Gene Symbol | Snrpd1 |
Entrez Gene ID | 291794 |
Full Name | small nuclear ribonucleoprotein D1 polypeptide |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Snrpd1 cDNA ORF clone
gRNAs
Gene Symbol | Snrpd1 |
Entrez Gene ID | 291794 |
Full Name | small nuclear ribonucleoprotein D1 polypeptide |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001106163.1 | NP_001099633.1 | small nuclear ribonucleoprotein Sm D1 |
XM_008771943.2 | XP_008770165.1 | small nuclear ribonucleoprotein Sm D1 isoform X1 |
Pan troglodytes (chimpanzee) | SNRPD1 | XP_512054.2 |
Mus musculus (house mouse) | Snrpd1 | NP_033252.1 |
Caenorhabditis elegans (roundworm) | snr-3 | NP_495306.1 |
Arabidopsis thaliana (thale cress) | AT3G07590 | NP_001189837.1 |
Danio rerio (zebrafish) | snrpd1 | NP_775359.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP007246 | XP_308555.4 |
Magnaporthe oryzae (rice blast fungus) | MGG_04741 | XP_003713702.1 |
Homo sapiens (human) | SNRPD1 | NP_008869.1 |
Rattus norvegicus (Norway rat) | Snrpd1 | NP_001099633.1 |
Xenopus tropicalis (tropical clawed frog) | snrpd1 | NP_001004780.1 |
SNRPD1 | XP_001091972.1 | |
Canis lupus familiaris (dog) | SNRPD1 | XP_537302.1 |
Drosophila melanogaster (fruit fly) | SmD1 | NP_524774.1 |
Schizosaccharomyces pombe (fission yeast) | smd1 | NP_594613.1 |
Arabidopsis thaliana (thale cress) | AT4G02840 | NP_192193.1 |
Oryza sativa (rice) | Os02g0586500 | NP_001047268.1 |
Oryza sativa (rice) | Os04g0470200 | NP_001053049.2 |
Bos taurus (cattle) | SNRPD1 | NP_001030237.1 |
Gallus gallus (chicken) | SNRPD1 | NP_001264927.1 |
Neurospora crassa | NCU00505 | XP_964309.1 |
Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.
Bertram K, Agafonov DE, Dybkov O, Haselbach D, Leelaram MN, Will CL, Urlaub H, Kastner B, L?hrmann R, Stark H
Cell170(4)701-713.e11(2017 Aug)
Cryo-EM structure of a human spliceosome activated for step 2 of splicing.
Bertram K, Agafonov DE, Liu WT, Dybkov O, Will CL, Hartmuth K, Urlaub H, Kastner B, Stark H, L?hrmann R
Nature542(7641)318-323(2017 02)
Molecular architecture of the human U4/U6.U5 tri-snRNP.
Agafonov DE, Kastner B, Dybkov O, Hofele RV, Liu WT, Urlaub H, L?hrmann R, Stark H
Science (New York, N.Y.)351(6280)1416-20(2016 Mar)
Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5' splice site recognition.
Kondo Y, Oubridge C, van Roon AM, Nagai K
eLife4(2015 Jan)
Low-molecular-mass secretome profiling identifies C-C motif chemokine 5 as a potential plasma biomarker and therapeutic target for nasopharyngeal carcinoma.
Lin SJ, Chang KP, Hsu CW, Chi LM, Chien KY, Liang Y, Tsai MH, Lin YT, Yu JS
Journal of proteomics94186-201(2013 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Snrpd1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Snrpd1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa00294 | |
Clone ID Related Accession (Same CDS sequence) | NM_001106163.1 | |
Accession Version | NM_001106163.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 360bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-18 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | small nuclear ribonucleoprotein Sm D1 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474073.1. On or before Oct 4, 2007 this sequence version replaced XM_001060646.1, XM_214621.4. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC167095.1, EV775769.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAAGCTCG TGAGATTTTT GATGAAATTG AGTCATGAAA CCGTAACCAT TGAATTGAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001099633.1 |
CDS | 118..477 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAGCTCG TGAGATTTTT GATGAAATTG AGTCATGAAA CCGTAACCAT TGAATTGAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa44976 | |
Clone ID Related Accession (Same CDS sequence) | XM_008771943.2 | |
Accession Version | XM_008771943.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 237bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | small nuclear ribonucleoprotein Sm D1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005117.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008771943.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGCTCG TGAGATTTTT GATGAAATTG AGTCATGAAA CCGTAACCAT TGAATTGAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008770165.1 |
CDS | 132..368 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAAGCTCG TGAGATTTTT GATGAAATTG AGTCATGAAA CCGTAACCAT TGAATTGAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation. |
Cryo-EM structure of a human spliceosome activated for step 2 of splicing. |
Molecular architecture of the human U4/U6.U5 tri-snRNP. |
Crystal structure of human U1 snRNP, a small nuclear ribonucleoprotein particle, reveals the mechanism of 5' splice site recognition. |
Low-molecular-mass secretome profiling identifies C-C motif chemokine 5 as a potential plasma biomarker and therapeutic target for nasopharyngeal carcinoma. |