Gene Symbol | Usp49 |
Entrez Gene ID | 316211 |
Full Name | ubiquitin specific peptidase 49 |
Synonyms | RGD1310513 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Usp49 cDNA ORF clone
Gene Symbol | Usp49 |
Entrez Gene ID | 316211 |
Full Name | ubiquitin specific peptidase 49 |
Synonyms | RGD1310513 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_017596411.1 | XP_017451900.1 | ubiquitin carboxyl-terminal hydrolase 49 isoform X1 |
NM_001136470.1 | NP_001129942.1 | ubiquitin carboxyl-terminal hydrolase 49 |
XM_006244435.3 | XP_006244497.1 | ubiquitin carboxyl-terminal hydrolase 49 isoform X1 |
XM_017596410.1 | XP_017451899.1 | ubiquitin carboxyl-terminal hydrolase 49 isoform X1 |
XM_008766858.2 | XP_008765080.1 | ubiquitin carboxyl-terminal hydrolase 49 isoform X1 |
Homo sapiens (human) | USP49 | NP_001273483.1 |
Bos taurus (cattle) | USP49 | XP_005223589.1 |
Mus musculus (house mouse) | Usp49 | NP_940813.1 |
Rattus norvegicus (Norway rat) | Usp49 | NP_001129942.1 |
Pan troglodytes (chimpanzee) | USP49 | XP_518467.3 |
Canis lupus familiaris (dog) | USP49 | XP_532134.3 |
Xenopus tropicalis (tropical clawed frog) | usp49 | XP_004910733.1 |
USP49 | XP_001085366.1 | |
Gallus gallus (chicken) | USP49 | XP_001231682.1 |
Danio rerio (zebrafish) | usp49 | NP_001038361.1 |
USP49 deubiquitinates histone H2B and regulates cotranscriptional pre-mRNA splicing.
Zhang Z, Jones A, Joo HY, Zhou D, Cao Y, Chen S, Erdjument-Bromage H, Renfrow M, He H, Tempst P, Townes TM, Giles KE, Ma L, Wang H
Genes & development27(14)1581-95(2013 Jul)
Gene and alternative splicing annotation with AIR.
Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G
Genome research15(1)54-66(2005 Jan)
Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases.
Quesada V, D?az-Perales A, Guti?rrez-Fern?ndez A, Garabaya C, Cal S, L?pez-Ot?n C
Biochemical and biophysical research communications314(1)54-62(2004 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Usp49 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Usp49 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa04226 | |
Clone ID Related Accession (Same CDS sequence) | XM_017596411.1 , NM_001136470.1 , XM_006244435.3 , XM_017596410.1 , XM_008766858.2 | |
Accession Version | NM_001136470.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2058bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-31 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin carboxyl-terminal hydrolase 49 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AC129162.5. On or before Nov 1, 2008 this sequence version replaced XM_001064731.1, XM_236919.4. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGATAGAT GCAAACATGT AGGGCGGTTA CGGCTCGCCC AGGATCACTC CATCCTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001129942.1 |
CDS | 450..2507 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001136470.1 |
1 | ATGGATAGAT GCAAACATGT AGGGCGGTTA CGGCTCGCCC AGGATCACTC CATCCTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa04226 | |
Clone ID Related Accession (Same CDS sequence) | XM_017596411.1 , NM_001136470.1 , XM_006244435.3 , XM_017596410.1 , XM_008766858.2 | |
Accession Version | XM_017596411.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2058bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin carboxyl-terminal hydrolase 49 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005108.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATAGAT GCAAACATGT AGGGCGGTTA CGGCTCGCCC AGGATCACTC CATCCTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017451900.1 |
CDS | 1034..3091 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017596411.1 |
1 | ATGGATAGAT GCAAACATGT AGGGCGGTTA CGGCTCGCCC AGGATCACTC CATCCTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa04226 | |
Clone ID Related Accession (Same CDS sequence) | XM_017596411.1 , NM_001136470.1 , XM_006244435.3 , XM_017596410.1 , XM_008766858.2 | |
Accession Version | XM_006244435.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2058bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin carboxyl-terminal hydrolase 49 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005108.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006244435.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATAGAT GCAAACATGT AGGGCGGTTA CGGCTCGCCC AGGATCACTC CATCCTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006244497.1 |
CDS | 69..2126 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006244435.3 |
1 | ATGGATAGAT GCAAACATGT AGGGCGGTTA CGGCTCGCCC AGGATCACTC CATCCTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa04226 | |
Clone ID Related Accession (Same CDS sequence) | XM_017596411.1 , NM_001136470.1 , XM_006244435.3 , XM_017596410.1 , XM_008766858.2 | |
Accession Version | XM_017596410.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2058bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin carboxyl-terminal hydrolase 49 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005108.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATAGAT GCAAACATGT AGGGCGGTTA CGGCTCGCCC AGGATCACTC CATCCTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017451899.1 |
CDS | 173..2230 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017596410.1 |
1 | ATGGATAGAT GCAAACATGT AGGGCGGTTA CGGCTCGCCC AGGATCACTC CATCCTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa04226 | |
Clone ID Related Accession (Same CDS sequence) | XM_017596411.1 , NM_001136470.1 , XM_006244435.3 , XM_017596410.1 , XM_008766858.2 | |
Accession Version | XM_008766858.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2058bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | ubiquitin carboxyl-terminal hydrolase 49 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005108.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008766858.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGATAGAT GCAAACATGT AGGGCGGTTA CGGCTCGCCC AGGATCACTC CATCCTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008765080.1 |
CDS | 556..2613 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008766858.2 |
1 | ATGGATAGAT GCAAACATGT AGGGCGGTTA CGGCTCGCCC AGGATCACTC CATCCTGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
USP49 deubiquitinates histone H2B and regulates cotranscriptional pre-mRNA splicing. |
Gene and alternative splicing annotation with AIR. |
Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases. |