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LOC4333619 cDNA ORF clone, Oryza sativa Japonica Group(Japanese rice)

Summary

Gene Symbol LOC4333619
Entrez Gene ID 4333619
Full Name TATA-binding protein 2
Synonyms TBP-2,TBP2,TFIID
Gene Type protein-coding
Organism Oryza sativa Japonica Group(Japanese rice)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_015776196.1 XP_015631682.1 TATA-binding protein 2 isoform X2
XM_015776195.1 XP_015631681.1 TATA-binding protein 2 isoform X1
XM_015776196.2 XP_015631682.1 TATA-binding protein 2 isoform X2
XM_026023991.1 XP_025879776.1 TATA-binding protein 2 isoform X3

Pathways from BioSystems


Homologies


Pan troglodytes (chimpanzee) TBPL2 XP_003952543.1
Bos taurus (cattle) TBPL2 XP_002690959.2
Oryza sativa (rice) Os03g0657000 NP_001050812.1
Arabidopsis thaliana (thale cress) TBP2 NP_849812.1
Arabidopsis thaliana (thale cress) TBP1 NP_187953.1
Mus musculus (house mouse) Tbpl2 NP_951014.1
Gallus gallus (chicken) TBPL2 NP_001092323.1
Xenopus tropicalis (tropical clawed frog) tbpl2 NP_001017309.1
Homo sapiens (human) TBPL2 NP_950248.1
Canis lupus familiaris (dog) TBPL2 XP_005623974.1
Rattus norvegicus (Norway rat) Tbpl2 NP_001092831.1
Oryza sativa (rice) Os12g0580300 NP_001067128.1
LOC697371 XP_001088740.1
Danio rerio (zebrafish) tbpl2 NP_999961.1

Gene Ontology

The following LOC4333619 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC4333619 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OOa07849 XM_015776195.1
Latest version!		 Oryza sativa Japonica Group TATA-binding protein 2-like (LOC4333619), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $174.30
$249.00
OOa30566 XM_015776196.2
Latest version!		 Oryza sativa Japonica Group TATA-binding protein 2-like (LOC4333619), transcript variant X2, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 9-11 $104.30
$149.00
OOa46409 XM_026023991.1
Latest version!		 Oryza sativa Japonica Group TATA-binding protein 2-like (LOC4333619), transcript variant X3, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 9-11 $69.30
$99.00
View Old Accession Versions >>
OOa30566 XM_015776196.1 Oryza sativa Japonica Group TATA-binding protein 2 (LOC4333619), transcript variant X2, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 9-11 $104.30
$149.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID OOa07849
Clone ID Related Accession (Same CDS sequence) XM_015776195.1
Accession Version XM_015776195.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 612bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-08-06
Organism Oryza sativa Japonica Group(Japanese rice)
Product TATA-binding protein 2 isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029258.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
ATGGCGGCGG AGGCGGCAGC GGCGCTGGAG GGGAGCGAGC CCGTGGACCT GGCCAAGCAC 
CCCTCCGGCA TCATCCCCAC GCTCCAAAAC ATCGTATCGA CGGTCAATTT GGATTGCAAA 
TTAGACCTCA AAGCTATAGC TTTGCAAGCT CGCAATGCAG AATATAATCC AAAGCGTTTT 
GCTGCGGTTA TCATGAGAAT AAGAGAACCA AAAACTACAG CTCTGATATT TGCATCGGGT 
AAAATGGTCT GTACTGGGGC AAAGAGTGAA CAACAATCCA AGCTTGCAGC AAGAAAGTAC 
GCTCGTATTA TCCAGAAGCT TGGCTTTCCT GCTAAATTCA AGGATTTCAA GATTCAGAAC 
ATTGTTGGCT CTTGTGATGT TAAATTTCCA ATCAGGCTGG AGGGACTTGC ATATTCTCAT 
GGTGCTTTCT CAAGTTATGA GCCAGAACTC TTTCCTGGTC TGATATATCG GATGAAGCAA 
CCAAAGATTG TTCTTCTGAT TTTTGTTTCA GGCAAGATTG TTTTGACCGG AGCAAAGGTG 
AGGGATGAGA CGTATACCGC CTTTGAGAAC ATATACCCTG TGCTAACGGA GTTCAGAAAA 
GTCCAGCAGT GA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_015631681.1
CDS273..884
Translation

Target ORF information:

RefSeq Version XM_015776195.1
Organism Oryza sativa Japonica Group(Japanese rice)
Definition Oryza sativa Japonica Group TATA-binding protein 2-like (LOC4333619), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_015776195.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
ATGGCGGCGG AGGCGGCAGC GGCGCTGGAG GGGAGCGAGC CCGTGGACCT GGCCAAGCAC 
CCCTCCGGCA TCATCCCCAC GCTCCAAAAC ATCGTATCGA CGGTCAATTT GGATTGCAAA 
TTAGACCTCA AAGCTATAGC TTTGCAAGCT CGCAATGCAG AATATAATCC AAAGCGTTTT 
GCTGCGGTTA TCATGAGAAT AAGAGAACCA AAAACTACAG CTCTGATATT TGCATCGGGT 
AAAATGGTCT GTACTGGGGC AAAGAGTGAA CAACAATCCA AGCTTGCAGC AAGAAAGTAC 
GCTCGTATTA TCCAGAAGCT TGGCTTTCCT GCTAAATTCA AGGATTTCAA GATTCAGAAC 
ATTGTTGGCT CTTGTGATGT TAAATTTCCA ATCAGGCTGG AGGGACTTGC ATATTCTCAT 
GGTGCTTTCT CAAGTTATGA GCCAGAACTC TTTCCTGGTC TGATATATCG GATGAAGCAA 
CCAAAGATTG TTCTTCTGAT TTTTGTTTCA GGCAAGATTG TTTTGACCGG AGCAAAGGTG 
AGGGATGAGA CGTATACCGC CTTTGAGAAC ATATACCCTG TGCTAACGGA GTTCAGAAAA 
GTCCAGCAGT GA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OOa30566
Clone ID Related Accession (Same CDS sequence) XM_015776196.1 , XM_015776196.2
Accession Version XM_015776196.1 Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 561bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-02-29
Organism Oryza sativa Japonica Group(Japanese rice)
Product TATA-binding protein 2 isoform X2
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015379176.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Oryza sativa Japonica Group Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
ATGTACATTT GCATGCTGGT GTGCGCTGCT AAAAGAAACA TCGTATCGAC GGTCAATTTG 
GATTGCAAAT TAGACCTCAA AGCTATAGCT TTGCAAGCTC GCAATGCAGA ATATAATCCA 
AAGCGTTTTG CTGCGGTTAT CATGAGAATA AGAGAACCAA AAACTACAGC TCTGATATTT 
GCATCGGGTA AAATGGTCTG TACTGGGGCA AAGAGTGAAC AACAATCCAA GCTTGCAGCA 
AGAAAGTACG CTCGTATTAT CCAGAAGCTT GGCTTTCCTG CTAAATTCAA GGATTTCAAG 
ATTCAGAACA TTGTTGGCTC TTGTGATGTT AAATTTCCAA TCAGGCTGGA GGGACTTGCA 
TATTCTCATG GTGCTTTCTC AAGTTATGAG CCAGAACTCT TTCCTGGTCT GATATATCGG 
ATGAAGCAAC CAAAGATTGT TCTTCTGATT TTTGTTTCAG GCAAGATTGT TTTGACCGGA 
GCAAAGGTGA GGGATGAGAC GTATACCGCC TTTGAGAACA TATACCCTGT GCTAACGGAG 
TTCAGAAAAG TCCAGCAGTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_015631682.1
CDS453..1013
Translation

Target ORF information:

RefSeq Version XM_015776196.1
Organism Oryza sativa Japonica Group(Japanese rice)
Definition Oryza sativa Japonica Group TATA-binding protein 2 (LOC4333619), transcript variant X2, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_015776196.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
ATGTACATTT GCATGCTGGT GTGCGCTGCT AAAAGAAACA TCGTATCGAC GGTCAATTTG 
GATTGCAAAT TAGACCTCAA AGCTATAGCT TTGCAAGCTC GCAATGCAGA ATATAATCCA 
AAGCGTTTTG CTGCGGTTAT CATGAGAATA AGAGAACCAA AAACTACAGC TCTGATATTT 
GCATCGGGTA AAATGGTCTG TACTGGGGCA AAGAGTGAAC AACAATCCAA GCTTGCAGCA 
AGAAAGTACG CTCGTATTAT CCAGAAGCTT GGCTTTCCTG CTAAATTCAA GGATTTCAAG 
ATTCAGAACA TTGTTGGCTC TTGTGATGTT AAATTTCCAA TCAGGCTGGA GGGACTTGCA 
TATTCTCATG GTGCTTTCTC AAGTTATGAG CCAGAACTCT TTCCTGGTCT GATATATCGG 
ATGAAGCAAC CAAAGATTGT TCTTCTGATT TTTGTTTCAG GCAAGATTGT TTTGACCGGA 
GCAAAGGTGA GGGATGAGAC GTATACCGCC TTTGAGAACA TATACCCTGT GCTAACGGAG 
TTCAGAAAAG TCCAGCAGTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OOa30566
Clone ID Related Accession (Same CDS sequence) XM_015776196.1 , XM_015776196.2
Accession Version XM_015776196.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 561bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-08-06
Organism Oryza sativa Japonica Group(Japanese rice)
Product TATA-binding protein 2 isoform X2
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029258.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015776196.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
ATGTACATTT GCATGCTGGT GTGCGCTGCT AAAAGAAACA TCGTATCGAC GGTCAATTTG 
GATTGCAAAT TAGACCTCAA AGCTATAGCT TTGCAAGCTC GCAATGCAGA ATATAATCCA 
AAGCGTTTTG CTGCGGTTAT CATGAGAATA AGAGAACCAA AAACTACAGC TCTGATATTT 
GCATCGGGTA AAATGGTCTG TACTGGGGCA AAGAGTGAAC AACAATCCAA GCTTGCAGCA 
AGAAAGTACG CTCGTATTAT CCAGAAGCTT GGCTTTCCTG CTAAATTCAA GGATTTCAAG 
ATTCAGAACA TTGTTGGCTC TTGTGATGTT AAATTTCCAA TCAGGCTGGA GGGACTTGCA 
TATTCTCATG GTGCTTTCTC AAGTTATGAG CCAGAACTCT TTCCTGGTCT GATATATCGG 
ATGAAGCAAC CAAAGATTGT TCTTCTGATT TTTGTTTCAG GCAAGATTGT TTTGACCGGA 
GCAAAGGTGA GGGATGAGAC GTATACCGCC TTTGAGAACA TATACCCTGT GCTAACGGAG 
TTCAGAAAAG TCCAGCAGTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_015631682.1
CDS294..854
Translation

Target ORF information:

RefSeq Version XM_015776196.2
Organism Oryza sativa Japonica Group(Japanese rice)
Definition Oryza sativa Japonica Group TATA-binding protein 2-like (LOC4333619), transcript variant X2, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_015776196.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
ATGTACATTT GCATGCTGGT GTGCGCTGCT AAAAGAAACA TCGTATCGAC GGTCAATTTG 
GATTGCAAAT TAGACCTCAA AGCTATAGCT TTGCAAGCTC GCAATGCAGA ATATAATCCA 
AAGCGTTTTG CTGCGGTTAT CATGAGAATA AGAGAACCAA AAACTACAGC TCTGATATTT 
GCATCGGGTA AAATGGTCTG TACTGGGGCA AAGAGTGAAC AACAATCCAA GCTTGCAGCA 
AGAAAGTACG CTCGTATTAT CCAGAAGCTT GGCTTTCCTG CTAAATTCAA GGATTTCAAG 
ATTCAGAACA TTGTTGGCTC TTGTGATGTT AAATTTCCAA TCAGGCTGGA GGGACTTGCA 
TATTCTCATG GTGCTTTCTC AAGTTATGAG CCAGAACTCT TTCCTGGTCT GATATATCGG 
ATGAAGCAAC CAAAGATTGT TCTTCTGATT TTTGTTTCAG GCAAGATTGT TTTGACCGGA 
GCAAAGGTGA GGGATGAGAC GTATACCGCC TTTGAGAACA TATACCCTGT GCTAACGGAG 
TTCAGAAAAG TCCAGCAGTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OOa46409
Clone ID Related Accession (Same CDS sequence) XM_026023991.1
Accession Version XM_026023991.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 537bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-08-06
Organism Oryza sativa Japonica Group(Japanese rice)
Product TATA-binding protein 2 isoform X3
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029258.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
ATGATATACA GAAACATCGT ATCGACGGTC AATTTGGATT GCAAATTAGA CCTCAAAGCT 
ATAGCTTTGC AAGCTCGCAA TGCAGAATAT AATCCAAAGC GTTTTGCTGC GGTTATCATG 
AGAATAAGAG AACCAAAAAC TACAGCTCTG ATATTTGCAT CGGGTAAAAT GGTCTGTACT 
GGGGCAAAGA GTGAACAACA ATCCAAGCTT GCAGCAAGAA AGTACGCTCG TATTATCCAG 
AAGCTTGGCT TTCCTGCTAA ATTCAAGGAT TTCAAGATTC AGAACATTGT TGGCTCTTGT 
GATGTTAAAT TTCCAATCAG GCTGGAGGGA CTTGCATATT CTCATGGTGC TTTCTCAAGT 
TATGAGCCAG AACTCTTTCC TGGTCTGATA TATCGGATGA AGCAACCAAA GATTGTTCTT 
CTGATTTTTG TTTCAGGCAA GATTGTTTTG ACCGGAGCAA AGGTGAGGGA TGAGACGTAT 
ACCGCCTTTG AGAACATATA CCCTGTGCTA ACGGAGTTCA GAAAAGTCCA GCAGTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_025879776.1
CDS16..552
Translation

Target ORF information:

RefSeq Version XM_026023991.1
Organism Oryza sativa Japonica Group(Japanese rice)
Definition Oryza sativa Japonica Group TATA-binding protein 2-like (LOC4333619), transcript variant X3, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_026023991.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
ATGATATACA GAAACATCGT ATCGACGGTC AATTTGGATT GCAAATTAGA CCTCAAAGCT 
ATAGCTTTGC AAGCTCGCAA TGCAGAATAT AATCCAAAGC GTTTTGCTGC GGTTATCATG 
AGAATAAGAG AACCAAAAAC TACAGCTCTG ATATTTGCAT CGGGTAAAAT GGTCTGTACT 
GGGGCAAAGA GTGAACAACA ATCCAAGCTT GCAGCAAGAA AGTACGCTCG TATTATCCAG 
AAGCTTGGCT TTCCTGCTAA ATTCAAGGAT TTCAAGATTC AGAACATTGT TGGCTCTTGT 
GATGTTAAAT TTCCAATCAG GCTGGAGGGA CTTGCATATT CTCATGGTGC TTTCTCAAGT 
TATGAGCCAG AACTCTTTCC TGGTCTGATA TATCGGATGA AGCAACCAAA GATTGTTCTT 
CTGATTTTTG TTTCAGGCAA GATTGTTTTG ACCGGAGCAA AGGTGAGGGA TGAGACGTAT 
ACCGCCTTTG AGAACATATA CCCTGTGCTA ACGGAGTTCA GAAAAGTCCA GCAGTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed