Gene Symbol | Ss18 |
Entrez Gene ID | 361295 |
Full Name | SS18, nBAF chromatin remodeling complex subunit |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Ss18 cDNA ORF clone
gRNAs
Gene Symbol | Ss18 |
Entrez Gene ID | 361295 |
Full Name | SS18, nBAF chromatin remodeling complex subunit |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006254438.3 | XP_006254500.1 | protein SSXT isoform X2 |
XM_006254437.3 | XP_006254499.1 | protein SSXT isoform X1 |
NM_001100900.1 | NP_001094370.1 | protein SSXT |
Homo sapiens (human) | SS18 | NP_001007560.1 |
Mus musculus (house mouse) | Ss18 | NP_033306.2 |
Gallus gallus (chicken) | SS18 | NP_001265079.1 |
Danio rerio (zebrafish) | ss18 | NP_956038.1 |
Canis lupus familiaris (dog) | SS18 | XP_537295.3 |
Rattus norvegicus (Norway rat) | Ss18 | NP_001094370.1 |
Xenopus tropicalis (tropical clawed frog) | ss18 | NP_001072937.1 |
Kinetic analysis of npBAF to nBAF switching reveals exchange of SS18 with CREST and integration with neural developmental pathways.
Staahl BT, Tang J, Wu W, Sun A, Gitler AD, Yoo AS, Crabtree GR
The Journal of neuroscience : the official journal of the Society for Neuroscience33(25)10348-61(2013 Jun)
The synovial sarcoma SYT-SSX2 oncogene remodels the cytoskeleton through activation of the ephrin pathway.
Barco R, Hunt LB, Frump AL, Garcia CB, Benesh A, Caldwell RL, Eid JE
Molecular biology of the cell18(10)4003-12(2007 Oct)
Synovial sarcoma translocation (SYT) encodes a nuclear receptor coactivator.
Iwasaki T, Koibuchi N, Chin WW
Endocrinology146(9)3892-9(2005 Sep)
Identification of novel genes, SYT and SSX, involved in the t(X;18)(p11.2;q11.2) translocation found in human synovial sarcoma.
Clark J, Rocques PJ, Crew AJ, Gill S, Shipley J, Chan AM, Gusterson BA, Cooper CS
Nature genetics7(4)502-8(1994 Aug)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Ss18 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Ss18 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa00344 | |
Clone ID Related Accession (Same CDS sequence) | NM_001100900.1 | |
Accession Version | NM_001100900.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1257bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-18 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | protein SSXT | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AABR07031255.1. On or before Sep 13, 2008 this sequence version replaced XM_341580.3, XM_001073112.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN01906348, SAMN01906351 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGTCTGTGG CGTTCGCAGC CCCGAGGCAG CGGGGCAAGG GCGAGATCAC GCCCGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001094370.1 |
CDS | 53..1309 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTCTGTGG CGTTCGCAGC CCCGAGGCAG CGGGGCAAGG GCGAGATCAC GCCCGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa38196 | |
Clone ID Related Accession (Same CDS sequence) | XM_006254437.3 | |
Accession Version | XM_006254437.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1059bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | protein SSXT isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005117.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006254437.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTGTGG CGTTCGCAGC CCCGAGGCAG CGGGGCAAGG GCGAGATCAC GCCCGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006254499.1 |
CDS | 72..1130 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCTGTGG CGTTCGCAGC CCCGAGGCAG CGGGGCAAGG GCGAGATCAC GCCCGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa38197 | |
Clone ID Related Accession (Same CDS sequence) | XM_006254438.3 | |
Accession Version | XM_006254438.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1164bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | protein SSXT isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005117.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006254438.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTGTGG CGTTCGCAGC CCCGAGGCAG CGGGGCAAGG GCGAGATCAC GCCCGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006254500.1 |
CDS | 75..1238 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCTGTGG CGTTCGCAGC CCCGAGGCAG CGGGGCAAGG GCGAGATCAC GCCCGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Kinetic analysis of npBAF to nBAF switching reveals exchange of SS18 with CREST and integration with neural developmental pathways. |
The synovial sarcoma SYT-SSX2 oncogene remodels the cytoskeleton through activation of the ephrin pathway. |
Synovial sarcoma translocation (SYT) encodes a nuclear receptor coactivator. |
Identification of novel genes, SYT and SSX, involved in the t(X;18)(p11.2;q11.2) translocation found in human synovial sarcoma. |