Gene Symbol
Chmp2a
Entrez Gene ID
68953
Full Name
charged multivesicular body protein 2A
Synonyms
1500016L11Rik
General protein information
Preferred Namescharged multivesicular body protein 2A
Namescharged multivesicular body protein 2a chromatin modifying protein 2A chromatin-modifying protein 2a mVps2 vacuolar protein sorting-associated protein 2
Gene Type
protein-coding
Organism
Mus musculus(house mouse)
Genome
Chromosome: 7
Map Location: 7 A1|7
mRNA and Protein(s)
mRNA
Protein
Name
XM_006540345.2
XP_006540408.1
charged multivesicular body protein 2a isoform X1
NM_001360730.1
NP_001347659.1
charged multivesicular body protein 2a isoform a
XM_006540345.3
XP_006540408.1
charged multivesicular body protein 2a isoform X2
NM_026885.3
NP_081161.1
charged multivesicular body protein 2a isoform a
NM_001360733.1
NP_001347662.1
charged multivesicular body protein 2a isoform c
XM_006540344.1
XP_006540407.1
charged multivesicular body protein 2a isoform X1
XM_011250690.1
XP_011248992.1
charged multivesicular body protein 2a isoform X1
NM_001360731.1
NP_001347660.1
charged multivesicular body protein 2a isoform b
Xenopus tropicalis (tropical clawed frog)
chmp2a
NP_001005008.1
Homo sapiens (human)
CHMP2A
NP_940818.1
Canis lupus familiaris (dog)
CHMP2A
XP_850536.1
Anopheles gambiae (African malaria mosquito)
AgaP_AGAP001285
XP_321862.3
Caenorhabditis elegans (roundworm)
vps-2
NP_496717.1
Schizosaccharomyces pombe (fission yeast)
did4
NP_593871.3
Oryza sativa (rice)
Os07g0236800
NP_001059248.1
Bos taurus (cattle)
CHMP2A
NP_001029722.1
Mus musculus (house mouse)
Chmp2a
NP_081161.1
Rattus norvegicus (Norway rat)
Chmp2a
NP_001102376.1
Danio rerio (zebrafish)
bc2
NP_998682.1
Neurospora crassa
NCU00435
XP_956699.1
Pan troglodytes (chimpanzee)
CHMP2A
XP_003316813.1
CHMP2A
XP_001099219.1
Gallus gallus (chicken)
CHMP2A
NP_001074361.1
Drosophila melanogaster (fruit fly)
vps2
NP_651455.1
Magnaporthe oryzae (rice blast fungus)
MGG_05208
XP_003712753.1
Saccharomyces cerevisiae (baker's yeast)
DID4
NP_012924.2
Kluyveromyces lactis
KLLA0B13343g
XP_452125.1
Eremothecium gossypii
AGOS_ABR002C
NP_982948.1
Arabidopsis thaliana (thale cress)
VPS2.1
NP_565336.1
Related articles in PubMed
Germline Chd8 haploinsufficiency alters brain development in mouse.
Gompers AL, Su-Feher L, Ellegood J, Copping NA, Riyadh MA, Stradleigh TW, Pride MC, Schaffler MD, Wade AA, Catta-Preta R, Zdilar I, Louis S, Kaushik G, Mannion BJ, Plajzer-Frick I, Afzal V, Visel A, Pennacchio LA, Dickel DE, Lerch JP, Crawley JN, Zarbalis KS, Silverman JL, Nord AS Nature neuroscience20(8)1062-1073(2017 Aug)
Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B.
Fujita H, Umezuki Y, Imamura K, Ishikawa D, Uchimura S, Nara A, Yoshimori T, Hayashizaki Y, Kawai J, Ishidoh K, Tanaka Y, Himeno M Journal of cell science117(Pt 14)2997-3009(2004 Jun)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Chmp2a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Chmp2a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+ /C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID
OMu38489
Clone ID Related Accession (Same CDS sequence)
XM_006540344.1
, XM_011250690.1
Accession Version
XM_006540344.1 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 753bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2016-06-21
Organism
Mus musculus(house mouse)
Product
charged multivesicular body protein 2a isoform X1
Comment
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Mus musculus Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
1 61 121 181 241 301 361 421 481 541 601 661 721 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGG TGTGAGACTT TGACAGGAAG GCAGGGATAT TTACCAGGAC CCTTACCCAT TCGTAGTCCT GATGAGTTCT TTTTCTTTCC TAGTGATGCT GTTGTGTCCC AGGTCCTGGA TGAGCTGGGA CTGAGCCTCA CAGATGAGCT GTCAAACCTT CCCTCCACTG GAGGCTCACT CAGTGTGGCA GCTGGTGGGA AGAAAGCAGA GGCCACAGCC TCAGCCCTGG CTGATGCTGA TGCAGACCTG GAAGAGAGGC TCAAGAACCT TCGCAGGGAC TGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
XP_006540407.1
CDS 165..917
Translation
Target ORF information:
RefSeq Version XM_006540344.1
Organism Mus musculus(house mouse)
Definition Mus musculus charged multivesicular body protein 2A (Chmp2a), transcript variant X1, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
XM_006540344.1
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGG TGTGAGACTT TGACAGGAAG GCAGGGATAT TTACCAGGAC CCTTACCCAT TCGTAGTCCT GATGAGTTCT TTTTCTTTCC TAGTGATGCT GTTGTGTCCC AGGTCCTGGA TGAGCTGGGA CTGAGCCTCA CAGATGAGCT GTCAAACCTT CCCTCCACTG GAGGCTCACT CAGTGTGGCA GCTGGTGGGA AGAAAGCAGA GGCCACAGCC TCAGCCCTGG CTGATGCTGA TGCAGACCTG GAAGAGAGGC TCAAGAACCT TCGCAGGGAC TGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OMu38489
Clone ID Related Accession (Same CDS sequence)
XM_006540344.1
, XM_011250690.1
Accession Version
XM_011250690.1 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 753bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2016-06-21
Organism
Mus musculus(house mouse)
Product
charged multivesicular body protein 2a isoform X1
Comment
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Mus musculus Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
1 61 121 181 241 301 361 421 481 541 601 661 721 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGG TGTGAGACTT TGACAGGAAG GCAGGGATAT TTACCAGGAC CCTTACCCAT TCGTAGTCCT GATGAGTTCT TTTTCTTTCC TAGTGATGCT GTTGTGTCCC AGGTCCTGGA TGAGCTGGGA CTGAGCCTCA CAGATGAGCT GTCAAACCTT CCCTCCACTG GAGGCTCACT CAGTGTGGCA GCTGGTGGGA AGAAAGCAGA GGCCACAGCC TCAGCCCTGG CTGATGCTGA TGCAGACCTG GAAGAGAGGC TCAAGAACCT TCGCAGGGAC TGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
XP_011248992.1
CDS 195..947
Translation
Target ORF information:
RefSeq Version XM_011250690.1
Organism Mus musculus(house mouse)
Definition Mus musculus charged multivesicular body protein 2A (Chmp2a), transcript variant X2, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
XM_011250690.1
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGG TGTGAGACTT TGACAGGAAG GCAGGGATAT TTACCAGGAC CCTTACCCAT TCGTAGTCCT GATGAGTTCT TTTTCTTTCC TAGTGATGCT GTTGTGTCCC AGGTCCTGGA TGAGCTGGGA CTGAGCCTCA CAGATGAGCT GTCAAACCTT CCCTCCACTG GAGGCTCACT CAGTGTGGCA GCTGGTGGGA AGAAAGCAGA GGCCACAGCC TCAGCCCTGG CTGATGCTGA TGCAGACCTG GAAGAGAGGC TCAAGAACCT TCGCAGGGAC TGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OMu03216
Clone ID Related Accession (Same CDS sequence)
XM_006540345.2
, NM_001360730.1
, XM_006540345.3
, NM_026885.3
Accession Version
NM_001360730.1 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 669bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-10-23
Organism
Mus musculus(house mouse)
Product
charged multivesicular body protein 2a isoform a
Comment
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC121301.8. On Feb 10, 2018 this sequence version replaced XM_006540345.3.
Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). Variants 1 and 2 both encode the same isoform (a).
Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
##Evidence-Data-START##
Transcript exon combination :: BI413447.1, BU937207.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMN01164134, SAMN01164135 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
1 61 121 181 241 301 361 421 481 541 601 661 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGT GATGCTGTTG TGTCCCAGGT CCTGGATGAG CTGGGACTGA GCCTCACAGA TGAGCTGTCA AACCTTCCCT CCACTGGAGG CTCACTCAGT GTGGCAGCTG GTGGGAAGAA AGCAGAGGCC ACAGCCTCAG CCCTGGCTGA TGCTGATGCA GACCTGGAAG AGAGGCTCAA GAACCTTCGC AGGGACTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_001347659.1
CDS 323..991
Translation
Target ORF information:
RefSeq Version NM_001360730.1
Organism Mus musculus(house mouse)
Definition Mus musculus charged multivesicular body protein 2A (Chmp2a), transcript variant 1, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_001360730.1
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGT GATGCTGTTG TGTCCCAGGT CCTGGATGAG CTGGGACTGA GCCTCACAGA TGAGCTGTCA AACCTTCCCT CCACTGGAGG CTCACTCAGT GTGGCAGCTG GTGGGAAGAA AGCAGAGGCC ACAGCCTCAG CCCTGGCTGA TGCTGATGCA GACCTGGAAG AGAGGCTCAA GAACCTTCGC AGGGACTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OMu03216
Clone ID Related Accession (Same CDS sequence)
XM_006540345.2
, NM_001360730.1
, XM_006540345.3
, NM_026885.3
Accession Version
NM_026885.3 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 669bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-02-22
Organism
Mus musculus(house mouse)
Product
charged multivesicular body protein 2a isoform a
Comment
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY157363.1, AK005267.1 and AC121301.8. On Jul 29, 2009 this sequence version replaced NM_026885.2.
Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same isoform (a).
##Evidence-Data-START##
Transcript exon combination :: DV047492.1, AK005267.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMN00849377, SAMN00849381 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
1 61 121 181 241 301 361 421 481 541 601 661 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGT GATGCTGTTG TGTCCCAGGT CCTGGATGAG CTGGGACTGA GCCTCACAGA TGAGCTGTCA AACCTTCCCT CCACTGGAGG CTCACTCAGT GTGGCAGCTG GTGGGAAGAA AGCAGAGGCC ACAGCCTCAG CCCTGGCTGA TGCTGATGCA GACCTGGAAG AGAGGCTCAA GAACCTTCGC AGGGACTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_081161.1
CDS 190..858
Translation
Target ORF information:
RefSeq Version NM_026885.3
Organism Mus musculus(house mouse)
Definition Mus musculus charged multivesicular body protein 2A (Chmp2a), transcript variant 2, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_026885.3
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGT GATGCTGTTG TGTCCCAGGT CCTGGATGAG CTGGGACTGA GCCTCACAGA TGAGCTGTCA AACCTTCCCT CCACTGGAGG CTCACTCAGT GTGGCAGCTG GTGGGAAGAA AGCAGAGGCC ACAGCCTCAG CCCTGGCTGA TGCTGATGCA GACCTGGAAG AGAGGCTCAA GAACCTTCGC AGGGACTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OMu84018
Clone ID Related Accession (Same CDS sequence)
NM_001360733.1
Accession Version
NM_001360733.1 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 519bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-10-24
Organism
Mus musculus(house mouse)
Product
charged multivesicular body protein 2a isoform c
Comment
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC121301.8.
Transcript Variant: This variant (4) differs in the 5' UTR and uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (c) has the same N- and C-termini but is shorter compared to isoform a.
Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
##Evidence-Data-START##
Transcript exon combination :: CF423548.1, CK382658.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMN00849383 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
1 61 121 181 241 301 361 421 481 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGT GATGCTGTTG TGTCCCAGGT CCTGGATGAG CTGGGACTGA GCCTCACAGA TGAGCTGTCA AACCTTCCCT CCACTGGAGG CTCACTCAGT GTGGCAGCTG GTGGGAAGAA AGCAGAGGCC ACAGCCTCAG CCCTGGCTGA TGCTGATGCA GACCTGGAAG AGAGGCTCAA GAACCTTCGC AGGGACTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_001347662.1
CDS 190..708
Translation
Target ORF information:
RefSeq Version NM_001360733.1
Organism Mus musculus(house mouse)
Definition Mus musculus charged multivesicular body protein 2A (Chmp2a), transcript variant 4, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_001360733.1
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGT GATGCTGTTG TGTCCCAGGT CCTGGATGAG CTGGGACTGA GCCTCACAGA TGAGCTGTCA AACCTTCCCT CCACTGGAGG CTCACTCAGT GTGGCAGCTG GTGGGAAGAA AGCAGAGGCC ACAGCCTCAG CCCTGGCTGA TGCTGATGCA GACCTGGAAG AGAGGCTCAA GAACCTTCGC AGGGACTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OMu84328
Clone ID Related Accession (Same CDS sequence)
NM_001360731.1
Accession Version
NM_001360731.1 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 522bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-02-26
Organism
Mus musculus(house mouse)
Product
charged multivesicular body protein 2a isoform b
Comment
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC121301.8.
Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate splice junction compared to variant 1, that causes a frameshift. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a.
Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
##Evidence-Data-START##
RNAseq introns :: single sample supports all introns SAMN00849377, SAMN01164131 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
1 61 121 181 241 301 361 421 481 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGG TTGATGCTGT TGTGTCCCAG GTCCTGGATG AGCTGGGACT GA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_001347660.1
CDS 190..711
Translation
Target ORF information:
RefSeq Version NM_001360731.1
Organism Mus musculus(house mouse)
Definition Mus musculus charged multivesicular body protein 2A (Chmp2a), transcript variant 3, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_001360731.1
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGG TTGATGCTGT TGTGTCCCAG GTCCTGGATG AGCTGGGACT GA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
1 61 121 181 241 301 361 421 481 541 601 661 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGT GATGCTGTTG TGTCCCAGGT CCTGGATGAG CTGGGACTGA GCCTCACAGA TGAGCTGTCA AACCTTCCCT CCACTGGAGG CTCACTCAGT GTGGCAGCTG GTGGGAAGAA AGCAGAGGCC ACAGCCTCAG CCCTGGCTGA TGCTGATGCA GACCTGGAAG AGAGGCTCAA GAACCTTCGC AGGGACTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
XP_006540408.1
Translation
Target ORF information:
RefSeq Version XM_006540345.2
Organism Mus musculus(House mouse)
Definition Mus musculus charged multivesicular body protein 2A (Chmp2a), transcript variant X3, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
XM_006540345.2
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGT GATGCTGTTG TGTCCCAGGT CCTGGATGAG CTGGGACTGA GCCTCACAGA TGAGCTGTCA AACCTTCCCT CCACTGGAGG CTCACTCAGT GTGGCAGCTG GTGGGAAGAA AGCAGAGGCC ACAGCCTCAG CCCTGGCTGA TGCTGATGCA GACCTGGAAG AGAGGCTCAA GAACCTTCGC AGGGACTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OMu03216
Clone ID Related Accession (Same CDS sequence)
XM_006540345.2
, NM_001360730.1
, XM_006540345.3
, NM_026885.3
Accession Version
XM_006540345.3 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 669bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2016-06-21
Organism
Mus musculus(house mouse)
Product
charged multivesicular body protein 2a isoform X2
Comment
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 22, 2016 this sequence version replaced XM_006540345.2.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Mus musculus Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
1 61 121 181 241 301 361 421 481 541 601 661 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGT GATGCTGTTG TGTCCCAGGT CCTGGATGAG CTGGGACTGA GCCTCACAGA TGAGCTGTCA AACCTTCCCT CCACTGGAGG CTCACTCAGT GTGGCAGCTG GTGGGAAGAA AGCAGAGGCC ACAGCCTCAG CCCTGGCTGA TGCTGATGCA GACCTGGAAG AGAGGCTCAA GAACCTTCGC AGGGACTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
XP_006540408.1
CDS 195..863
Translation
Target ORF information:
RefSeq Version XM_006540345.3
Organism Mus musculus(house mouse)
Definition Mus musculus charged multivesicular body protein 2A (Chmp2a), transcript variant X3, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
XM_006540345.3
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG GCCCTGAACC GAGCCATGAG AGAACTGGAC AGGGAACGAC AGAAACTAGA AACCCAGGAA AAGAAAATCA TTGCGGACAT CAAAAAGATG GCAAAGCAAG GCCAGATGGA TGCTGTTCGA ATCATGGCAA AAGACCTGGT GCGTACCCGG AGATATGTAC GCAAGTTTGT GTTGATGCGG GCCAACATCC AAGCTGTGTC CCTCAAGATA CAGACTCTAA AATCCAACAA CTCAATGGCA CAAGCCATGA AGGGTGTTAC TAAGGCCATG GGCACTATGA ACAGACAGCT GAAATTACCC CAGATCCAGA AGATCATGAT GGAGTTTGAA CGGCAGGCAG AGATCATGGA CATGAAGGAA GAAATGATGA ATGACGCAAT TGATGATGCC ATGGGTGATG AGGAAGATGA AGAGGAGAGT GATGCTGTTG TGTCCCAGGT CCTGGATGAG CTGGGACTGA GCCTCACAGA TGAGCTGTCA AACCTTCCCT CCACTGGAGG CTCACTCAGT GTGGCAGCTG GTGGGAAGAA AGCAGAGGCC ACAGCCTCAG CCCTGGCTGA TGCTGATGCA GACCTGGAAG AGAGGCTCAA GAACCTTCGC AGGGACTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
Germline Chd8 haploinsufficiency alters brain development in mouse.
Nature neuroscience20(8)1062-1073(2017 Aug)
Gompers AL,Su-Feher L,Ellegood J,Copping NA,Riyadh MA,Stradleigh TW,Pride MC,Schaffler MD,Wade AA,Catta-Preta R,Zdilar I,Louis S,Kaushik G,Mannion BJ,Plajzer-Frick I,Afzal V,Visel A,Pennacchio LA,Dickel DE,Lerch JP,Crawley JN,Zarbalis KS,Silverman JL,Nord AS
Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B.
Journal of cell science117(Pt 14)2997-3009(2004 Jun)
Fujita H,Umezuki Y,Imamura K,Ishikawa D,Uchimura S,Nara A,Yoshimori T,Hayashizaki Y,Kawai J,Ishidoh K,Tanaka Y,Himeno M