Gene Symbol | Xab2 |
Entrez Gene ID | 67439 |
Full Name | XPA binding protein 2 |
Synonyms | 0610041O14Rik,AV025587 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Xab2 cDNA ORF clone
gRNAs
Gene Symbol | Xab2 |
Entrez Gene ID | 67439 |
Full Name | XPA binding protein 2 |
Synonyms | 0610041O14Rik,AV025587 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_030243737.1 | XP_030099597.1 | pre-mRNA-splicing factor SYF1 isoform X2 |
XM_011242072.3 | XP_011240374.1 | pre-mRNA-splicing factor SYF1 isoform X3 |
XM_011242072.2 | XP_011240374.1 | pre-mRNA-splicing factor SYF1 isoform X2 |
NM_026156.2 | NP_080432.1 | pre-mRNA-splicing factor SYF1 |
XM_006508864.2 | XP_006508927.1 | pre-mRNA-splicing factor SYF1 isoform X1 |
Drosophila melanogaster (fruit fly) | CG6197 | NP_610891.1 |
Oryza sativa (rice) | Os07g0644300 | NP_001060448.1 |
Xenopus tropicalis (tropical clawed frog) | xab2 | NP_001135604.1 |
Bos taurus (cattle) | XAB2 | NP_001069387.1 |
Schizosaccharomyces pombe (fission yeast) | cwf3 | NP_596612.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_07087 | XP_003715277.1 |
Neurospora crassa | NCU08036 | XP_962706.1 |
Homo sapiens (human) | XAB2 | NP_064581.2 |
Canis lupus familiaris (dog) | XAB2 | XP_542113.3 |
Rattus norvegicus (Norway rat) | Xab2 | NP_620809.1 |
Arabidopsis thaliana (thale cress) | AT5G28740 | NP_198226.1 |
Pan troglodytes (chimpanzee) | XAB2 | XP_003316095.2 |
Danio rerio (zebrafish) | xab2 | NP_001038248.1 |
XAB2 | XP_001090436.2 | |
Mus musculus (house mouse) | Xab2 | NP_080432.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP012369 | XP_320187.4 |
Caenorhabditis elegans (roundworm) | C50F2.3 | NP_491250.1 |
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58.
Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S, Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N, Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y, Okado H, Hashimoto M, Asahara H
Developmental cell17(6)836-48(2009 Dec)
Laser capture microdissection and cDNA array analysis for identification of mouse KIAA/FLJ genes differentially expressed in the embryonic dorsal spinal cord.
Masuda T, Kai N, Sakuma C, Kobayashi K, Koga H, Yaginuma H
Brain research124961-7(2009 Jan)
Transgenic mice expressing Cre-recombinase specifically in retinal rod bipolar neurons.
Zhang XM, Chen BY, Ng AH, Tanner JA, Tay D, So KF, Rachel RA, Copeland NG, Jenkins NA, Huang JD
Investigative ophthalmology & visual science46(10)3515-20(2005 Oct)
Disruption of mouse XAB2 gene involved in pre-mRNA splicing, transcription and transcription-coupled DNA repair results in preimplantation lethality.
Yonemasu R, Minami M, Nakatsu Y, Takeuchi M, Kuraoka I, Matsuda Y, Higashi Y, Kondoh H, Tanaka K
DNA repair4(4)479-91(2005 Apr)
Genomic analysis of mouse retinal development.
Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong WH, Cepko CL
PLoS biology2(9)E247(2004 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
XAB2 has an essential function in mouse embryogenesis.
Title: Disruption of mouse XAB2 gene involved in pre-mRNA splicing, transcription and transcription-coupled DNA repair results in preimplantation lethality.
The following Xab2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Xab2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu70132 | |
Clone ID Related Accession (Same CDS sequence) | XM_011242072.3 , XM_011242072.2 | |
Accession Version | XM_011242072.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1365bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | pre-mRNA-splicing factor SYF1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000074.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_011242072.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACAGCT GGATGATTCT CTGCCCATTA CCACAGGCTC GTGTCATCCT AGAGAAGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011240374.1 |
CDS | 394..1758 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGACAGCT GGATGATTCT CTGCCCATTA CCACAGGCTC GTGTCATCCT AGAGAAGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu70132 | |
Clone ID Related Accession (Same CDS sequence) | XM_011242072.3 , XM_011242072.2 | |
Accession Version | XM_011242072.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1365bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | pre-mRNA-splicing factor SYF1 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000074.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011242072.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACAGCT GGATGATTCT CTGCCCATTA CCACAGGCTC GTGTCATCCT AGAGAAGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011240374.1 |
CDS | 1172..2536 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGACAGCT GGATGATTCT CTGCCCATTA CCACAGGCTC GTGTCATCCT AGAGAAGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu01702 | |
Clone ID Related Accession (Same CDS sequence) | NM_026156.2 | |
Accession Version | NM_026156.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2568bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-07 | |
Organism | Mus musculus(house mouse) | |
Product | pre-mRNA-splicing factor SYF1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK002890.1. On Apr 6, 2007 this sequence version replaced NM_026156.1. ##Evidence-Data-START## Transcript exon combination :: AK002890.1, AK132434.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164135, SAMN01164140 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGTGGTGA TGGCGCGAGT TCCGCGTTCC GAGCGGCCGG ACCTTGTTTT TGAGGAAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_080432.1 |
CDS | 19..2586 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGTGGTGA TGGCGCGAGT TCCGCGTTCC GAGCGGCCGG ACCTTGTTTT TGAGGAAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu40450 | |
Clone ID Related Accession (Same CDS sequence) | XM_006508864.2 | |
Accession Version | XM_006508864.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2448bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | pre-mRNA-splicing factor SYF1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000074.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006508864.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCCTCC CTGTGCTACC CTGCTCATCA GCTCCCACCC CTCTACACCC AGTCACAATA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006508927.1 |
CDS | 211..2658 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCCCTCC CTGTGCTACC CTGCTCATCA GCTCCCACCC CTCTACACCC AGTCACAATA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu89931 | |
Clone ID Related Accession (Same CDS sequence) | XM_030243737.1 | |
Accession Version | XM_030243737.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2253bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | pre-mRNA-splicing factor SYF1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000074.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCACAAGA TGCCACGCCT GTGGTTAGAC TACTGCCAGT TTCTCATGGA CCAGGGAAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030099597.1 |
CDS | 198..2450 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCACAAGA TGCCACGCCT GTGGTTAGAC TACTGCCAGT TTCTCATGGA CCAGGGAAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. |
Laser capture microdissection and cDNA array analysis for identification of mouse KIAA/FLJ genes differentially expressed in the embryonic dorsal spinal cord. |
Transgenic mice expressing Cre-recombinase specifically in retinal rod bipolar neurons. |
Disruption of mouse XAB2 gene involved in pre-mRNA splicing, transcription and transcription-coupled DNA repair results in preimplantation lethality. |
Genomic analysis of mouse retinal development. |