Gene Symbol | Tatdn3 |
Entrez Gene ID | 68972 |
Full Name | TatD DNase domain containing 3 |
Synonyms | 1500010M24Rik |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Tatdn3 cDNA ORF clone
Gene Symbol | Tatdn3 |
Entrez Gene ID | 68972 |
Full Name | TatD DNase domain containing 3 |
Synonyms | 1500010M24Rik |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006497203.3 | XP_006497266.2 | putative deoxyribonuclease TATDN3 isoform X1 |
NM_001163421.1 | NP_001156893.1 | putative deoxyribonuclease TATDN3 isoform 2 |
NM_001163422.1 | NP_001156894.1 | putative deoxyribonuclease TATDN3 isoform 3 |
NM_026895.1 | NP_081171.1 | putative deoxyribonuclease TATDN3 isoform 1 |
XM_006497204.4 | XP_006497267.1 | putative deoxyribonuclease TATDN3 isoform X1 |
NM_001357166.1 | NP_001344095.1 | putative deoxyribonuclease TATDN3 isoform 4 |
XM_006497204.3 | XP_006497267.1 | putative deoxyribonuclease TATDN3 isoform X2 |
Bos taurus (cattle) | TATDN3 | NP_001073789.1 |
Caenorhabditis elegans (roundworm) | B0432.8 | NP_493691.2 |
Homo sapiens (human) | TATDN3 | NP_001036017.1 |
Pan troglodytes (chimpanzee) | TATDN3 | XP_001170542.1 |
Gallus gallus (chicken) | TATDN3 | XP_419426.4 |
Canis lupus familiaris (dog) | TATDN3 | XP_547404.3 |
Mus musculus (house mouse) | Tatdn3 | NP_081171.1 |
Danio rerio (zebrafish) | LOC571912 | NP_001186951.1 |
Arabidopsis thaliana (thale cress) | AT3G03500 | NP_187000.1 |
Rattus norvegicus (Norway rat) | Tatdn3 | NP_001099457.1 |
Xenopus tropicalis (tropical clawed frog) | tatdn3 | XP_002934746.2 |
High-throughput discovery of novel developmental phenotypes.
Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK, Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L, Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A, Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ, Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA, Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR, Selloum M, Szoke-Kovacs Z, Tamura M, Trainor AG, Tudose I, Wakana S, Warren J, Wendling O, West DB, Wong L, Yoshiki A, , , , , , , , , MacArthur DG, Tocchini-Valentini GP, Gao X, Flicek P, Bradley A, Skarnes WC, Justice MJ, Parkinson HE, Moore M, Wells S, Braun RE, Svenson KL, de Angelis MH, Herault Y, Mohun T, Mallon AM, Henkelman RM, Brown SD, Adams DJ, Lloyd KC, McKerlie C, Beaudet AL, Bu?an M, Murray SA
Nature537(7621)508-514(2016 09)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Tatdn3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Tatdn3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu03230 | |
Clone ID Related Accession (Same CDS sequence) | NM_026895.1 | |
Accession Version | NM_026895.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 885bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-22 | |
Organism | Mus musculus(house mouse) | |
Product | putative deoxyribonuclease TATDN3 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC138229.16. On or before Jul 22, 2009 this sequence version replaced XM_909966.3, XM_129661.10. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK156071.1, BU519482.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164139 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGGTTTGG GGTTAGTGGA CTGTCACTGC CATCTCTCCG CCTCGGACTT TGACAACGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_081171.1 |
CDS | 76..960 |
Translation |
Target ORF information:
Target ORF information:
|
NM_026895.1 |
1 | ATGGGTTTGG GGTTAGTGGA CTGTCACTGC CATCTCTCCG CCTCGGACTT TGACAACGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu08998 | |
Clone ID Related Accession (Same CDS sequence) | NM_001163421.1 | |
Accession Version | NM_001163421.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 699bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-22 | |
Organism | Mus musculus(house mouse) | |
Product | putative deoxyribonuclease TATDN3 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC138229.16. Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region that results in a frameshift, compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus, compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC061248.1, CB234480.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849381, SAMN01164138 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGGTTTGG GGTTAGTGGA CTGTCACTGC CATCTCTCCG CCTCGGACTT TGACAACGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001156893.1 |
CDS | 76..774 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001163421.1 |
1 | ATGGGTTTGG GGTTAGTGGA CTGTCACTGC CATCTCTCCG CCTCGGACTT TGACAACGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu08999 | |
Clone ID Related Accession (Same CDS sequence) | NM_001163422.1 | |
Accession Version | NM_001163422.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 570bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-21 | |
Organism | Mus musculus(house mouse) | |
Product | putative deoxyribonuclease TATDN3 isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC138229.16. Transcript Variant: This variant (3) lacks an alternate exon that results in a frameshift, compared to variant 1. The resulting isoform (3) has a shorter and distinct C-terminus, compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK005193.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164139 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGGTTTGG GGTTAGTGGA CTGTCACTGC CATCTCTCCG CCTCGGACTT TGACAACGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001156894.1 |
CDS | 76..645 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001163422.1 |
1 | ATGGGTTTGG GGTTAGTGGA CTGTCACTGC CATCTCTCCG CCTCGGACTT TGACAACGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu28986 | |
Clone ID Related Accession (Same CDS sequence) | XM_006497204.4 , XM_006497204.3 | |
Accession Version | XM_006497204.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 705bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | putative deoxyribonuclease TATDN3 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000067.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006497204.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTTCCCT CCCTGGAACG CTCCTGCACG CGTCCGACTG GAAACCCGAT CCGCCGCCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006497267.1 |
CDS | 10..714 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006497204.3 |
1 | ATGCTTCCCT CCCTGGAACG CTCCTGCACG CGTCCGACTG GAAACCCGAT CCGCCGCCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu77277 | |
Clone ID Related Accession (Same CDS sequence) | XM_006497203.3 , NM_001357166.1 | |
Accession Version | NM_001357166.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 882bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-24 | |
Organism | Mus musculus(house mouse) | |
Product | putative deoxyribonuclease TATDN3 isoform 4 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC138229.16. On Oct 21, 2017 this sequence version replaced XM_006497203.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BI328939.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00849374, SAMN00849375 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGGTTTGG GGTTAGTGGA CTGTCACTGC CATCTCTCCG CCTCGGACTT TGACAACGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001344095.1 |
CDS | 54..935 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001357166.1 |
1 | ATGGGTTTGG GGTTAGTGGA CTGTCACTGC CATCTCTCCG CCTCGGACTT TGACAACGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu28986 | |
Clone ID Related Accession (Same CDS sequence) | XM_006497204.4 , XM_006497204.3 | |
Accession Version | XM_006497204.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 705bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | putative deoxyribonuclease TATDN3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000067.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006497204.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTTCCCT CCCTGGAACG CTCCTGCACG CGTCCGACTG GAAACCCGAT CCGCCGCCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006497267.1 |
CDS | 81..785 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006497204.4 |
1 | ATGCTTCCCT CCCTGGAACG CTCCTGCACG CGTCCGACTG GAAACCCGAT CCGCCGCCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu77277 | |
Clone ID Related Accession (Same CDS sequence) | XM_006497203.3 , NM_001357166.1 | |
Accession Version | XM_006497203.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 882bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(House mouse) | |
Product | putative deoxyribonuclease TATDN3 isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000067.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006497203.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGTTTGG GGTTAGTGGA CTGTCACTGC CATCTCTCCG CCTCGGACTT TGACAACGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006497266.2 |
CDS | 86..967 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006497203.3 |
1 | ATGGGTTTGG GGTTAGTGGA CTGTCACTGC CATCTCTCCG CCTCGGACTT TGACAACGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
High-throughput discovery of novel developmental phenotypes. |