Gene Symbol | Psd2 |
Entrez Gene ID | 74002 |
Full Name | pleckstrin and Sec7 domain containing 2 |
Synonyms | 6330404E20Rik,AW125584,EFA6C |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Psd2 cDNA ORF clone
Gene Symbol | Psd2 |
Entrez Gene ID | 74002 |
Full Name | pleckstrin and Sec7 domain containing 2 |
Synonyms | 6330404E20Rik,AW125584,EFA6C |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006526297.3 | XP_006526360.1 | PH and SEC7 domain-containing protein 2 isoform X3 |
XM_006526297.4 | XP_006526360.1 | PH and SEC7 domain-containing protein 2 isoform X3 |
XM_017317995.1 | XP_017173484.1 | PH and SEC7 domain-containing protein 2 isoform X1 |
XM_030250620.1 | XP_030106480.1 | PH and SEC7 domain-containing protein 2 isoform X1 |
XM_011247010.1 | XP_011245312.1 | PH and SEC7 domain-containing protein 2 isoform X1 |
XM_011247011.2 | XP_011245313.1 | PH and SEC7 domain-containing protein 2 isoform X2 |
NM_028707.4 | NP_082983.3 | PH and SEC7 domain-containing protein 2 |
XM_011247011.3 | XP_011245313.1 | PH and SEC7 domain-containing protein 2 isoform X2 |
NM_001289602.1 | NP_001276531.1 | PH and SEC7 domain-containing protein 2 isoform 2 |
PSD2 | XP_001085258.1 | |
Gallus gallus (chicken) | PSD2 | XP_004944800.1 |
Pan troglodytes (chimpanzee) | PSD2 | XP_517970.3 |
Homo sapiens (human) | PSD2 | NP_115665.1 |
Canis lupus familiaris (dog) | PSD2 | XP_005617328.1 |
Bos taurus (cattle) | PSD2 | XP_002689261.2 |
Rattus norvegicus (Norway rat) | Psd2 | NP_001100865.1 |
Danio rerio (zebrafish) | LOC557199 | XP_685305.2 |
Mus musculus (house mouse) | Psd2 | NP_082983.3 |
EFA6 activates Arf6 and participates in its targeting to the Flemming body during cytokinesis.
Ueda T, Hanai A, Takei T, Kubo K, Ohgi M, Sakagami H, Takahashi S, Shin HW, Nakayama K
FEBS letters587(11)1617-23(2013 Jun)
Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment.
Georgas K, Rumballe B, Valerius MT, Chiu HS, Thiagarajan RD, Lesieur E, Aronow BJ, Brunskill EW, Combes AN, Tang D, Taylor D, Grimmond SM, Potter SS, McMahon AP, Little MH
Developmental biology332(2)273-86(2009 Aug)
Distinct spatiotemporal expression of EFA6D, a guanine nucleotide exchange factor for ARF6, among the EFA6 family in mouse brain.
Sakagami H, Suzuki H, Kamata A, Owada Y, Fukunaga K, Mayanagi H, Kondo H
Brain research1093(1)1-11(2006 Jun)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Psd2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Psd2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu54828 | |
Clone ID Related Accession (Same CDS sequence) | XM_017317995.1 | |
Accession Version | XM_017317995.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2316bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | PH and SEC7 domain-containing protein 2 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000084.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017173484.1 |
CDS | 755..3070 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017317995.1 |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu54829 | |
Clone ID Related Accession (Same CDS sequence) | XM_006526297.3 , XM_006526297.4 | |
Accession Version | XM_006526297.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1278bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | PH and SEC7 domain-containing protein 2 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000084.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006526297.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006526360.1 |
CDS | 755..2032 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006526297.3 |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu71075 | |
Clone ID Related Accession (Same CDS sequence) | XM_011247011.2 , XM_011247011.3 | |
Accession Version | XM_011247011.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1314bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | PH and SEC7 domain-containing protein 2 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000084.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_011247011.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011245313.1 |
CDS | 755..2068 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011247011.2 |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu54829 | |
Clone ID Related Accession (Same CDS sequence) | XM_006526297.3 , XM_006526297.4 | |
Accession Version | XM_006526297.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1278bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | PH and SEC7 domain-containing protein 2 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000084.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006526297.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006526360.1 |
CDS | 1388..2665 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006526297.4 |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu71075 | |
Clone ID Related Accession (Same CDS sequence) | XM_011247011.2 , XM_011247011.3 | |
Accession Version | XM_011247011.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1314bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | PH and SEC7 domain-containing protein 2 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000084.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011247011.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011245313.1 |
CDS | 1389..2702 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011247011.3 |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu58014 | |
Clone ID Related Accession (Same CDS sequence) | XM_030250620.1 , XM_011247010.1 , NM_028707.4 | |
Accession Version | NM_028707.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2313bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-27 | |
Organism | Mus musculus(house mouse) | |
Product | PH and SEC7 domain-containing protein 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC066026.1 and BC066036.1. On Jan 24, 2014 this sequence version replaced NM_028707.3. Transcript Variant: This variant (1) encodes the longest isoform (1). ##Evidence-Data-START## Transcript exon combination :: BC066026.1, BC065055.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849388, SAMN01164131 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_082983.3 |
CDS | 431..2743 |
Translation |
Target ORF information:
Target ORF information:
|
NM_028707.4 |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu58016 | |
Clone ID Related Accession (Same CDS sequence) | NM_001289602.1 | |
Accession Version | NM_001289602.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2304bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-27 | |
Organism | Mus musculus(house mouse) | |
Product | PH and SEC7 domain-containing protein 2 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC066026.1, BC066036.1 and BC065053.1. Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. This results in a shorter isoform (2), compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: BC066036.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164132 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001276531.1 |
CDS | 434..2737 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001289602.1 |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu58014 | |
Clone ID Related Accession (Same CDS sequence) | XM_030250620.1 , XM_011247010.1 , NM_028707.4 | |
Accession Version | XM_030250620.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2313bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | PH and SEC7 domain-containing protein 2 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000084.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030106480.1 |
CDS | 1383..3695 |
Translation |
Target ORF information:
Target ORF information:
|
XM_030250620.1 |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu58014 | |
Clone ID Related Accession (Same CDS sequence) | XM_030250620.1 , XM_011247010.1 , NM_028707.4 | |
Accession Version | XM_011247010.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2313bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2015-02-08 | |
Organism | Mus musculus(House mouse) | |
Product | PH and SEC7 domain-containing protein 2 isoform X1 | |
Comment |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011245312.1 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011247010.1 |
1 | ATGGATGAAG AGAAGCTCCC ATGTGAGCTG CACAAGGAAG GGAGTGCTAC CCAGGAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
EFA6 activates Arf6 and participates in its targeting to the Flemming body during cytokinesis. |
Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment. |
Distinct spatiotemporal expression of EFA6D, a guanine nucleotide exchange factor for ARF6, among the EFA6 family in mouse brain. |