Gene Symbol | Vps53 |
Entrez Gene ID | 287535 |
Full Name | VPS53 GARP complex subunit |
Synonyms | RGD1311391 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Vps53 cDNA ORF clone
gRNAs
Gene Symbol | Vps53 |
Entrez Gene ID | 287535 |
Full Name | VPS53 GARP complex subunit |
Synonyms | RGD1311391 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001105813.1 | NP_001099283.1 | vacuolar protein sorting-associated protein 53 homolog |
XM_006246899.3 | XP_006246961.1 | vacuolar protein sorting-associated protein 53 homolog isoform X1 |
Bos taurus (cattle) | VPS53 | NP_001180097.1 |
Danio rerio (zebrafish) | vps53 | NP_001007459.2 |
Arabidopsis thaliana (thale cress) | AT1G50970 | NP_175510.2 |
Gallus gallus (chicken) | VPS53 | NP_001012824.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP006623 | XP_316653.4 |
Caenorhabditis elegans (roundworm) | vps-53 | NP_001255027.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_01331 | XP_003714256.1 |
Canis lupus familiaris (dog) | VPS53 | XP_548308.2 |
Mus musculus (house mouse) | Vps53 | NP_080940.2 |
Rattus norvegicus (Norway rat) | Vps53 | NP_001099283.1 |
Neurospora crassa | NCU03024 | XP_965410.1 |
Arabidopsis thaliana (thale cress) | HIT1 | NP_564573.3 |
Xenopus tropicalis (tropical clawed frog) | LOC100496110 | XP_002934389.2 |
Pan troglodytes (chimpanzee) | VPS53 | XP_001151796.1 |
Schizosaccharomyces pombe (fission yeast) | vps53 | NP_593341.1 |
Oryza sativa (rice) | Os01g0906200 | NP_001045132.2 |
Homo sapiens (human) | VPS53 | NP_001121631.1 |
Drosophila melanogaster (fruit fly) | CG3338 | NP_608825.2 |
The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles.
Topalidou I, Cattin-Ortol? J, Pappas AL, Cooper K, Merrihew GE, MacCoss MJ, Ailion M
PLoS genetics12(5)e1006074(2016 May)
EARP is a multisubunit tethering complex involved in endocytic recycling.
Schindler C, Chen Y, Pu J, Guo X, Bonifacino JS
Nature cell biology17(5)639-50(2015 May)
Dual roles of the mammalian GARP complex in tethering and SNARE complex assembly at the trans-golgi network.
P?rez-Victoria FJ, Bonifacino JS
Molecular and cellular biology29(19)5251-63(2009 Oct)
Characterization of the human GARP (Golgi associated retrograde protein) complex.
Liewen H, Meinhold-Heerlein I, Oliveira V, Schwarzenbacher R, Luo G, Wadle A, Jung M, Pfreundschuh M, Stenner-Liewen F
Experimental cell research306(1)24-34(2005 May)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Vps53 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Vps53 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa11467 | |
Clone ID Related Accession (Same CDS sequence) | NM_001105813.1 | |
Accession Version | NM_001105813.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2499bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-08 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | vacuolar protein sorting-associated protein 53 homolog | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473948.1. On or before Oct 3, 2007 this sequence version replaced XM_001080583.1, XM_213395.4. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMD00052296, SAMD00052297 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGATGGAGG AGGAGGAACT GGAGTTTGTG GAGGAGCTGG AGGCTGTGCT GCAGCTCACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001099283.1 |
CDS | 132..2630 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGATGGAGG AGGAGGAACT GGAGTTTGTG GAGGAGCTGG AGGCTGTGCT GCAGCTCACG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa33445 | |
Clone ID Related Accession (Same CDS sequence) | XM_006246899.3 | |
Accession Version | XM_006246899.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2130bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | vacuolar protein sorting-associated protein 53 homolog isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005109.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006246899.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTGAAAG AGATCACCCG AGATATTAAG CAGTTAGATC ACGCCAAGCG CCACCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006246961.1 |
CDS | 421..2550 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGTGAAAG AGATCACCCG AGATATTAAG CAGTTAGATC ACGCCAAGCG CCACCTGACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles. |
EARP is a multisubunit tethering complex involved in endocytic recycling. |
Dual roles of the mammalian GARP complex in tethering and SNARE complex assembly at the trans-golgi network. |
Characterization of the human GARP (Golgi associated retrograde protein) complex. |