Gene Symbol | Pus1 |
Entrez Gene ID | 304567 |
Full Name | pseudouridylate synthase 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Pus1 cDNA ORF clone
Gene Symbol | Pus1 |
Entrez Gene ID | 304567 |
Full Name | pseudouridylate synthase 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_017598352.1 | XP_017453841.1 | tRNA pseudouridine synthase A, mitochondrial isoform X2 |
NM_001025563.1 | NP_001020734.1 | tRNA pseudouridine synthase A |
XM_008769330.2 | XP_008767552.1 | tRNA pseudouridine synthase A, mitochondrial isoform X1 |
XM_006249547.3 | XP_006249609.1 | tRNA pseudouridine synthase A, mitochondrial isoform X1 |
XM_008769331.2 | XP_008767553.1 | tRNA pseudouridine synthase A, mitochondrial isoform X1 |
Mus musculus (house mouse) | Pus1 | NP_001020732.1 |
Neurospora crassa | NCU07528 | XP_959041.1 |
Xenopus tropicalis (tropical clawed frog) | pus1 | XP_002931922.1 |
Homo sapiens (human) | PUS1 | NP_079491.2 |
Caenorhabditis elegans (roundworm) | pus-1 | NP_507242.1 |
Schizosaccharomyces pombe (fission yeast) | pus1 | NP_588446.1 |
Pan troglodytes (chimpanzee) | PUS1 | XP_001139560.1 |
Bos taurus (cattle) | PUS1 | XP_002694500.1 |
Rattus norvegicus (Norway rat) | Pus1 | NP_001020734.1 |
Canis lupus familiaris (dog) | PUS1 | XP_005636135.1 |
Gallus gallus (chicken) | PUS1 | XP_415090.1 |
Saccharomyces cerevisiae (baker's yeast) | PUS1 | NP_015112.1 |
Kluyveromyces lactis | KLLA0B02244g | XP_451631.1 |
Eremothecium gossypii | AGOS_AFL105C | NP_985445.2 |
Oryza sativa (rice) | Os02g0668400 | NP_001047686.1 |
LOC719360 | XP_001113470.1 | |
Danio rerio (zebrafish) | pus1 | NP_001008603.1 |
Drosophila melanogaster (fruit fly) | CG4159 | NP_001163664.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP002409 | XP_312543.3 |
Magnaporthe oryzae (rice blast fungus) | MGG_07663 | XP_003711599.1 |
Arabidopsis thaliana (thale cress) | AT1G20370 | NP_564112.1 |
Arabidopsis thaliana (thale cress) | AT1G76120 | NP_565126.1 |
Steroid receptor RNA activator (SRA) modification by the human pseudouridine synthase 1 (hPus1p): RNA binding, activity, and atomic model.
Huet T, Miannay FA, Patton JR, Thore S
PloS one9(4)e94610(2014)
In human pseudouridine synthase 1 (hPus1), a C-terminal helical insert blocks tRNA from binding in the same orientation as in the Pus1 bacterial homologue TruA, consistent with their different target selectivities.
Czudnochowski N, Wang AL, Finer-Moore J, Stroud RM
Journal of molecular biology425(20)3875-87(2013 Oct)
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW
Cell149(6)1393-406(2012 Jun)
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Baltz AG, Munschauer M, Schwanh?usser B, Vasile A, Murakawa Y, Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E, Bonneau R, Selbach M, Dieterich C, Landthaler M
Molecular cell46(5)674-90(2012 Jun)
Pseudouridine synthase 1: a site-specific synthase without strict sequence recognition requirements.
Sibert BS, Patton JR
Nucleic acids research40(5)2107-18(2012 Mar)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Pus1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pus1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa07498 | |
Clone ID Related Accession (Same CDS sequence) | NM_001025563.1 | |
Accession Version | NM_001025563.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1272bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-03 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | tRNA pseudouridine synthase A | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC098689.2. On Jul 16, 2005 this sequence version replaced XM_222267.3. ##Evidence-Data-START## Transcript exon combination :: BC161821.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGGCTTCC CCCGCCTGTG GGCCGCACTG CTGAGAGCCT GGGGACGGTG GACGGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001020734.1 |
CDS | 257..1528 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001025563.1 |
1 | ATGGGCTTCC CCCGCCTGTG GGCCGCACTG CTGAGAGCCT GGGGACGGTG GACGGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa35164 | |
Clone ID Related Accession (Same CDS sequence) | XM_008769330.2 , XM_006249547.3 , XM_008769331.2 | |
Accession Version | XM_008769330.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1182bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | tRNA pseudouridine synthase A, mitochondrial isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005111.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008769330.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTGGAA ACAAGGTGCC ACCAGCGCTG CCCTCACACC AGCCGGACAG GAAGGGCCGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008767552.1 |
CDS | 495..1676 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008769330.2 |
1 | ATGGCTGGAA ACAAGGTGCC ACCAGCGCTG CCCTCACACC AGCCGGACAG GAAGGGCCGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa35164 | |
Clone ID Related Accession (Same CDS sequence) | XM_008769330.2 , XM_006249547.3 , XM_008769331.2 | |
Accession Version | XM_006249547.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1182bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | tRNA pseudouridine synthase A, mitochondrial isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005111.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006249547.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTGGAA ACAAGGTGCC ACCAGCGCTG CCCTCACACC AGCCGGACAG GAAGGGCCGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006249609.1 |
CDS | 487..1668 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006249547.3 |
1 | ATGGCTGGAA ACAAGGTGCC ACCAGCGCTG CCCTCACACC AGCCGGACAG GAAGGGCCGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa35164 | |
Clone ID Related Accession (Same CDS sequence) | XM_008769330.2 , XM_006249547.3 , XM_008769331.2 | |
Accession Version | XM_008769331.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1182bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | tRNA pseudouridine synthase A, mitochondrial isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005111.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008769331.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTGGAA ACAAGGTGCC ACCAGCGCTG CCCTCACACC AGCCGGACAG GAAGGGCCGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008767553.1 |
CDS | 491..1672 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008769331.2 |
1 | ATGGCTGGAA ACAAGGTGCC ACCAGCGCTG CCCTCACACC AGCCGGACAG GAAGGGCCGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa57827 | |
Clone ID Related Accession (Same CDS sequence) | XM_017598352.1 | |
Accession Version | XM_017598352.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1134bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | tRNA pseudouridine synthase A, mitochondrial isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005111.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGCTTCC CCCGCCTGTG GGCCGCACTG CTGAGAGCCT GGGGACGGTG GACGGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017453841.1 |
CDS | 711..1844 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017598352.1 |
1 | ATGGGCTTCC CCCGCCTGTG GGCCGCACTG CTGAGAGCCT GGGGACGGTG GACGGCGCGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Steroid receptor RNA activator (SRA) modification by the human pseudouridine synthase 1 (hPus1p): RNA binding, activity, and atomic model. |
In human pseudouridine synthase 1 (hPus1), a C-terminal helical insert blocks tRNA from binding in the same orientation as in the Pus1 bacterial homologue TruA, consistent with their different target selectivities. |
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. |
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. |
Pseudouridine synthase 1: a site-specific synthase without strict sequence recognition requirements. |