Gene Symbol | Ppox |
Entrez Gene ID | 289219 |
Full Name | protoporphyrinogen oxidase |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Ppox cDNA ORF clone
Gene Symbol | Ppox |
Entrez Gene ID | 289219 |
Full Name | protoporphyrinogen oxidase |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001105968.1 | NP_001099438.1 | protoporphyrinogen oxidase |
XM_006250241.2 | XP_006250303.1 | protoporphyrinogen oxidase isoform X1 |
XM_006250240.3 | XP_006250302.1 | protoporphyrinogen oxidase isoform X1 |
XM_006250243.1 | XP_006250305.1 | protoporphyrinogen oxidase isoform X2 |
PPOX | XP_001117868.1 | |
Bos taurus (cattle) | PPOX | NP_001179355.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP003704 | XP_313497.2 |
Saccharomyces cerevisiae (baker's yeast) | HEM14 | NP_010930.1 |
Canis lupus familiaris (dog) | PPOX | XP_005640930.1 |
Danio rerio (zebrafish) | ppox | NP_001035068.1 |
Eremothecium gossypii | AGOS_AAR021W | NP_982562.2 |
Magnaporthe oryzae (rice blast fungus) | MGG_09924 | XP_003710024.1 |
Pan troglodytes (chimpanzee) | PPOX | XP_001173380.1 |
Drosophila melanogaster (fruit fly) | Ppox | NP_651278.2 |
Arabidopsis thaliana (thale cress) | PPOX | NP_192078.1 |
Xenopus tropicalis (tropical clawed frog) | ppox | XP_002942478.2 |
Kluyveromyces lactis | KLLA0B11616g | XP_452047.1 |
Homo sapiens (human) | PPOX | NP_000300.1 |
Mus musculus (house mouse) | Ppox | NP_032937.1 |
Rattus norvegicus (Norway rat) | Ppox | NP_001099438.1 |
Schizosaccharomyces pombe (fission yeast) | hem14 | NP_592866.1 |
Neurospora crassa | NCU09113 | XP_958322.2 |
Oryza sativa (rice) | Os01g0286600 | NP_001042777.1 |
Synthesis, delivery and regulation of eukaryotic heme and Fe-S cluster cofactors.
Barupala DP, Dzul SP, Riggs-Gelasco PJ, Stemmler TL
Archives of biochemistry and biophysics59260-75(2016 Feb)
Biosynthesis of heme in mammals.
Ajioka RS, Phillips JD, Kushner JP
Biochimica et biophysica acta1763(7)723-36(2006 Jul)
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria.
Mootha VK, Bunkenborg J, Olsen JV, Hjerrild M, Wisniewski JR, Stahl E, Bolouri MS, Ray HN, Sihag S, Kamal M, Patterson N, Lander ES, Mann M
Cell115(5)629-40(2003 Nov)
A mouse model for South African (R59W) variegate porphyria: construction and initial characterization.
Medlock AE, Meissner PN, Davidson BP, Corrigall AV, Dailey HA
Cellular and molecular biology (Noisy-le-Grand, France)48(1)71-8(2002 Feb)
Variegate porphyria in Western Europe: identification of PPOX gene mutations in 104 families, extent of allelic heterogeneity, and absence of correlation between phenotype and type of mutation.
Whatley SD, Puy H, Morgan RR, Robreau AM, Roberts AG, Nordmann Y, Elder GH, Deybach JC
American journal of human genetics65(4)984-94(1999 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Ppox gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Ppox cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa11750 | |
Clone ID Related Accession (Same CDS sequence) | NM_001105968.1 | |
Accession Version | NM_001105968.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1434bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-10-01 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | protoporphyrinogen oxidase | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473985.1. On or before Oct 3, 2007 this sequence version replaced XM_213944.4, XM_001054597.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN01906351 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: inferred from homology ##RefSeq-Attributes-END## |
1 | ATGGCCCGGA CTGTGATAGT GCTTGGCGGA GGTATCAGCG GATTGGCCGC AAGTTATCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001099438.1 |
CDS | 317..1750 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001105968.1 |
1 | ATGGCCCGGA CTGTGATAGT GCTTGGCGGA GGTATCAGCG GATTGGCCGC AAGTTATCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa35607 | |
Clone ID Related Accession (Same CDS sequence) | XM_006250241.2 , XM_006250240.3 | |
Accession Version | XM_006250241.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1467bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | protoporphyrinogen oxidase isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005112.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006250241.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCCGGA CTGTGATAGT GCTTGGCGGA GGTATCAGCG GATTGGCCGC AAGTTATCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006250303.1 |
CDS | 350..1816 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006250241.2 |
1 | ATGGCCCGGA CTGTGATAGT GCTTGGCGGA GGTATCAGCG GATTGGCCGC AAGTTATCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa35607 | |
Clone ID Related Accession (Same CDS sequence) | XM_006250241.2 , XM_006250240.3 | |
Accession Version | XM_006250240.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1467bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | protoporphyrinogen oxidase isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005112.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006250240.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCCGGA CTGTGATAGT GCTTGGCGGA GGTATCAGCG GATTGGCCGC AAGTTATCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006250302.1 |
CDS | 1183..2649 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006250240.3 |
1 | ATGGCCCGGA CTGTGATAGT GCTTGGCGGA GGTATCAGCG GATTGGCCGC AAGTTATCAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa35608 | |
Clone ID Related Accession (Same CDS sequence) | XM_006250243.1 | |
Accession Version | XM_006250243.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1302bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | protoporphyrinogen oxidase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005112.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTGCGAT CTTTGAACTT GGACCTCGAG GAATTAGGCC GGCTGGAGCC CTGGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006250305.1 |
CDS | 157..1458 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006250243.1 |
1 | ATGGTGCGAT CTTTGAACTT GGACCTCGAG GAATTAGGCC GGCTGGAGCC CTGGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Synthesis, delivery and regulation of eukaryotic heme and Fe-S cluster cofactors. |
Biosynthesis of heme in mammals. |
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. |
A mouse model for South African (R59W) variegate porphyria: construction and initial characterization. |
Variegate porphyria in Western Europe: identification of PPOX gene mutations in 104 families, extent of allelic heterogeneity, and absence of correlation between phenotype and type of mutation. |