Gene Symbol | Ldb1 |
Entrez Gene ID | 309447 |
Full Name | LIM domain binding 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Ldb1 cDNA ORF clone
gRNAs
Gene Symbol | Ldb1 |
Entrez Gene ID | 309447 |
Full Name | LIM domain binding 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_017589290.1 | XP_017444779.1 | LIM domain-binding protein 1 isoform X4 |
XM_006231493.1 | XP_006231555.1 | LIM domain-binding protein 1 isoform X1 |
XM_017589289.1 | XP_017444778.1 | LIM domain-binding protein 1 isoform X3 |
NM_001107601.1 | NP_001101071.1 | LIM domain-binding protein 1 |
XM_006231494.1 | XP_006231556.1 | LIM domain-binding protein 1 isoform X2 |
Homo sapiens (human) | LDB1 | NP_001106878.1 |
Mus musculus (house mouse) | Ldb1 | NP_034827.1 |
Rattus norvegicus (Norway rat) | Ldb1 | NP_001101071.1 |
Gallus gallus (chicken) | LDB1 | NP_990401.1 |
LDB1 | XP_001111832.2 | |
Canis lupus familiaris (dog) | LDB1 | XP_850926.2 |
Bos taurus (cattle) | LDB1 | XP_002698495.1 |
Xenopus tropicalis (tropical clawed frog) | ldb1 | NP_998843.1 |
Pan troglodytes (chimpanzee) | LDB1 | XP_001170821.1 |
Danio rerio (zebrafish) | ldb1b | NP_571388.2 |
Constitutive scaffolding of multiple Wnt enhanceosome components by Legless/BCL9.
van Tienen LM, Mieszczanek J, Fiedler M, Rutherford TJ, Bienz M
eLife6(2017 Mar)
Lhx1 functions together with Otx2, Foxa2, and Ldb1 to govern anterior mesendoderm, node, and midline development.
Costello I, Nowotschin S, Sun X, Mould AW, Hadjantonakis AK, Bikoff EK, Robertson EJ
Genes & development29(20)2108-22(2015 Oct)
A high-confidence interaction map identifies SIRT1 as a mediator of acetylation of USP22 and the SAGA coactivator complex.
Armour SM, Bennett EJ, Braun CR, Zhang XY, McMahon SB, Gygi SP, Harper JW, Sinclair DA
Molecular and cellular biology33(8)1487-502(2013 Apr)
Multiple functions of Ldb1 required for beta-globin activation during erythroid differentiation.
Song SH, Kim A, Ragoczy T, Bender MA, Groudine M, Dean A
Blood116(13)2356-64(2010 Sep)
NKX3.1 is a direct TAL1 target gene that mediates proliferation of TAL1-expressing human T cell acute lymphoblastic leukemia.
Kusy S, Gerby B, Goardon N, Gault N, Ferri F, G?rard D, Armstrong F, Ballerini P, Cayuela JM, Baruchel A, Pflumio F, Rom?o PH
The Journal of experimental medicine207(10)2141-56(2010 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Ldb1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Ldb1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa11374 | |
Clone ID Related Accession (Same CDS sequence) | NM_001107601.1 | |
Accession Version | NM_001107601.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1128bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-10 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | LIM domain-binding protein 1 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473986.1. On or before Oct 4, 2007 this sequence version replaced XM_001058773.1, XM_219948.4. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN01906352 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGCTGGATC GGGATGTGGG CCCAACTCCC ATGTACCCAC CTACATACCT GGAGCCTGGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001101071.1 |
CDS | 647..1774 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGCTGGATC GGGATGTGGG CCCAACTCCC ATGTACCCAC CTACATACCT GGAGCCTGGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa24161 | |
Clone ID Related Accession (Same CDS sequence) | XM_006231493.1 | |
Accession Version | XM_006231493.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1236bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | LIM domain-binding protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCAGTGG GCTGTGCCTG TCCTGGTTGT TCCTCAAAGT CATTCAAGCT GTACTCCCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006231555.1 |
CDS | 371..1606 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCAGTGG GCTGTGCCTG TCCTGGTTGT TCCTCAAAGT CATTCAAGCT GTACTCCCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa24162 | |
Clone ID Related Accession (Same CDS sequence) | XM_006231494.1 | |
Accession Version | XM_006231494.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1230bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | LIM domain-binding protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCAGTGG GCTGTGCCTG TCCTGGTTGT TCCTCAAAGT CATTCAAGCT GTACTCCCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006231556.1 |
CDS | 371..1600 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCAGTGG GCTGTGCCTG TCCTGGTTGT TCCTCAAAGT CATTCAAGCT GTACTCCCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa56648 | |
Clone ID Related Accession (Same CDS sequence) | XM_017589289.1 | |
Accession Version | XM_017589289.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1029bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | LIM domain-binding protein 1 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCAGTGG GCTGTGCCTG TCCTGGTTGT TCCTCAAAGT CATTCAAGCT GTACTCCCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017444778.1 |
CDS | 371..1399 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCAGTGG GCTGTGCCTG TCCTGGTTGT TCCTCAAAGT CATTCAAGCT GTACTCCCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa56649 | |
Clone ID Related Accession (Same CDS sequence) | XM_017589290.1 | |
Accession Version | XM_017589290.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1023bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | LIM domain-binding protein 1 isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCAGTGG GCTGTGCCTG TCCTGGTTGT TCCTCAAAGT CATTCAAGCT GTACTCCCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017444779.1 |
CDS | 371..1393 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCAGTGG GCTGTGCCTG TCCTGGTTGT TCCTCAAAGT CATTCAAGCT GTACTCCCCG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Constitutive scaffolding of multiple Wnt enhanceosome components by Legless/BCL9. |
Lhx1 functions together with Otx2, Foxa2, and Ldb1 to govern anterior mesendoderm, node, and midline development. |
A high-confidence interaction map identifies SIRT1 as a mediator of acetylation of USP22 and the SAGA coactivator complex. |
Multiple functions of Ldb1 required for beta-globin activation during erythroid differentiation. |
NKX3.1 is a direct TAL1 target gene that mediates proliferation of TAL1-expressing human T cell acute lymphoblastic leukemia. |