Gene Symbol | Arid5a |
Entrez Gene ID | 316327 |
Full Name | AT-rich interaction domain 5A |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Arid5a cDNA ORF clone
Gene Symbol | Arid5a |
Entrez Gene ID | 316327 |
Full Name | AT-rich interaction domain 5A |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_017596439.1 | XP_017451928.1 | AT-rich interactive domain-containing protein 5A isoform X3 |
XM_017596441.1 | XP_017451930.1 | AT-rich interactive domain-containing protein 5A isoform X4 |
XM_017596438.1 | XP_017451927.1 | AT-rich interactive domain-containing protein 5A isoform X3 |
XM_017596440.1 | XP_017451929.1 | AT-rich interactive domain-containing protein 5A isoform X4 |
XM_006244807.3 | XP_006244869.1 | AT-rich interactive domain-containing protein 5A isoform X2 |
XM_006244806.3 | XP_006244868.1 | AT-rich interactive domain-containing protein 5A isoform X1 |
NM_001034934.1 | NP_001030106.1 | AT-rich interactive domain-containing protein 5A |
Gallus gallus (chicken) | ARID5A | XP_004947689.1 |
Mus musculus (house mouse) | Arid5a | NP_001165677.1 |
Pan troglodytes (chimpanzee) | ARID5A | XP_515631.3 |
Canis lupus familiaris (dog) | ARID5A | XP_540165.2 |
Rattus norvegicus (Norway rat) | Arid5a | NP_001030106.1 |
Bos taurus (cattle) | ARID5A | NP_001030426.1 |
Homo sapiens (human) | ARID5A | NP_997646.1 |
Arid5a exacerbates IFN-?-mediated septic shock by stabilizing T-bet mRNA.
Zaman MM, Masuda K, Nyati KK, Dubey PK, Ripley B, Wang K, Chalise JP, Higa M, Hanieh H, Kishimoto T
Proceedings of the National Academy of Sciences of the United States of America113(41)11543-11548(2016 10)
Arid5a regulates naive CD4+ T cell fate through selective stabilization of Stat3 mRNA.
Masuda K, Ripley B, Nyati KK, Dubey PK, Zaman MM, Hanieh H, Higa M, Yamashita K, Standley DM, Mashima T, Katahira M, Okamoto T, Matsuura Y, Takeuchi O, Kishimoto T
The Journal of experimental medicine213(4)605-19(2016 Apr)
Arid5a cooperates with Sox9 to stimulate chondrocyte-specific transcription.
Amano K, Hata K, Muramatsu S, Wakabayashi M, Takigawa Y, Ono K, Nakanishi M, Takashima R, Kogo M, Matsuda A, Nishimura R, Yoneda T
Molecular biology of the cell22(8)1300-11(2011 Apr)
Modulator recognition factor 1, an AT-rich interaction domain family member, is a novel corepressor for estrogen receptor alpha.
Georgescu SP, Li JH, Lu Q, Karas RH, Brown M, Mendelsohn ME
Molecular endocrinology (Baltimore, Md.)19(10)2491-501(2005 Oct)
DNA-binding properties of ARID family proteins.
Patsialou A, Wilsker D, Moran E
Nucleic acids research33(1)66-80(2005)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Arid5a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Arid5a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa09062 | |
Clone ID Related Accession (Same CDS sequence) | NM_001034934.1 | |
Accession Version | NM_001034934.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1296bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-27 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | AT-rich interactive domain-containing protein 5A | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC105777.1. On Oct 21, 2005 this sequence version replaced XM_237085.2. ##Evidence-Data-START## Transcript exon combination :: BC105777.1, DN932872.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCCAAGG AGCTGAGGGG AGATGATGGG GCCACTGAGA AGCTGAAGAA GGCCAAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001030106.1 |
CDS | 283..1578 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001034934.1 |
1 | ATGGCCAAGG AGCTGAGGGG AGATGATGGG GCCACTGAGA AGCTGAAGAA GGCCAAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa32146 | |
Clone ID Related Accession (Same CDS sequence) | XM_006244806.3 | |
Accession Version | XM_006244806.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1773bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | AT-rich interactive domain-containing protein 5A isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005108.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006244806.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCAGCAC CTTCGGCTAA GGGGAAAGCG GAGCAATCAG AGGAAGGTGA CCTCCAGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006244868.1 |
CDS | 114..1886 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006244806.3 |
1 | ATGGCAGCAC CTTCGGCTAA GGGGAAAGCG GAGCAATCAG AGGAAGGTGA CCTCCAGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa32147 | |
Clone ID Related Accession (Same CDS sequence) | XM_006244807.3 | |
Accession Version | XM_006244807.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1770bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | AT-rich interactive domain-containing protein 5A isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005108.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006244807.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCACCTT CGGCTAAGGG GAAAGCGGAG CAATCAGAGG AAGGTGACCT CCAGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006244869.1 |
CDS | 114..1883 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006244807.3 |
1 | ATGGCACCTT CGGCTAAGGG GAAAGCGGAG CAATCAGAGG AAGGTGACCT CCAGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa62754 | |
Clone ID Related Accession (Same CDS sequence) | XM_017596441.1 , XM_017596440.1 | |
Accession Version | XM_017596441.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1296bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | AT-rich interactive domain-containing protein 5A isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005108.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCAAGG AGCTGAGGGG AGATGATGGG GCCACTGAGA AGCTGAAGAA GGCCAAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017451930.1 |
CDS | 636..1931 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017596441.1 |
1 | ATGGCCAAGG AGCTGAGGGG AGATGATGGG GCCACTGAGA AGCTGAAGAA GGCCAAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa62754 | |
Clone ID Related Accession (Same CDS sequence) | XM_017596441.1 , XM_017596440.1 | |
Accession Version | XM_017596440.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1296bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | AT-rich interactive domain-containing protein 5A isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005108.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCAAGG AGCTGAGGGG AGATGATGGG GCCACTGAGA AGCTGAAGAA GGCCAAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017451929.1 |
CDS | 2338..3633 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017596440.1 |
1 | ATGGCCAAGG AGCTGAGGGG AGATGATGGG GCCACTGAGA AGCTGAAGAA GGCCAAGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa62753 | |
Clone ID Related Accession (Same CDS sequence) | XM_017596439.1 , XM_017596438.1 | |
Accession Version | XM_017596439.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1584bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | AT-rich interactive domain-containing protein 5A isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005108.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGGAGC GACACACGCC CATCGAGAGG GTGCCCCATC TTGGCTTCAA GCAGATTAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017451928.1 |
CDS | 2168..3751 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017596439.1 |
1 | ATGAAGGAGC GACACACGCC CATCGAGAGG GTGCCCCATC TTGGCTTCAA GCAGATTAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa62753 | |
Clone ID Related Accession (Same CDS sequence) | XM_017596439.1 , XM_017596438.1 | |
Accession Version | XM_017596438.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1584bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | AT-rich interactive domain-containing protein 5A isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005108.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGGAGC GACACACGCC CATCGAGAGG GTGCCCCATC TTGGCTTCAA GCAGATTAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017451927.1 |
CDS | 2171..3754 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017596438.1 |
1 | ATGAAGGAGC GACACACGCC CATCGAGAGG GTGCCCCATC TTGGCTTCAA GCAGATTAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Arid5a exacerbates IFN-?-mediated septic shock by stabilizing T-bet mRNA. |
Arid5a regulates naive CD4+ T cell fate through selective stabilization of Stat3 mRNA. |
Arid5a cooperates with Sox9 to stimulate chondrocyte-specific transcription. |
Modulator recognition factor 1, an AT-rich interaction domain family member, is a novel corepressor for estrogen receptor alpha. |
DNA-binding properties of ARID family proteins. |