Gene Symbol | Chmp2a |
Entrez Gene ID | 68953 |
Full Name | charged multivesicular body protein 2A |
Synonyms | 1500016L11Rik |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Chmp2a cDNA ORF clone
gRNAs
Gene Symbol | Chmp2a |
Entrez Gene ID | 68953 |
Full Name | charged multivesicular body protein 2A |
Synonyms | 1500016L11Rik |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006540345.2 | XP_006540408.1 | charged multivesicular body protein 2a isoform X1 |
NM_001360730.1 | NP_001347659.1 | charged multivesicular body protein 2a isoform a |
XM_006540345.3 | XP_006540408.1 | charged multivesicular body protein 2a isoform X2 |
NM_026885.3 | NP_081161.1 | charged multivesicular body protein 2a isoform a |
NM_001360733.1 | NP_001347662.1 | charged multivesicular body protein 2a isoform c |
XM_006540344.1 | XP_006540407.1 | charged multivesicular body protein 2a isoform X1 |
XM_011250690.1 | XP_011248992.1 | charged multivesicular body protein 2a isoform X1 |
NM_001360731.1 | NP_001347660.1 | charged multivesicular body protein 2a isoform b |
Xenopus tropicalis (tropical clawed frog) | chmp2a | NP_001005008.1 |
Homo sapiens (human) | CHMP2A | NP_940818.1 |
Canis lupus familiaris (dog) | CHMP2A | XP_850536.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP001285 | XP_321862.3 |
Caenorhabditis elegans (roundworm) | vps-2 | NP_496717.1 |
Schizosaccharomyces pombe (fission yeast) | did4 | NP_593871.3 |
Oryza sativa (rice) | Os07g0236800 | NP_001059248.1 |
Bos taurus (cattle) | CHMP2A | NP_001029722.1 |
Mus musculus (house mouse) | Chmp2a | NP_081161.1 |
Rattus norvegicus (Norway rat) | Chmp2a | NP_001102376.1 |
Danio rerio (zebrafish) | bc2 | NP_998682.1 |
Neurospora crassa | NCU00435 | XP_956699.1 |
Pan troglodytes (chimpanzee) | CHMP2A | XP_003316813.1 |
CHMP2A | XP_001099219.1 | |
Gallus gallus (chicken) | CHMP2A | NP_001074361.1 |
Drosophila melanogaster (fruit fly) | vps2 | NP_651455.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_05208 | XP_003712753.1 |
Saccharomyces cerevisiae (baker's yeast) | DID4 | NP_012924.2 |
Kluyveromyces lactis | KLLA0B13343g | XP_452125.1 |
Eremothecium gossypii | AGOS_ABR002C | NP_982948.1 |
Arabidopsis thaliana (thale cress) | VPS2.1 | NP_565336.1 |
Germline Chd8 haploinsufficiency alters brain development in mouse.
Gompers AL, Su-Feher L, Ellegood J, Copping NA, Riyadh MA, Stradleigh TW, Pride MC, Schaffler MD, Wade AA, Catta-Preta R, Zdilar I, Louis S, Kaushik G, Mannion BJ, Plajzer-Frick I, Afzal V, Visel A, Pennacchio LA, Dickel DE, Lerch JP, Crawley JN, Zarbalis KS, Silverman JL, Nord AS
Nature neuroscience20(8)1062-1073(2017 Aug)
Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B.
Fujita H, Umezuki Y, Imamura K, Ishikawa D, Uchimura S, Nara A, Yoshimori T, Hayashizaki Y, Kawai J, Ishidoh K, Tanaka Y, Himeno M
Journal of cell science117(Pt 14)2997-3009(2004 Jun)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Chmp2a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Chmp2a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu38489 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540344.1 , XM_011250690.1 | |
Accession Version | XM_006540344.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 753bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | charged multivesicular body protein 2a isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006540407.1 |
CDS | 165..917 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu38489 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540344.1 , XM_011250690.1 | |
Accession Version | XM_011250690.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 753bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | charged multivesicular body protein 2a isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011248992.1 |
CDS | 195..947 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu03216 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540345.2 , NM_001360730.1 , XM_006540345.3 , NM_026885.3 | |
Accession Version | NM_001360730.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 669bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-23 | |
Organism | Mus musculus(house mouse) | |
Product | charged multivesicular body protein 2a isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC121301.8. On Feb 10, 2018 this sequence version replaced XM_006540345.3. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). Variants 1 and 2 both encode the same isoform (a). Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BI413447.1, BU937207.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164134, SAMN01164135 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001347659.1 |
CDS | 323..991 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu03216 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540345.2 , NM_001360730.1 , XM_006540345.3 , NM_026885.3 | |
Accession Version | NM_026885.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 669bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-22 | |
Organism | Mus musculus(house mouse) | |
Product | charged multivesicular body protein 2a isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY157363.1, AK005267.1 and AC121301.8. On Jul 29, 2009 this sequence version replaced NM_026885.2. Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same isoform (a). ##Evidence-Data-START## Transcript exon combination :: DV047492.1, AK005267.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849377, SAMN00849381 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_081161.1 |
CDS | 190..858 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu84018 | |
Clone ID Related Accession (Same CDS sequence) | NM_001360733.1 | |
Accession Version | NM_001360733.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 519bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-24 | |
Organism | Mus musculus(house mouse) | |
Product | charged multivesicular body protein 2a isoform c | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC121301.8. Transcript Variant: This variant (4) differs in the 5' UTR and uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (c) has the same N- and C-termini but is shorter compared to isoform a. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: CF423548.1, CK382658.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849383 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001347662.1 |
CDS | 190..708 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu84328 | |
Clone ID Related Accession (Same CDS sequence) | NM_001360731.1 | |
Accession Version | NM_001360731.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 522bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-26 | |
Organism | Mus musculus(house mouse) | |
Product | charged multivesicular body protein 2a isoform b | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC121301.8. Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate splice junction compared to variant 1, that causes a frameshift. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN00849377, SAMN01164131 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001347660.1 |
CDS | 190..711 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu03216 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540345.2 , NM_001360730.1 , XM_006540345.3 , NM_026885.3 | |
Accession Version | XM_006540345.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 669bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-02-08 | |
Organism | Mus musculus(House mouse) | |
Product | charged multivesicular body protein 2a isoform X1 | |
Comment |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006540408.1 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu03216 | |
Clone ID Related Accession (Same CDS sequence) | XM_006540345.2 , NM_001360730.1 , XM_006540345.3 , NM_026885.3 | |
Accession Version | XM_006540345.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 669bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | charged multivesicular body protein 2a isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000073.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006540345.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006540408.1 |
CDS | 195..863 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGACCTGT TGTTTGGGCG CCGGAAGACG CCAGAGGAAC TACTTCGGCA AAACCAGAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Germline Chd8 haploinsufficiency alters brain development in mouse. |
Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B. |