mRNA and Protein(s)
| mRNA |
Protein |
Name |
| XM_017590031.1 |
XP_017445520.1 |
calpain small subunit 1 |
|
LOC712561 |
XP_002808235.1 |
| Rattus norvegicus (Norway rat) |
LOC100911363 |
XP_003748884.1 |
| Danio rerio (zebrafish) |
capns1a |
NP_001017899.2 |
| Danio rerio (zebrafish) |
capns1b |
NP_001103176.1 |
| Homo sapiens (human) |
CAPNS1 |
NP_001003962.1 |
| Pan troglodytes (chimpanzee) |
CAPNS1 |
XP_003953505.1 |
| Xenopus tropicalis (tropical clawed frog) |
capns2 |
NP_001016161.1 |
| Canis lupus familiaris (dog) |
CAPNS1 |
XP_853634.1 |
| Mus musculus (house mouse) |
Capns1 |
NP_033925.2 |
| Rattus norvegicus (Norway rat) |
Capns1 |
NP_058814.1 |
| Bos taurus (cattle) |
CAPNS1 |
NP_776686.1 |
| Rattus norvegicus (Norway rat) |
LOC100912380 |
XP_003748875.2 |
Related articles in PubMed
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100912380 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100912380 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID |
ORa13099 |
| Clone ID Related Accession (Same CDS sequence) |
XM_017590031.1
|
| Accession Version |
XM_017590031.1 Latest version! |
Documents for ORF clone product in default vector |
| Sequence Information |
ORF Nucleotide Sequence (Length: 813bp)
Protein sequence
SNP |
| Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
 User Manual |
| Clone information |
Clone Map |
MSDS |
| Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
| ORF Insert Method |
CloneEZ™ Seamless cloning technology |
| Insert Structure |
linear |
| Update Date |
2016-07-25 |
| Organism |
Rattus norvegicus(Norway rat) |
| Product |
calpain small subunit 1 |
| Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) and transcript sequence (U53859.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Rattus norvegicus Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
assembly gap :: added 157 transcript bases to patch genome assembly gap
##RefSeq-Attributes-END##
|
1
61
121
181
241
301
361
421
481
541
601
661
721
781
| ATGTTCTTGG TGAATTCGTT CTTGAAGGGC GGCGGTGGCG GTGGGGGAGG CGGGGGTCTG
GGCGGGGGCC TGGGCAATGT GCTCGGAGGC CTGATCAGCG GAGCTGCTGG AGGCGGCGGC
GGTGGAGGCG GCGGTGGCGG CATGGGACTG GGAGGAGGTG GCGGAGGCGG TGGAACAGCC
ATGCGTATCC TGGGCGGAGT CATTAGCGCC ATCAGCGAGG CTGCTGCGCA GTACAACCCG
GAGCCCCCGC CCCCACGTAG CCATTACTCT AATATTGAGG CCAACGAGAG TGAAGAGGAA
CGTCAGTTCA GGAAACTTTT TGTCCAGCTG GCTGGAGACG ACATGGAGGT CAGCGCTACA
GAACTCATGA ATATCCTCAA CAAGGTCGTG ACCCGACACC CAGATCTGAA AACTGATGGG
TTCGGCATTG ACACTTGTCG GAGCATGGTG GCTGTTATGG ATAGTGACAC CACAGGCAAG
CTGGGCTTTG AGGAGTTCAA GTACCTCTGG AACAACATTA AAAAGTGGCA GGGTATATAC
AAACGCTTTG ATACTGACCG ATCAGGGACC ATTGGTAGCA ATGAACTCCC AGGGGCCTTT
GAGGCAGCAG GATTCCACCT GAATCAGCAT ATCTACAGCA TGATCATCCG CCGCTACTCG
GACGAGACCG GGAACATGGA TTTCGATAAC TTCATCAGCT GCTTGGTCAG GCTGGATGCC
ATGTTCCGTG CTTTCAGATC TCTTGACAAA AATGGCACTG GACAGATCCA AGTGAACATC
CAGGAGTGGT TGCAGCTGAC TATGTATTCC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq |
XP_017445520.1 |
| CDS | 188..1000 |
| Translation | |
Target ORF information:
| RefSeq Version | XM_017590031.1 |
| Organism | Rattus norvegicus(Norway rat) |
| Definition | Rattus norvegicus calpain small subunit 1-like (LOC100912380), mRNA. |
Target ORF information:
| Epitope | DYKDDDDK |
| Bacterial selection | AMPR |
| Mammalian selection | NeoR |
| Vector | pcDNA3.1+/C-(K)DYK |
|
 XM_017590031.1 |
ORF Insert Sequence:
1
61
121
181
241
301
361
421
481
541
601
661
721
781
| ATGTTCTTGG TGAATTCGTT CTTGAAGGGC GGCGGTGGCG GTGGGGGAGG CGGGGGTCTG
GGCGGGGGCC TGGGCAATGT GCTCGGAGGC CTGATCAGCG GAGCTGCTGG AGGCGGCGGC
GGTGGAGGCG GCGGTGGCGG CATGGGACTG GGAGGAGGTG GCGGAGGCGG TGGAACAGCC
ATGCGTATCC TGGGCGGAGT CATTAGCGCC ATCAGCGAGG CTGCTGCGCA GTACAACCCG
GAGCCCCCGC CCCCACGTAG CCATTACTCT AATATTGAGG CCAACGAGAG TGAAGAGGAA
CGTCAGTTCA GGAAACTTTT TGTCCAGCTG GCTGGAGACG ACATGGAGGT CAGCGCTACA
GAACTCATGA ATATCCTCAA CAAGGTCGTG ACCCGACACC CAGATCTGAA AACTGATGGG
TTCGGCATTG ACACTTGTCG GAGCATGGTG GCTGTTATGG ATAGTGACAC CACAGGCAAG
CTGGGCTTTG AGGAGTTCAA GTACCTCTGG AACAACATTA AAAAGTGGCA GGGTATATAC
AAACGCTTTG ATACTGACCG ATCAGGGACC ATTGGTAGCA ATGAACTCCC AGGGGCCTTT
GAGGCAGCAG GATTCCACCT GAATCAGCAT ATCTACAGCA TGATCATCCG CCGCTACTCG
GACGAGACCG GGAACATGGA TTTCGATAAC TTCATCAGCT GCTTGGTCAG GCTGGATGCC
ATGTTCCGTG CTTTCAGATC TCTTGACAAA AATGGCACTG GACAGATCCA AGTGAACATC
CAGGAGTGGT TGCAGCTGAC TATGTATTCC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
