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Sfr1 cDNA ORF clone, Rattus norvegicus(Norway rat)

Summary

Gene Symbol Sfr1
Entrez Gene ID 294030
Full Name SWI5-dependent homologous recombination repair protein 1
Synonyms LRRGT00030,Meir5,RGD1305481
General protein information
Preferred Names

SWI5-dependent homologous recombination repair protein 1

Names

swi5-dependent recombination DNA repair protein 1 homolog
MEI5 meiotic recombination protein homolog
MEI5 recombination repair protein homolog
SWI5-dependent recombination repair 1
liver regeneration-related protein LRRGT00030
meiosis protein 5 homolog
Gene Type protein-coding
Organism Rattus norvegicus(Norway rat)
Genome

1

1q54

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_017589044.1 XP_017444533.1 swi5-dependent recombination DNA repair protein 1 homolog isoform X1
NM_001047856.2 NP_001041321.2 swi5-dependent recombination DNA repair protein 1 homolog

Pathways from BioSystems


Homologies


Homo sapiens (human) SFR1 NP_001002759.1
Pan troglodytes (chimpanzee) SFR1 XP_003312845.1
LOC715145 XP_001114219.1
Xenopus tropicalis (tropical clawed frog) sfr1 XP_004915900.1
Canis lupus familiaris (dog) SFR1 XP_005637751.1
Mus musculus (house mouse) Sfr1 NP_080653.2
Gallus gallus (chicken) SFR1 XP_001234168.2
Bos taurus (cattle) SFR1 XP_003587924.1
Rattus norvegicus (Norway rat) Sfr1 NP_001041321.2
Danio rerio (zebrafish) sfr1 NP_001076329.1

Gene Ontology


Bibliography

Related articles in PubMed

DNA homologous recombination factor SFR1 physically and functionally interacts with estrogen receptor alpha.
Feng Y, Singleton D, Guo C, Gardner A, Pakala S, Kumar R, Jensen E, Zhang J, Khan S
PloS one8(7)e68075(2013)

The role of the human SWI5-MEI5 complex in homologous recombination repair.
Yuan J, Chen J
The Journal of biological chemistry286(11)9888-93(2011 Mar)

Role for the mammalian Swi5-Sfr1 complex in DNA strand break repair through homologous recombination.
Akamatsu Y, Jasin M
PLoS genetics6(10)e1001160(2010 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Sfr1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Sfr1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ORa04196 NM_001047856.2
Latest version!		 Rattus norvegicus SWI5-dependent homologous recombination repair protein 1 (Sfr1), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $188.30
$269.00
ORa56532 XM_017589044.1
Latest version!		 Rattus norvegicus SWI5-dependent homologous recombination repair protein 1 (Sfr1), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 9-11 $139.30
$199.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ORa04196
Clone ID Related Accession (Same CDS sequence) NM_001047856.2
Accession Version NM_001047856.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 771bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-09-21
Organism Rattus norvegicus(Norway rat)
Product swi5-dependent recombination DNA repair protein 1 homolog
Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from FM118556.1 and AC096311.8. On Mar 4, 2011 this sequence version replaced NM_001047856.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: FM118556.1, FQ214391.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
ATGGCTGAGG AAGAAGGAAA TCAGGAGATC ACTTCCAAGA TGGAAAACCC CTCAGATTCA 
GCATCCACTT CACCTGACAT TCCTCAGACC AGTGAGAATC CACCATCACC CCCAACCTCA 
CCTGACAAGC CTCAGACCAG TGAAAATCCA CCATCACTCC ATTCGAATAG TTCAGGAAAA 
CAACCTATGA GTGGGACACT TAAAGAAAGA TTAAAGAAAG CAAGAGCTTC ATCTCAACCT 
TTTTGTAGTG TGGTGAAGCG TATTAAGGTA GAGAATGAAG AAAATGATCA GACCCTTTCA 
GAACCAGGAG AATCTTCAAA AGAAGAAAAC TGTTCAAAAG CCCAAGAAAG CCTGGAAAAC 
AAAGACAATG AACCTGAAAA AGAGAGCTCA GAGGATAAAA ATACGAGTGA ATCTAAGTCA 
CTTGATACTG GGTCATCCAG TGTCCTCCAA AAAGATTCTA CTGAGAAGAC TATAAAGCAA 
ACTTTGAAGG AAGAAAAAGC AAAACTGACT AGGCAGGTTC AAGAGAAGGA AGACCTTCTT 
CGGAGGTTAA AGTTAGTCAA AATGTACAGA ATAAAGAATG ACGTGACTGA GTTAGAGGAT 
TTAATAAAGA AGTGGAGGAG GTGTGGCCAG CGGCTGCTGT GCGAGTTGCA GTCAATCATG 
TCCGAGGATG AGGACGAGAA GCTGACCCTC ACTGAGTTGA TCGACTACTA TGGGATAGAC 
GACAAATTGC TGCACTATAA TAGAACTGAA GAAGAGTTCA CAGGGGTTTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001041321.2
CDS65..835
Translation

Target ORF information:

RefSeq Version NM_001047856.2
Organism Rattus norvegicus(Norway rat)
Definition Rattus norvegicus SWI5-dependent homologous recombination repair protein 1 (Sfr1), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001047856.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
ATGGCTGAGG AAGAAGGAAA TCAGGAGATC ACTTCCAAGA TGGAAAACCC CTCAGATTCA 
GCATCCACTT CACCTGACAT TCCTCAGACC AGTGAGAATC CACCATCACC CCCAACCTCA 
CCTGACAAGC CTCAGACCAG TGAAAATCCA CCATCACTCC ATTCGAATAG TTCAGGAAAA 
CAACCTATGA GTGGGACACT TAAAGAAAGA TTAAAGAAAG CAAGAGCTTC ATCTCAACCT 
TTTTGTAGTG TGGTGAAGCG TATTAAGGTA GAGAATGAAG AAAATGATCA GACCCTTTCA 
GAACCAGGAG AATCTTCAAA AGAAGAAAAC TGTTCAAAAG CCCAAGAAAG CCTGGAAAAC 
AAAGACAATG AACCTGAAAA AGAGAGCTCA GAGGATAAAA ATACGAGTGA ATCTAAGTCA 
CTTGATACTG GGTCATCCAG TGTCCTCCAA AAAGATTCTA CTGAGAAGAC TATAAAGCAA 
ACTTTGAAGG AAGAAAAAGC AAAACTGACT AGGCAGGTTC AAGAGAAGGA AGACCTTCTT 
CGGAGGTTAA AGTTAGTCAA AATGTACAGA ATAAAGAATG ACGTGACTGA GTTAGAGGAT 
TTAATAAAGA AGTGGAGGAG GTGTGGCCAG CGGCTGCTGT GCGAGTTGCA GTCAATCATG 
TCCGAGGATG AGGACGAGAA GCTGACCCTC ACTGAGTTGA TCGACTACTA TGGGATAGAC 
GACAAATTGC TGCACTATAA TAGAACTGAA GAAGAGTTCA CAGGGGTTTG A

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ORa56532
Clone ID Related Accession (Same CDS sequence) XM_017589044.1
Accession Version XM_017589044.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 732bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-07-25
Organism Rattus norvegicus(Norway rat)
Product swi5-dependent recombination DNA repair protein 1 homolog isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
ATGGAAAACC CCTCAGATTC AGCATCCACT TCACCTGACA TTCCTCAGAC CAGTGAGAAT 
CCACCATCAC CCCCAACCTC ACCTGACAAG CCTCAGACCA GTGAAAATCC ACCATCACTC 
CATTCGAATA GTTCAGGAAA ACAACCTATG AGTGGGACAC TTAAAGAAAG ATTAAAGAAA 
GCAAGAGCTT CATCTCAACC TTTTTGTAGT GTGGTGAAGC GTATTAAGGT AGAGAATGAA 
GAAAATGATC AGACCCTTTC AGAACCAGGA GAATCTTCAA AAGAAGAAAA CTGTTCAAAA 
GCCCAAGAAA GCCTGGAAAA CAAAGACAAT GAACCTGAAA AAGAGAGCTC AGAGGATAAA 
AATACGAGTG AATCTAAGTC ACTTGATACT GGGTCATCCA GTGTCCTCCA AAAAGATTCT 
ACTGAGAAGA CTATAAAGCA AACTTTGAAG GAAGAAAAAG CAAAACTGAC TAGGCAGGTT 
CAAGAGAAGG AAGACCTTCT TCGGAGGTTA AAGTTAGTCA AAATGTACAG AATAAAGAAT 
GACGTGACTG AGTTAGAGGA TTTAATAAAG AAGTGGAGGA GGTGTGGCCA GCGGCTGCTG 
TGCGAGTTGC AGTCAATCAT GTCCGAGGAT GAGGACGAGA AGCTGACCCT CACTGAGTTG 
ATCGACTACT ATGGGATAGA CGACAAATTG CTGCACTATA ATAGAACTGA AGAAGAGTTC 
ACAGGGGTTT GA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_017444533.1
CDS51..782
Translation

Target ORF information:

RefSeq Version XM_017589044.1
Organism Rattus norvegicus(Norway rat)
Definition Rattus norvegicus SWI5-dependent homologous recombination repair protein 1 (Sfr1), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_017589044.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
ATGGAAAACC CCTCAGATTC AGCATCCACT TCACCTGACA TTCCTCAGAC CAGTGAGAAT 
CCACCATCAC CCCCAACCTC ACCTGACAAG CCTCAGACCA GTGAAAATCC ACCATCACTC 
CATTCGAATA GTTCAGGAAA ACAACCTATG AGTGGGACAC TTAAAGAAAG ATTAAAGAAA 
GCAAGAGCTT CATCTCAACC TTTTTGTAGT GTGGTGAAGC GTATTAAGGT AGAGAATGAA 
GAAAATGATC AGACCCTTTC AGAACCAGGA GAATCTTCAA AAGAAGAAAA CTGTTCAAAA 
GCCCAAGAAA GCCTGGAAAA CAAAGACAAT GAACCTGAAA AAGAGAGCTC AGAGGATAAA 
AATACGAGTG AATCTAAGTC ACTTGATACT GGGTCATCCA GTGTCCTCCA AAAAGATTCT 
ACTGAGAAGA CTATAAAGCA AACTTTGAAG GAAGAAAAAG CAAAACTGAC TAGGCAGGTT 
CAAGAGAAGG AAGACCTTCT TCGGAGGTTA AAGTTAGTCA AAATGTACAG AATAAAGAAT 
GACGTGACTG AGTTAGAGGA TTTAATAAAG AAGTGGAGGA GGTGTGGCCA GCGGCTGCTG 
TGCGAGTTGC AGTCAATCAT GTCCGAGGAT GAGGACGAGA AGCTGACCCT CACTGAGTTG 
ATCGACTACT ATGGGATAGA CGACAAATTG CTGCACTATA ATAGAACTGA AGAAGAGTTC 
ACAGGGGTTT GA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

DNA homologous recombination factor SFR1 physically and functionally interacts with estrogen receptor alpha.
PloS one8(7)e68075(2013)
Feng Y,Singleton D,Guo C,Gardner A,Pakala S,Kumar R,Jensen E,Zhang J,Khan S


book

The role of the human SWI5-MEI5 complex in homologous recombination repair.
The Journal of biological chemistry286(11)9888-93(2011 Mar)
Yuan J,Chen J


book

Role for the mammalian Swi5-Sfr1 complex in DNA strand break repair through homologous recombination.
PLoS genetics6(10)e1001160(2010 Oct)
Akamatsu Y,Jasin M