Gene Symbol
Sfpq
Entrez Gene ID
71514
Full Name
splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Synonyms
1110004P21Rik,2810416M14Rik,5730453G22Rik,9030402K04Rik,AU021830,D4Ertd314e,Gm12940,PSF,REP1
General protein information
Preferred Namessplicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Namessplicing factor, proline- and glutamine-rich DNA-binding p52/p100 complex, 100 kDa subunit PTB-associated splicing factor polypyrimidine tract-binding protein-associated-splicing factor
Gene Type
protein-coding
Organism
Mus musculus(house mouse)
Genome
Chromosome: 4
Map Location: 4 D2.2|4 61.2 cM
mRNA and Protein(s)
mRNA
Protein
Name
XM_006503406.3
XP_006503469.1
splicing factor, proline- and glutamine-rich isoform X1
NM_023603.3
NP_076092.1
splicing factor, proline- and glutamine-rich
XM_006503406.4
XP_006503469.1
splicing factor, proline- and glutamine-rich isoform X1
Homo sapiens (human)
SFPQ
NP_005057.1
Pan troglodytes (chimpanzee)
SFPQ
NP_001238776.1
Mus musculus (house mouse)
Sfpq
NP_076092.1
Bos taurus (cattle)
SFPQ
NP_001193220.1
Gallus gallus (chicken)
SFPQ
XP_417784.3
Danio rerio (zebrafish)
sfpq
NP_998443.1
Rattus norvegicus (Norway rat)
Sfpq
NP_001020442.1
Canis lupus familiaris (dog)
SFPQ
XP_005629463.1
Related articles in PubMed
Conserved expression of ultra-conserved noncoding RNA in mammalian nervous system.
Zhou J, Wang R, Zhang J, Zhu L, Liu W, Lu S, Chen P, Li H, Yin B, Yuan J, Qiang B, Shu P, Peng X Biochimica et biophysica acta1860(12)1159-1168(2017 Dec)
Post-transcriptional gene silencing mediated by microRNAs is controlled by nucleoplasmic Sfpq.
Bottini S, Hamouda-Tekaya N, Mategot R, Zaragosi LE, Audebert S, Pisano S, Grandjean V, Mauduit C, Benahmed M, Barbry P, Repetto E, Trabucchi M Nature communications8(1)1189(2017 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Sfpq gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Sfpq cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+ /C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID
OMu15377
Clone ID Related Accession (Same CDS sequence)
NM_023603.3
Accession Version
NM_023603.3 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 2100bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-11-15
Organism
Mus musculus(house mouse)
Product
splicing factor, proline- and glutamine-rich
Comment
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CJ067342.1, BC089305.1, AV137948.2 and AW048189.1. On Dec 8, 2009 this sequence version replaced NM_023603.2.
Transcript Variant: This variant (1) encodes the functional protein.
Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: BC089305.1, AY034062.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348]
##Evidence-Data-END##
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 ATGTCTCGGG ATCGGTTCCG GAGTCGCGGT GGCGGCGGTG GAGGCTTTCA CCGGCGTGGA GGAGGTGGCG GCCGCGGCGG CCTTCACGAC TTCCGCTCTC CGCCGCCGGG CATGGGCCTC AACCAGAACC GCGGCCCCAT GGGCCCGGGC CCTGGCGGCC CGAAGCCGCC GCTCCCGCCT CCACCTCCTC ACCAGCAGCA GCAGCAGCCG CCGCCGCAGC AGCCTCCGCC GCAGCAGCCG CCGCCGCACC AGCAGCCGCC GCCGCACCAG CCGCCCCATC AACAGCCCCC GCCTCCGCCG CAGGAATCCA AGCCCGTCGT CCCCCAAGGC CCCGGCTCGG CGCCGGGGGT GAGCAGTGCG CCTCCGCCGG CGGTCTCGGC TCCGCCCGCC AACCCCCCGA CCACCGGCGC CCCTCCGGGC CCTGGTCCAA CCCCGACTCC GCCGCCCGCC GTCCCCTCCA CCGCCCCCGG ACCGCCTCCC CCATCGACGC CGAGCAGCGG AGTCTCGACC ACCCCTCCAC AGACCGGCGG CCCTCCGCCA CCGCCCGCCG GGGGCGCCGG GCCGGGGCCT AAGCCGGGGC CAGGCCCTGG CGGTCCAAAA GGCGGCAAGA TGCCCGGTGG GCCTAAGCCT GGAGGTGGCC CGGGCATGGG CGCTCCTGGT GGCCACCCGA AGCCACCACA CCGAGGTGGC GGCGAGCCCC GTGGGGGCCG GCAGCATCAT GCGCCCTACC ACCAGCAGCA CCACCAGGGG CCCCCTCCCG GCGGACCGGG ACCGCGCACG GAGGAGAAGA TCTCCGACTC GGAGGGATTT AAAGCCAACT TGTCTCTCTT GCGGAGGCCT GGAGAAAAAA CTTACACACA GCGCTGTCGG TTGTTTGTGG GGAATCTACC TGCTGATATC ACAGAGGATG AATTCAAAAG ACTGTTTGCT AAATACGGAG AACCCGGAGA AGTTTTTATC AACAAAGGCA AAGGGTTCGG GTTCATTAAG CTTGAATCTA GAGCCTTGGC TGAAATCGCC AAAGCTGAGC TTGATGATAC TCCCATGAGA GGTAGACAGC TTCGGGTTCG ATTTGCCACA CACGCTGCAG CCCTGTCTGT TCGAAATCTC TCTCCTTATG TTTCCAACGA ACTTTTGGAA GAGGCCTTTA GCCAGTTTGG TCCTATTGAA AGGGCTGTTG TAATTGTGGA TGATCGCGGA AGATCTACAG GGAAAGGCAT TGTTGAGTTT GCTTCCAAGC CAGCAGCAAG AAAAGCATTT GAAAGATGCA GTGAAGGTGT TTTCCTACTG ACAACGACTC CTCGCCCAGT CATTGTGGAA CCACTTGAAC AGTTAGATGA CGAAGATGGT CTTCCTGAAA AGCTGGCCCA GAAGAATCCA ATGTATCAAA AGGAGAGAGA AACACCACCT CGTTTTGCTC AGCATGGCAC ATTTGAGTAT GAATATTCTC AACGATGGAA GTCCTTGGAT GAAATGGAAA AACAGCAAAG GGAACAAGTT GAAAAAAACA TGAAGGATGC TAAAGACAAA TTGGAAAGTG AAATGGAAGA TGCTTACCAT GAACACCAAG CAAATCTTTT GCGCCAAGAT CTGATGAGAC GCCAGGAAGA ATTAAGGCGC ATGGAGGAAC TTCACAGTCA AGAAATGCAG AAACGTAAAG AAATGCAGTT GAGGCAAGAG GAGGAACGGC GTAGACGAGA GGAAGAGATG ATGATTCGCC AACGTGAGAT GGAAGAACAA ATGAGACGCC AACGAGAAGA AAGTTACAGC AGGATGGGCT ACATGGATCC AAGAGAAAGA GACATGAGAA TGGGTGGTGG TGGAACAATG AACATGGGAG ATCCCTATGG TTCAGGAGGC CAGAAATTTC CACCACTAGG TGGTGGTGGT GGCATAGGTT ATGAAGCTAA TCCTGGAGTT CCACCAGCAA CCATGAGTGG TTCCATGATG GGAAGCGACA TGCGTACTGA GCGCTTTGGG CAGGGAGGTG CGGGTCCTGT GGGTGGACAG GGTCCTAGAG GAATGGGGCC TGGAACTCCA GCAGGATATG GTAGAGGGAG AGAAGAGTAT GAAGGGCCAA ATAAAAAACC CCGATTTTAG
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_076092.1
CDS 117..2216
Translation
Target ORF information:
RefSeq Version NM_023603.3
Organism Mus musculus(house mouse)
Definition Mus musculus splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) (Sfpq), transcript variant 1, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_023603.3
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 ATGTCTCGGG ATCGGTTCCG GAGTCGCGGT GGCGGCGGTG GAGGCTTTCA CCGGCGTGGA GGAGGTGGCG GCCGCGGCGG CCTTCACGAC TTCCGCTCTC CGCCGCCGGG CATGGGCCTC AACCAGAACC GCGGCCCCAT GGGCCCGGGC CCTGGCGGCC CGAAGCCGCC GCTCCCGCCT CCACCTCCTC ACCAGCAGCA GCAGCAGCCG CCGCCGCAGC AGCCTCCGCC GCAGCAGCCG CCGCCGCACC AGCAGCCGCC GCCGCACCAG CCGCCCCATC AACAGCCCCC GCCTCCGCCG CAGGAATCCA AGCCCGTCGT CCCCCAAGGC CCCGGCTCGG CGCCGGGGGT GAGCAGTGCG CCTCCGCCGG CGGTCTCGGC TCCGCCCGCC AACCCCCCGA CCACCGGCGC CCCTCCGGGC CCTGGTCCAA CCCCGACTCC GCCGCCCGCC GTCCCCTCCA CCGCCCCCGG ACCGCCTCCC CCATCGACGC CGAGCAGCGG AGTCTCGACC ACCCCTCCAC AGACCGGCGG CCCTCCGCCA CCGCCCGCCG GGGGCGCCGG GCCGGGGCCT AAGCCGGGGC CAGGCCCTGG CGGTCCAAAA GGCGGCAAGA TGCCCGGTGG GCCTAAGCCT GGAGGTGGCC CGGGCATGGG CGCTCCTGGT GGCCACCCGA AGCCACCACA CCGAGGTGGC GGCGAGCCCC GTGGGGGCCG GCAGCATCAT GCGCCCTACC ACCAGCAGCA CCACCAGGGG CCCCCTCCCG GCGGACCGGG ACCGCGCACG GAGGAGAAGA TCTCCGACTC GGAGGGATTT AAAGCCAACT TGTCTCTCTT GCGGAGGCCT GGAGAAAAAA CTTACACACA GCGCTGTCGG TTGTTTGTGG GGAATCTACC TGCTGATATC ACAGAGGATG AATTCAAAAG ACTGTTTGCT AAATACGGAG AACCCGGAGA AGTTTTTATC AACAAAGGCA AAGGGTTCGG GTTCATTAAG CTTGAATCTA GAGCCTTGGC TGAAATCGCC AAAGCTGAGC TTGATGATAC TCCCATGAGA GGTAGACAGC TTCGGGTTCG ATTTGCCACA CACGCTGCAG CCCTGTCTGT TCGAAATCTC TCTCCTTATG TTTCCAACGA ACTTTTGGAA GAGGCCTTTA GCCAGTTTGG TCCTATTGAA AGGGCTGTTG TAATTGTGGA TGATCGCGGA AGATCTACAG GGAAAGGCAT TGTTGAGTTT GCTTCCAAGC CAGCAGCAAG AAAAGCATTT GAAAGATGCA GTGAAGGTGT TTTCCTACTG ACAACGACTC CTCGCCCAGT CATTGTGGAA CCACTTGAAC AGTTAGATGA CGAAGATGGT CTTCCTGAAA AGCTGGCCCA GAAGAATCCA ATGTATCAAA AGGAGAGAGA AACACCACCT CGTTTTGCTC AGCATGGCAC ATTTGAGTAT GAATATTCTC AACGATGGAA GTCCTTGGAT GAAATGGAAA AACAGCAAAG GGAACAAGTT GAAAAAAACA TGAAGGATGC TAAAGACAAA TTGGAAAGTG AAATGGAAGA TGCTTACCAT GAACACCAAG CAAATCTTTT GCGCCAAGAT CTGATGAGAC GCCAGGAAGA ATTAAGGCGC ATGGAGGAAC TTCACAGTCA AGAAATGCAG AAACGTAAAG AAATGCAGTT GAGGCAAGAG GAGGAACGGC GTAGACGAGA GGAAGAGATG ATGATTCGCC AACGTGAGAT GGAAGAACAA ATGAGACGCC AACGAGAAGA AAGTTACAGC AGGATGGGCT ACATGGATCC AAGAGAAAGA GACATGAGAA TGGGTGGTGG TGGAACAATG AACATGGGAG ATCCCTATGG TTCAGGAGGC CAGAAATTTC CACCACTAGG TGGTGGTGGT GGCATAGGTT ATGAAGCTAA TCCTGGAGTT CCACCAGCAA CCATGAGTGG TTCCATGATG GGAAGCGACA TGCGTACTGA GCGCTTTGGG CAGGGAGGTG CGGGTCCTGT GGGTGGACAG GGTCCTAGAG GAATGGGGCC TGGAACTCCA GCAGGATATG GTAGAGGGAG AGAAGAGTAT GAAGGGCCAA ATAAAAAACC CCGATTTTAG
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OMu33820
Clone ID Related Accession (Same CDS sequence)
XM_006503406.3
, XM_006503406.4
Accession Version
XM_006503406.4 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 2253bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-08-07
Organism
Mus musculus(house mouse)
Product
splicing factor, proline- and glutamine-rich isoform X1
Comment
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
On Aug 8, 2019 this sequence version replaced XM_006503406.3.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Mus musculus Annotation Release 108
Annotation Version :: 108
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 8.2
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 ATGGAAATCC CAGCCCTCCC TACCTCCCGC CTCTCACTAG GGAGCCAATT GGAAAAACTT AGGTTTCATC ATCAAGTACT GTACTTGCTA TTGGCTGTCC GAGCTGTCAA TCTAGGGAAG GCGGGCCAGG CCGAACTGTC CTATTTAAGA AGAGGACAAA GGCGGCGCGC AGCTTGTGTC GTCCGCCATT TTGTGCTCAG CAAGGTGGCA ACCACGTTCC CTGAGCGACT TCTCCGCTTC TGCCTCGACC GCCCCTTGAC TACAGCTATG TCTCGGGATC GGTTCCGGAG TCGCGGTGGC GGCGGTGGAG GCTTTCACCG GCGTGGAGGA GGTGGCGGCC GCGGCGGCCT TCACGACTTC CGCTCTCCGC CGCCGGGCAT GGGCCTCAAC CAGAACCGCG GCCCCATGGG CCCGGGCCCT GGCGGCCCGA AGCCGCCGCT CCCGCCTCCA CCTCCTCACC AGCAGCAGCA GCAGCCGCCG CCGCAGCAGC CTCCGCCGCA GCAGCCGCCG CCGCACCAGC AGCCGCCGCC GCACCAGCCG CCCCATCAAC AGCCCCCGCC TCCGCCGCAG GAATCCAAGC CCGTCGTCCC CCAAGGCCCC GGCTCGGCGC CGGGGGTGAG CAGTGCGCCT CCGCCGGCGG TCTCGGCTCC GCCCGCCAAC CCCCCGACCA CCGGCGCCCC TCCGGGCCCT GGTCCAACCC CGACTCCGCC GCCCGCCGTC CCCTCCACCG CCCCCGGACC GCCTCCCCCA TCGACGCCGA GCAGCGGAGT CTCGACCACC CCTCCACAGA CCGGCGGCCC TCCGCCACCG CCCGCCGGGG GCGCCGGGCC GGGGCCTAAG CCGGGGCCAG GCCCTGGCGG TCCAAAAGGC GGCAAGATGC CCGGTGGGCC TAAGCCTGGA GGTGGCCCGG GCATGGGCGC TCCTGGTGGC CACCCGAAGC CACCACACCG AGGTGGCGGC GAGCCCCGTG GGGGCCGGCA GCATCATGCG CCCTACCACC AGCAGCACCA CCAGGGGCCC CCTCCCGGCG GACCGGGACC GCGCACGGAG GAGAAGATCT CCGACTCGGA GGGATTTAAA GCCAACTTGT CTCTCTTGCG GAGGCCTGGA GAAAAAACTT ACACACAGCG CTGTCGGTTG TTTGTGGGGA ATCTACCTGC TGATATCACA GAGGATGAAT TCAAAAGACT GTTTGCTAAA TACGGAGAAC CCGGAGAAGT TTTTATCAAC AAAGGCAAAG GGTTCGGGTT CATTAAGCTT GAATCTAGAG CCTTGGCTGA AATCGCCAAA GCTGAGCTTG ATGATACTCC CATGAGAGGT AGACAGCTTC GGGTTCGATT TGCCACACAC GCTGCAGCCC TGTCTGTTCG AAATCTCTCT CCTTATGTTT CCAACGAACT TTTGGAAGAG GCCTTTAGCC AGTTTGGTCC TATTGAAAGG GCTGTTGTAA TTGTGGATGA TCGCGGAAGA TCTACAGGGA AAGGCATTGT TGAGTTTGCT TCCAAGCCAG CAGCAAGAAA AGCATTTGAA AGATGCAGTG AAGGTGTTTT CCTACTGACA ACGACTCCTC GCCCAGTCAT TGTGGAACCA CTTGAACAGT TAGATGACGA AGATGGTCTT CCTGAAAAGC TGGCCCAGAA GAATCCAATG TATCAAAAGG AGAGAGAAAC ACCACCTCGT TTTGCTCAGC ATGGCACATT TGAGTATGAA TATTCTCAAC GATGGAAGTC CTTGGATGAA ATGGAAAAAC AGCAAAGGGA ACAAGTTGAA AAAAACATGA AGGATGCTAA AGACAAATTG GAAAGTGAAA TGGAAGATGC TTACCATGAA CACCAAGCAA ATCTTTTGCG CCAAGATCTG ATGAGACGCC AGGAAGAATT AAGGCGCATG GAGGAACTTC ACAGTCAAGA AATGCAGAAA CGTAAAGAAA TGCAGTTGAG GCAAGAGGAG GAACGGCGTA GACGAGAGGA AGAGATGATG ATTCGCCAAC GTGAGATGGA AGAACAAATG AGACGCCAAC GAGAAGAAAG TTACAGCAGG ATGGGCTACA TGGATCCAAG AGAAAGAGAC ATGAGAATGG GTGGTGGTGG AACAATGAAC ATGGGAGATC CCTATGGTTC AGGAGGCCAG AAATTTCCAC CACTAGGTGG TGGTGGTGGC ATAGGTTATG AAGCTAATCC TGGAGTTCCA CCAGCAACCA TGAGTGGTTC CATGATGGGA AGCGACATGG TAAGAATGAT TGATGTTGGC TGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
XP_006503469.1
CDS 435..2687
Translation
Target ORF information:
RefSeq Version XM_006503406.4
Organism Mus musculus(house mouse)
Definition Mus musculus splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) (Sfpq), transcript variant X4, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
XM_006503406.4
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 ATGGAAATCC CAGCCCTCCC TACCTCCCGC CTCTCACTAG GGAGCCAATT GGAAAAACTT AGGTTTCATC ATCAAGTACT GTACTTGCTA TTGGCTGTCC GAGCTGTCAA TCTAGGGAAG GCGGGCCAGG CCGAACTGTC CTATTTAAGA AGAGGACAAA GGCGGCGCGC AGCTTGTGTC GTCCGCCATT TTGTGCTCAG CAAGGTGGCA ACCACGTTCC CTGAGCGACT TCTCCGCTTC TGCCTCGACC GCCCCTTGAC TACAGCTATG TCTCGGGATC GGTTCCGGAG TCGCGGTGGC GGCGGTGGAG GCTTTCACCG GCGTGGAGGA GGTGGCGGCC GCGGCGGCCT TCACGACTTC CGCTCTCCGC CGCCGGGCAT GGGCCTCAAC CAGAACCGCG GCCCCATGGG CCCGGGCCCT GGCGGCCCGA AGCCGCCGCT CCCGCCTCCA CCTCCTCACC AGCAGCAGCA GCAGCCGCCG CCGCAGCAGC CTCCGCCGCA GCAGCCGCCG CCGCACCAGC AGCCGCCGCC GCACCAGCCG CCCCATCAAC AGCCCCCGCC TCCGCCGCAG GAATCCAAGC CCGTCGTCCC CCAAGGCCCC GGCTCGGCGC CGGGGGTGAG CAGTGCGCCT CCGCCGGCGG TCTCGGCTCC GCCCGCCAAC CCCCCGACCA CCGGCGCCCC TCCGGGCCCT GGTCCAACCC CGACTCCGCC GCCCGCCGTC CCCTCCACCG CCCCCGGACC GCCTCCCCCA TCGACGCCGA GCAGCGGAGT CTCGACCACC CCTCCACAGA CCGGCGGCCC TCCGCCACCG CCCGCCGGGG GCGCCGGGCC GGGGCCTAAG CCGGGGCCAG GCCCTGGCGG TCCAAAAGGC GGCAAGATGC CCGGTGGGCC TAAGCCTGGA GGTGGCCCGG GCATGGGCGC TCCTGGTGGC CACCCGAAGC CACCACACCG AGGTGGCGGC GAGCCCCGTG GGGGCCGGCA GCATCATGCG CCCTACCACC AGCAGCACCA CCAGGGGCCC CCTCCCGGCG GACCGGGACC GCGCACGGAG GAGAAGATCT CCGACTCGGA GGGATTTAAA GCCAACTTGT CTCTCTTGCG GAGGCCTGGA GAAAAAACTT ACACACAGCG CTGTCGGTTG TTTGTGGGGA ATCTACCTGC TGATATCACA GAGGATGAAT TCAAAAGACT GTTTGCTAAA TACGGAGAAC CCGGAGAAGT TTTTATCAAC AAAGGCAAAG GGTTCGGGTT CATTAAGCTT GAATCTAGAG CCTTGGCTGA AATCGCCAAA GCTGAGCTTG ATGATACTCC CATGAGAGGT AGACAGCTTC GGGTTCGATT TGCCACACAC GCTGCAGCCC TGTCTGTTCG AAATCTCTCT CCTTATGTTT CCAACGAACT TTTGGAAGAG GCCTTTAGCC AGTTTGGTCC TATTGAAAGG GCTGTTGTAA TTGTGGATGA TCGCGGAAGA TCTACAGGGA AAGGCATTGT TGAGTTTGCT TCCAAGCCAG CAGCAAGAAA AGCATTTGAA AGATGCAGTG AAGGTGTTTT CCTACTGACA ACGACTCCTC GCCCAGTCAT TGTGGAACCA CTTGAACAGT TAGATGACGA AGATGGTCTT CCTGAAAAGC TGGCCCAGAA GAATCCAATG TATCAAAAGG AGAGAGAAAC ACCACCTCGT TTTGCTCAGC ATGGCACATT TGAGTATGAA TATTCTCAAC GATGGAAGTC CTTGGATGAA ATGGAAAAAC AGCAAAGGGA ACAAGTTGAA AAAAACATGA AGGATGCTAA AGACAAATTG GAAAGTGAAA TGGAAGATGC TTACCATGAA CACCAAGCAA ATCTTTTGCG CCAAGATCTG ATGAGACGCC AGGAAGAATT AAGGCGCATG GAGGAACTTC ACAGTCAAGA AATGCAGAAA CGTAAAGAAA TGCAGTTGAG GCAAGAGGAG GAACGGCGTA GACGAGAGGA AGAGATGATG ATTCGCCAAC GTGAGATGGA AGAACAAATG AGACGCCAAC GAGAAGAAAG TTACAGCAGG ATGGGCTACA TGGATCCAAG AGAAAGAGAC ATGAGAATGG GTGGTGGTGG AACAATGAAC ATGGGAGATC CCTATGGTTC AGGAGGCCAG AAATTTCCAC CACTAGGTGG TGGTGGTGGC ATAGGTTATG AAGCTAATCC TGGAGTTCCA CCAGCAACCA TGAGTGGTTC CATGATGGGA AGCGACATGG TAAGAATGAT TGATGTTGGC TGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OMu33820
Clone ID Related Accession (Same CDS sequence)
XM_006503406.3
, XM_006503406.4
Accession Version
XM_006503406.3
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 2253bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2016-06-21
Organism
Mus musculus(house mouse)
Product
splicing factor, proline- and glutamine-rich isoform X1
Comment
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 22, 2016 this sequence version replaced XM_006503406.2.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Mus musculus Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 ATGGAAATCC CAGCCCTCCC TACCTCCCGC CTCTCACTAG GGAGCCAATT GGAAAAACTT AGGTTTCATC ATCAAGTACT GTACTTGCTA TTGGCTGTCC GAGCTGTCAA TCTAGGGAAG GCGGGCCAGG CCGAACTGTC CTATTTAAGA AGAGGACAAA GGCGGCGCGC AGCTTGTGTC GTCCGCCATT TTGTGCTCAG CAAGGTGGCA ACCACGTTCC CTGAGCGACT TCTCCGCTTC TGCCTCGACC GCCCCTTGAC TACAGCTATG TCTCGGGATC GGTTCCGGAG TCGCGGTGGC GGCGGTGGAG GCTTTCACCG GCGTGGAGGA GGTGGCGGCC GCGGCGGCCT TCACGACTTC CGCTCTCCGC CGCCGGGCAT GGGCCTCAAC CAGAACCGCG GCCCCATGGG CCCGGGCCCT GGCGGCCCGA AGCCGCCGCT CCCGCCTCCA CCTCCTCACC AGCAGCAGCA GCAGCCGCCG CCGCAGCAGC CTCCGCCGCA GCAGCCGCCG CCGCACCAGC AGCCGCCGCC GCACCAGCCG CCCCATCAAC AGCCCCCGCC TCCGCCGCAG GAATCCAAGC CCGTCGTCCC CCAAGGCCCC GGCTCGGCGC CGGGGGTGAG CAGTGCGCCT CCGCCGGCGG TCTCGGCTCC GCCCGCCAAC CCCCCGACCA CCGGCGCCCC TCCGGGCCCT GGTCCAACCC CGACTCCGCC GCCCGCCGTC CCCTCCACCG CCCCCGGACC GCCTCCCCCA TCGACGCCGA GCAGCGGAGT CTCGACCACC CCTCCACAGA CCGGCGGCCC TCCGCCACCG CCCGCCGGGG GCGCCGGGCC GGGGCCTAAG CCGGGGCCAG GCCCTGGCGG TCCAAAAGGC GGCAAGATGC CCGGTGGGCC TAAGCCTGGA GGTGGCCCGG GCATGGGCGC TCCTGGTGGC CACCCGAAGC CACCACACCG AGGTGGCGGC GAGCCCCGTG GGGGCCGGCA GCATCATGCG CCCTACCACC AGCAGCACCA CCAGGGGCCC CCTCCCGGCG GACCGGGACC GCGCACGGAG GAGAAGATCT CCGACTCGGA GGGATTTAAA GCCAACTTGT CTCTCTTGCG GAGGCCTGGA GAAAAAACTT ACACACAGCG CTGTCGGTTG TTTGTGGGGA ATCTACCTGC TGATATCACA GAGGATGAAT TCAAAAGACT GTTTGCTAAA TACGGAGAAC CCGGAGAAGT TTTTATCAAC AAAGGCAAAG GGTTCGGGTT CATTAAGCTT GAATCTAGAG CCTTGGCTGA AATCGCCAAA GCTGAGCTTG ATGATACTCC CATGAGAGGT AGACAGCTTC GGGTTCGATT TGCCACACAC GCTGCAGCCC TGTCTGTTCG AAATCTCTCT CCTTATGTTT CCAACGAACT TTTGGAAGAG GCCTTTAGCC AGTTTGGTCC TATTGAAAGG GCTGTTGTAA TTGTGGATGA TCGCGGAAGA TCTACAGGGA AAGGCATTGT TGAGTTTGCT TCCAAGCCAG CAGCAAGAAA AGCATTTGAA AGATGCAGTG AAGGTGTTTT CCTACTGACA ACGACTCCTC GCCCAGTCAT TGTGGAACCA CTTGAACAGT TAGATGACGA AGATGGTCTT CCTGAAAAGC TGGCCCAGAA GAATCCAATG TATCAAAAGG AGAGAGAAAC ACCACCTCGT TTTGCTCAGC ATGGCACATT TGAGTATGAA TATTCTCAAC GATGGAAGTC CTTGGATGAA ATGGAAAAAC AGCAAAGGGA ACAAGTTGAA AAAAACATGA AGGATGCTAA AGACAAATTG GAAAGTGAAA TGGAAGATGC TTACCATGAA CACCAAGCAA ATCTTTTGCG CCAAGATCTG ATGAGACGCC AGGAAGAATT AAGGCGCATG GAGGAACTTC ACAGTCAAGA AATGCAGAAA CGTAAAGAAA TGCAGTTGAG GCAAGAGGAG GAACGGCGTA GACGAGAGGA AGAGATGATG ATTCGCCAAC GTGAGATGGA AGAACAAATG AGACGCCAAC GAGAAGAAAG TTACAGCAGG ATGGGCTACA TGGATCCAAG AGAAAGAGAC ATGAGAATGG GTGGTGGTGG AACAATGAAC ATGGGAGATC CCTATGGTTC AGGAGGCCAG AAATTTCCAC CACTAGGTGG TGGTGGTGGC ATAGGTTATG AAGCTAATCC TGGAGTTCCA CCAGCAACCA TGAGTGGTTC CATGATGGGA AGCGACATGG TAAGAATGAT TGATGTTGGC TGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
XP_006503469.1
CDS 591..2843
Translation
Target ORF information:
RefSeq Version XM_006503406.3
Organism Mus musculus(house mouse)
Definition Mus musculus splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) (Sfpq), transcript variant X4, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
XM_006503406.3
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 ATGGAAATCC CAGCCCTCCC TACCTCCCGC CTCTCACTAG GGAGCCAATT GGAAAAACTT AGGTTTCATC ATCAAGTACT GTACTTGCTA TTGGCTGTCC GAGCTGTCAA TCTAGGGAAG GCGGGCCAGG CCGAACTGTC CTATTTAAGA AGAGGACAAA GGCGGCGCGC AGCTTGTGTC GTCCGCCATT TTGTGCTCAG CAAGGTGGCA ACCACGTTCC CTGAGCGACT TCTCCGCTTC TGCCTCGACC GCCCCTTGAC TACAGCTATG TCTCGGGATC GGTTCCGGAG TCGCGGTGGC GGCGGTGGAG GCTTTCACCG GCGTGGAGGA GGTGGCGGCC GCGGCGGCCT TCACGACTTC CGCTCTCCGC CGCCGGGCAT GGGCCTCAAC CAGAACCGCG GCCCCATGGG CCCGGGCCCT GGCGGCCCGA AGCCGCCGCT CCCGCCTCCA CCTCCTCACC AGCAGCAGCA GCAGCCGCCG CCGCAGCAGC CTCCGCCGCA GCAGCCGCCG CCGCACCAGC AGCCGCCGCC GCACCAGCCG CCCCATCAAC AGCCCCCGCC TCCGCCGCAG GAATCCAAGC CCGTCGTCCC CCAAGGCCCC GGCTCGGCGC CGGGGGTGAG CAGTGCGCCT CCGCCGGCGG TCTCGGCTCC GCCCGCCAAC CCCCCGACCA CCGGCGCCCC TCCGGGCCCT GGTCCAACCC CGACTCCGCC GCCCGCCGTC CCCTCCACCG CCCCCGGACC GCCTCCCCCA TCGACGCCGA GCAGCGGAGT CTCGACCACC CCTCCACAGA CCGGCGGCCC TCCGCCACCG CCCGCCGGGG GCGCCGGGCC GGGGCCTAAG CCGGGGCCAG GCCCTGGCGG TCCAAAAGGC GGCAAGATGC CCGGTGGGCC TAAGCCTGGA GGTGGCCCGG GCATGGGCGC TCCTGGTGGC CACCCGAAGC CACCACACCG AGGTGGCGGC GAGCCCCGTG GGGGCCGGCA GCATCATGCG CCCTACCACC AGCAGCACCA CCAGGGGCCC CCTCCCGGCG GACCGGGACC GCGCACGGAG GAGAAGATCT CCGACTCGGA GGGATTTAAA GCCAACTTGT CTCTCTTGCG GAGGCCTGGA GAAAAAACTT ACACACAGCG CTGTCGGTTG TTTGTGGGGA ATCTACCTGC TGATATCACA GAGGATGAAT TCAAAAGACT GTTTGCTAAA TACGGAGAAC CCGGAGAAGT TTTTATCAAC AAAGGCAAAG GGTTCGGGTT CATTAAGCTT GAATCTAGAG CCTTGGCTGA AATCGCCAAA GCTGAGCTTG ATGATACTCC CATGAGAGGT AGACAGCTTC GGGTTCGATT TGCCACACAC GCTGCAGCCC TGTCTGTTCG AAATCTCTCT CCTTATGTTT CCAACGAACT TTTGGAAGAG GCCTTTAGCC AGTTTGGTCC TATTGAAAGG GCTGTTGTAA TTGTGGATGA TCGCGGAAGA TCTACAGGGA AAGGCATTGT TGAGTTTGCT TCCAAGCCAG CAGCAAGAAA AGCATTTGAA AGATGCAGTG AAGGTGTTTT CCTACTGACA ACGACTCCTC GCCCAGTCAT TGTGGAACCA CTTGAACAGT TAGATGACGA AGATGGTCTT CCTGAAAAGC TGGCCCAGAA GAATCCAATG TATCAAAAGG AGAGAGAAAC ACCACCTCGT TTTGCTCAGC ATGGCACATT TGAGTATGAA TATTCTCAAC GATGGAAGTC CTTGGATGAA ATGGAAAAAC AGCAAAGGGA ACAAGTTGAA AAAAACATGA AGGATGCTAA AGACAAATTG GAAAGTGAAA TGGAAGATGC TTACCATGAA CACCAAGCAA ATCTTTTGCG CCAAGATCTG ATGAGACGCC AGGAAGAATT AAGGCGCATG GAGGAACTTC ACAGTCAAGA AATGCAGAAA CGTAAAGAAA TGCAGTTGAG GCAAGAGGAG GAACGGCGTA GACGAGAGGA AGAGATGATG ATTCGCCAAC GTGAGATGGA AGAACAAATG AGACGCCAAC GAGAAGAAAG TTACAGCAGG ATGGGCTACA TGGATCCAAG AGAAAGAGAC ATGAGAATGG GTGGTGGTGG AACAATGAAC ATGGGAGATC CCTATGGTTC AGGAGGCCAG AAATTTCCAC CACTAGGTGG TGGTGGTGGC ATAGGTTATG AAGCTAATCC TGGAGTTCCA CCAGCAACCA TGAGTGGTTC CATGATGGGA AGCGACATGG TAAGAATGAT TGATGTTGGC TGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
Conserved expression of ultra-conserved noncoding RNA in mammalian nervous system.
Biochimica et biophysica acta1860(12)1159-1168(2017 Dec)
Zhou J,Wang R,Zhang J,Zhu L,Liu W,Lu S,Chen P,Li H,Yin B,Yuan J,Qiang B,Shu P,Peng X
Post-transcriptional gene silencing mediated by microRNAs is controlled by nucleoplasmic Sfpq.
Nature communications8(1)1189(2017 Oct)
Bottini S,Hamouda-Tekaya N,Mategot R,Zaragosi LE,Audebert S,Pisano S,Grandjean V,Mauduit C,Benahmed M,Barbry P,Repetto E,Trabucchi M