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LOC4331098 cDNA ORF clone, Oryza sativa Japonica Group(Japanese rice)

Summary

Gene Symbol LOC4331098
Entrez Gene ID 4331098
Full Name protein CUP-SHAPED COTYLEDON 1
Synonyms OJ1116_E04.11,P0016F11.3
Gene Type protein-coding
Organism Oryza sativa Japonica Group(Japanese rice)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_015768292.1 XP_015623778.1 protein CUP-SHAPED COTYLEDON 1
XM_015768292.2 XP_015623778.1 protein CUP-SHAPED COTYLEDON 1

Pathways from BioSystems


Homologies


Oryza sativa (rice) Os02g0810900 NP_001048472.1
Oryza sativa (rice) Os04g0515900 NP_001053312.1
Oryza sativa (rice) Os10g0477600 NP_001064857.1

Gene Ontology

The following LOC4331098 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC4331098 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OOa05718 XM_015768292.2
Latest version!		 Oryza sativa Japonica Group protein CUP-SHAPED COTYLEDON 1 (LOC4331098), mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $174.30
$249.00
View Old Accession Versions >>
OOa05718 XM_015768292.1 Oryza sativa Japonica Group protein CUP-SHAPED COTYLEDON 1 (LOC4331098), mRNA. pcDNA3.1+/C-(K)DYK or customized vector TBD $174.30
$249.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID OOa05718
Clone ID Related Accession (Same CDS sequence) XM_015768292.1 , XM_015768292.2
Accession Version XM_015768292.1 Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 996bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-02-29
Organism Oryza sativa Japonica Group(Japanese rice)
Product protein CUP-SHAPED COTYLEDON 1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015379175.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Oryza sativa Japonica Group Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGGGTTGA GGGACATCGA GCTGACGCTG CCTCCGGGGT TCCGGTTCTA CCCGAGCGAC 
GAGGAGCTTG TCTGCCACTA CCTTCATAAC AAGGTGGTGA ACCAGCATCG CTTCGCCGGA 
GTTGGAGGAG CCGCCGCCGC CGGCGGCGGC ACCATGGTCG AGGTGGACCT CCACACCCAC 
GAGCCGTGGG AGCTACCAGA TGTGGCGAAG CTGAGCACGA ACGAGTGGTA CTTCTTCAGC 
TTCCGCGACC GCAAGTACGC GACGGGGCTC CGCACGAACC GCGCCACCAA GTCCGGCTAC 
TGGAAGGCCA CCGGCAAGGA CCGCGTCATC CACAACCCCA AGCTGCACGC CGCCGCCCAC 
CGCCGCGCCT CCATCGTCGG CATGCGCAAG ACCCTTGTCT TCTACCGCGG CCGCGCCCCC 
AACGGCGTCA AAACCAACTG GGTCATGCAC GAATTTCGCA TGGAAAACCC TCACACCCCT 
CCCAAGGAGG ATTGGGTGTT GTGCAGAGTG TTCTACAAGA AGAAGGCGGA GACGGAGACG 
GAGTCGTCGT ACAGCATGGA GAACGAGCAG GAGGCGGTGA TCGCCATGGC ACGGAGCGCC 
GCGGCCATCA AGGCGGGTGG ATGCTACTCC AACTCCTCCT CGTCTCACGA CCCAGCCGCC 
GCCGGCCATC ACTCGCCCCC GCCATTCCCG GCGTCGCTCG CCGCCTGCAG CAGCAGCCAC 
CACTACAGCA GCCACCCACC GCCGCCTCCC GATCACCACC ACCACCACCA CATGCCCGTC 
ACCGGCGGCG GCGGCGGCTC CCTCAACGAG TTCATCCCCA CCACCAGCAT GGCGCTGTAC 
AGCAGCATCT TCGACTTCAG CCAGCATCTC GACGGCGGCG CCGTGGCGGC GTCGGCGTCG 
GCGGCGGGAT CGAGGGTCGA CGGCGGCGAG CAGTGCGGTC TGATGGAGCT AGGGCTCGAG 
GAGCACTACA ATTACAACGG CCTGATGCCG ATGTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_015623778.1
CDS627..1622
Translation

Target ORF information:

RefSeq Version XM_015768292.1
Organism Oryza sativa Japonica Group(Japanese rice)
Definition Oryza sativa Japonica Group protein CUP-SHAPED COTYLEDON 1 (LOC4331098), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_015768292.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGGGTTGA GGGACATCGA GCTGACGCTG CCTCCGGGGT TCCGGTTCTA CCCGAGCGAC 
GAGGAGCTTG TCTGCCACTA CCTTCATAAC AAGGTGGTGA ACCAGCATCG CTTCGCCGGA 
GTTGGAGGAG CCGCCGCCGC CGGCGGCGGC ACCATGGTCG AGGTGGACCT CCACACCCAC 
GAGCCGTGGG AGCTACCAGA TGTGGCGAAG CTGAGCACGA ACGAGTGGTA CTTCTTCAGC 
TTCCGCGACC GCAAGTACGC GACGGGGCTC CGCACGAACC GCGCCACCAA GTCCGGCTAC 
TGGAAGGCCA CCGGCAAGGA CCGCGTCATC CACAACCCCA AGCTGCACGC CGCCGCCCAC 
CGCCGCGCCT CCATCGTCGG CATGCGCAAG ACCCTTGTCT TCTACCGCGG CCGCGCCCCC 
AACGGCGTCA AAACCAACTG GGTCATGCAC GAATTTCGCA TGGAAAACCC TCACACCCCT 
CCCAAGGAGG ATTGGGTGTT GTGCAGAGTG TTCTACAAGA AGAAGGCGGA GACGGAGACG 
GAGTCGTCGT ACAGCATGGA GAACGAGCAG GAGGCGGTGA TCGCCATGGC ACGGAGCGCC 
GCGGCCATCA AGGCGGGTGG ATGCTACTCC AACTCCTCCT CGTCTCACGA CCCAGCCGCC 
GCCGGCCATC ACTCGCCCCC GCCATTCCCG GCGTCGCTCG CCGCCTGCAG CAGCAGCCAC 
CACTACAGCA GCCACCCACC GCCGCCTCCC GATCACCACC ACCACCACCA CATGCCCGTC 
ACCGGCGGCG GCGGCGGCTC CCTCAACGAG TTCATCCCCA CCACCAGCAT GGCGCTGTAC 
AGCAGCATCT TCGACTTCAG CCAGCATCTC GACGGCGGCG CCGTGGCGGC GTCGGCGTCG 
GCGGCGGGAT CGAGGGTCGA CGGCGGCGAG CAGTGCGGTC TGATGGAGCT AGGGCTCGAG 
GAGCACTACA ATTACAACGG CCTGATGCCG ATGTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OOa05718
Clone ID Related Accession (Same CDS sequence) XM_015768292.1 , XM_015768292.2
Accession Version XM_015768292.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 996bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-08-06
Organism Oryza sativa Japonica Group(Japanese rice)
Product protein CUP-SHAPED COTYLEDON 1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029257.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015768292.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGGGTTGA GGGACATCGA GCTGACGCTG CCTCCGGGGT TCCGGTTCTA CCCGAGCGAC 
GAGGAGCTTG TCTGCCACTA CCTTCATAAC AAGGTGGTGA ACCAGCATCG CTTCGCCGGA 
GTTGGAGGAG CCGCCGCCGC CGGCGGCGGC ACCATGGTCG AGGTGGACCT CCACACCCAC 
GAGCCGTGGG AGCTACCAGA TGTGGCGAAG CTGAGCACGA ACGAGTGGTA CTTCTTCAGC 
TTCCGCGACC GCAAGTACGC GACGGGGCTC CGCACGAACC GCGCCACCAA GTCCGGCTAC 
TGGAAGGCCA CCGGCAAGGA CCGCGTCATC CACAACCCCA AGCTGCACGC CGCCGCCCAC 
CGCCGCGCCT CCATCGTCGG CATGCGCAAG ACCCTTGTCT TCTACCGCGG CCGCGCCCCC 
AACGGCGTCA AAACCAACTG GGTCATGCAC GAATTTCGCA TGGAAAACCC TCACACCCCT 
CCCAAGGAGG ATTGGGTGTT GTGCAGAGTG TTCTACAAGA AGAAGGCGGA GACGGAGACG 
GAGTCGTCGT ACAGCATGGA GAACGAGCAG GAGGCGGTGA TCGCCATGGC ACGGAGCGCC 
GCGGCCATCA AGGCGGGTGG ATGCTACTCC AACTCCTCCT CGTCTCACGA CCCAGCCGCC 
GCCGGCCATC ACTCGCCCCC GCCATTCCCG GCGTCGCTCG CCGCCTGCAG CAGCAGCCAC 
CACTACAGCA GCCACCCACC GCCGCCTCCC GATCACCACC ACCACCACCA CATGCCCGTC 
ACCGGCGGCG GCGGCGGCTC CCTCAACGAG TTCATCCCCA CCACCAGCAT GGCGCTGTAC 
AGCAGCATCT TCGACTTCAG CCAGCATCTC GACGGCGGCG CCGTGGCGGC GTCGGCGTCG 
GCGGCGGGAT CGAGGGTCGA CGGCGGCGAG CAGTGCGGTC TGATGGAGCT AGGGCTCGAG 
GAGCACTACA ATTACAACGG CCTGATGCCG ATGTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_015623778.1
CDS633..1628
Translation

Target ORF information:

RefSeq Version XM_015768292.2
Organism Oryza sativa Japonica Group(Japanese rice)
Definition Oryza sativa Japonica Group protein CUP-SHAPED COTYLEDON 1 (LOC4331098), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_015768292.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
ATGGGGTTGA GGGACATCGA GCTGACGCTG CCTCCGGGGT TCCGGTTCTA CCCGAGCGAC 
GAGGAGCTTG TCTGCCACTA CCTTCATAAC AAGGTGGTGA ACCAGCATCG CTTCGCCGGA 
GTTGGAGGAG CCGCCGCCGC CGGCGGCGGC ACCATGGTCG AGGTGGACCT CCACACCCAC 
GAGCCGTGGG AGCTACCAGA TGTGGCGAAG CTGAGCACGA ACGAGTGGTA CTTCTTCAGC 
TTCCGCGACC GCAAGTACGC GACGGGGCTC CGCACGAACC GCGCCACCAA GTCCGGCTAC 
TGGAAGGCCA CCGGCAAGGA CCGCGTCATC CACAACCCCA AGCTGCACGC CGCCGCCCAC 
CGCCGCGCCT CCATCGTCGG CATGCGCAAG ACCCTTGTCT TCTACCGCGG CCGCGCCCCC 
AACGGCGTCA AAACCAACTG GGTCATGCAC GAATTTCGCA TGGAAAACCC TCACACCCCT 
CCCAAGGAGG ATTGGGTGTT GTGCAGAGTG TTCTACAAGA AGAAGGCGGA GACGGAGACG 
GAGTCGTCGT ACAGCATGGA GAACGAGCAG GAGGCGGTGA TCGCCATGGC ACGGAGCGCC 
GCGGCCATCA AGGCGGGTGG ATGCTACTCC AACTCCTCCT CGTCTCACGA CCCAGCCGCC 
GCCGGCCATC ACTCGCCCCC GCCATTCCCG GCGTCGCTCG CCGCCTGCAG CAGCAGCCAC 
CACTACAGCA GCCACCCACC GCCGCCTCCC GATCACCACC ACCACCACCA CATGCCCGTC 
ACCGGCGGCG GCGGCGGCTC CCTCAACGAG TTCATCCCCA CCACCAGCAT GGCGCTGTAC 
AGCAGCATCT TCGACTTCAG CCAGCATCTC GACGGCGGCG CCGTGGCGGC GTCGGCGTCG 
GCGGCGGGAT CGAGGGTCGA CGGCGGCGAG CAGTGCGGTC TGATGGAGCT AGGGCTCGAG 
GAGCACTACA ATTACAACGG CCTGATGCCG ATGTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed