Jun 10, 2007 this sequence version replaced NM_026077.2. ##Evidence-Data-START## Transcript exon combination :: AK019261.1, AK170168.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCCTAAGA AAGCCGGTGC GACAAGCAAG GGTAAAAACC AAACCAAAGA ACCAGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_080353.1 |
CDS | 70..450 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCTAAGA AAGCCGGTGC GACAAGCAAG GGTAAAAACC AAACCAAAGA ACCAGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu01523 | |
Clone ID Related Accession (Same CDS sequence) | XM_011250897.2 , NM_026077.3 , NM_026077.4 , XM_011250897.3 | |
Accession Version | NM_026077.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 381bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-27 | |
Organism | Mus musculus(house mouse) | |
Product | UPF0235 protein C15orf40 homolog isoform 2 | |
Comment | Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from AC102077.7. On May 29, 2019 this sequence version replaced NM_026077.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AK019261.1, SRR7345562.2298949.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCCTAAGA AAGCCGGTGC GACAAGCAAG GGTAAAAACC AAACCAAAGA ACCAGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_080353.1 |
CDS | 72..452 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCTAAGA AAGCCGGTGC GACAAGCAAG GGTAAAAACC AAACCAAAGA ACCAGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu38980 | |
Clone ID Related Accession (Same CDS sequence) | XM_011250896.2 , XM_006541114.3 , NM_001370770.1 , XM_011250896.3 | |
Accession Version | NM_001370770.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 546bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-05-28 | |
Organism | Mus musculus(house mouse) | |
Product | UPF0235 protein C15orf40 homolog isoform 1 | |
Comment | Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from AC102077.7. On May 29, 2019 this sequence version replaced XM_006541114.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR7345562.3681352.1, SRR7345562.3560392.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCTGCTGC TTGCTGTAGG TCGGTGTGCT TGGCCTCTGT TAGACTCCTG TGTGGTTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001357699.1 |
CDS | 10..555 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTGCTGC TTGCTGTAGG TCGGTGTGCT TGGCCTCTGT TAGACTCCTG TGTGGTTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu01523 | |
Clone ID Related Accession (Same CDS sequence) | XM_011250897.2 , NM_026077.3 , NM_026077.4 , XM_011250897.3 | |
Accession Version | XM_011250897.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 381bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | UPF0235 protein C15orf40 homolog isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_011250897.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCTAAGA AAGCCGGTGC GACAAGCAAG GGTAAAAACC AAACCAAAGA ACCAGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011249199.1 |
CDS | 1076..1456 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCTAAGA AAGCCGGTGC GACAAGCAAG GGTAAAAACC AAACCAAAGA ACCAGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu38980 | |
Clone ID Related Accession (Same CDS sequence) | XM_011250896.2 , XM_006541114.3 , NM_001370770.1 , XM_011250896.3 | |
Accession Version | XM_011250896.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 546bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | UPF0235 protein C15orf40 homolog isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_011250896.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTGCTGC TTGCTGTAGG TCGGTGTGCT TGGCCTCTGT TAGACTCCTG TGTGGTTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011249198.1 |
CDS | 1021..1566 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTGCTGC TTGCTGTAGG TCGGTGTGCT TGGCCTCTGT TAGACTCCTG TGTGGTTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu38980 | |
Clone ID Related Accession (Same CDS sequence) | XM_011250896.2 , XM_006541114.3 , NM_001370770.1 , XM_011250896.3 | |
Accession Version | XM_006541114.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 546bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | UPF0235 protein C15orf40 homolog isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006541114.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTGCTGC TTGCTGTAGG TCGGTGTGCT TGGCCTCTGT TAGACTCCTG TGTGGTTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006541177.1 |
CDS | 1022..1567 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTGCTGC TTGCTGTAGG TCGGTGTGCT TGGCCTCTGT TAGACTCCTG TGTGGTTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu01523 | |
Clone ID Related Accession (Same CDS sequence) | XM_011250897.2 , NM_026077.3 , NM_026077.4 , XM_011250897.3 | |
Accession Version | XM_011250897.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 381bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | UPF0235 protein C15orf40 homolog isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011250897.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCTAAGA AAGCCGGTGC GACAAGCAAG GGTAAAAACC AAACCAAAGA ACCAGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011249199.1 |
CDS | 116..496 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCTAAGA AAGCCGGTGC GACAAGCAAG GGTAAAAACC AAACCAAAGA ACCAGAGACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu38980 | |
Clone ID Related Accession (Same CDS sequence) | XM_011250896.2 , XM_006541114.3 , NM_001370770.1 , XM_011250896.3 | |
Accession Version | XM_011250896.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 546bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | UPF0235 protein C15orf40 homolog isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011250896.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTGCTGC TTGCTGTAGG TCGGTGTGCT TGGCCTCTGT TAGACTCCTG TGTGGTTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011249198.1 |
CDS | 54..599 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTGCTGC TTGCTGTAGG TCGGTGTGCT TGGCCTCTGT TAGACTCCTG TGTGGTTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |