Gene Symbol | Xrn2 |
Entrez Gene ID | 362229 |
Full Name | 5'-3' exoribonuclease 2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Xrn2 cDNA ORF clone
gRNAs
Gene Symbol | Xrn2 |
Entrez Gene ID | 362229 |
Full Name | 5'-3' exoribonuclease 2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006235156.3 | XP_006235218.1 | 5'-3' exoribonuclease 2 |
NM_001108596.2 | NP_001102066.2 | 5'-3' exoribonuclease 2 |
XM_017602625.1 | XP_017458114.1 | 5'-3' exoribonuclease 2 |
Eremothecium gossypii | AGOS_AGR303W | NP_986969.2 |
Pan troglodytes (chimpanzee) | XRN2 | XP_514546.2 |
Canis lupus familiaris (dog) | XRN2 | XP_534324.2 |
Rattus norvegicus (Norway rat) | Xrn2 | NP_001102066.1 |
Drosophila melanogaster (fruit fly) | Rat1 | NP_001260166.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP004090 | XP_309641.5 |
Caenorhabditis elegans (roundworm) | xrn-2 | NP_496958.2 |
Saccharomyces cerevisiae (baker's yeast) | RAT1 | NP_014691.1 |
Xenopus tropicalis (tropical clawed frog) | xrn2 | XP_002939479.1 |
Homo sapiens (human) | XRN2 | NP_036387.2 |
Bos taurus (cattle) | XRN2 | NP_001179401.1 |
Mus musculus (house mouse) | Xrn2 | NP_036047.2 |
Schizosaccharomyces pombe (fission yeast) | dhp1 | NP_594155.1 |
Neurospora crassa | NCU01643 | XP_956265.1 |
XRN2 | XP_001094734.2 | |
Gallus gallus (chicken) | XRN2 | NP_001026204.1 |
Danio rerio (zebrafish) | xrn2 | NP_001001944.2 |
Magnaporthe oryzae (rice blast fungus) | MGG_11426 | XP_003717803.1 |
Kluyveromyces lactis | KLLA0F07469g | XP_455419.1 |
Arabidopsis thaliana (thale cress) | XRN3 | NP_565114.1 |
Oryza sativa (rice) | Os01g0872700 | NP_001044947.1 |
Pilocarpine-induced seizures trigger differential regulation of microRNA-stability related genes in rat hippocampal neurons.
Kinjo ER, Higa GS, Santos BA, de Sousa E, Damico MV, Walter LT, Morya E, Valle AC, Britto LR, Kihara AH
Scientific reports620969(2016 Feb)
The roles of SSU processome components and surveillance factors in the initial processing of human ribosomal RNA.
Sloan KE, Bohnsack MT, Schneider C, Watkins NJ
RNA (New York, N.Y.)20(4)540-50(2014 Apr)
Gene expression signatures of primary and metastatic uterine leiomyosarcoma.
Davidson B, Abeler VM, F?rsund M, Holth A, Yang Y, Kobayashi Y, Chen L, Kristensen GB, Shih IeM, Wang TL
Human pathology45(4)691-700(2014 Apr)
A possible new mechanism for the control of miRNA expression in neurons.
Kinjo ER, Higa GS, de Sousa E, Casado OA, Damico MV, Britto LR, Kihara AH
Experimental neurology248546-58(2013 Oct)
Developmental and functional expression of miRNA-stability related genes in the nervous system.
de Sousa ?, Walter LT, Higa GS, Casado OA, Kihara AH
PloS one8(5)e56908(2013)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
XRN2 and PAPD4 and are highly expressed in the retina and have distinct gene expression profiles during development.
Title: Developmental and functional expression of miRNA-stability related genes in the nervous system.
The following Xrn2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Xrn2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa26464 | |
Clone ID Related Accession (Same CDS sequence) | XM_006235156.3 , NM_001108596.2 , XM_017602625.1 | |
Accession Version | XM_006235156.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2856bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | 5'-3' exoribonuclease 2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005102.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006235156.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGAGTCC CGGCGTTCTT CCGCTGGCTC AGCCGCAAGT ACCCGTCCAT CATTGTCAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006235218.1 |
CDS | 529..3384 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGAGTCC CGGCGTTCTT CCGCTGGCTC AGCCGCAAGT ACCCGTCCAT CATTGTCAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa26464 | |
Clone ID Related Accession (Same CDS sequence) | XM_006235156.3 , NM_001108596.2 , XM_017602625.1 | |
Accession Version | XM_017602625.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2856bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | 5'-3' exoribonuclease 2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (AC_000071.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGAGTCC CGGCGTTCTT CCGCTGGCTC AGCCGCAAGT ACCCGTCCAT CATTGTCAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017458114.1 |
CDS | 529..3384 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGAGTCC CGGCGTTCTT CCGCTGGCTC AGCCGCAAGT ACCCGTCCAT CATTGTCAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa26464 | |
Clone ID Related Accession (Same CDS sequence) | XM_006235156.3 , NM_001108596.2 , XM_017602625.1 | |
Accession Version | NM_001108596.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2856bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-02 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | 5'-3' exoribonuclease 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AABR07054104.1, AABR07054105.1, AABR07054106.1 and FQ201757.1. On or before Sep 3, 2019 this sequence version replaced XM_006235156.3, XM_017602625.1, NM_001108596.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. This RefSeq transcript is based on transcript alignments from orthologous data. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## inferred exon combination :: based on alignments, homology ##RefSeq-Attributes-END## |
1 | ATGGGAGTCC CGGCGTTCTT CCGCTGGCTC AGCCGCAAGT ACCCGTCCAT CATTGTCAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001102066.2 |
CDS | 46..2901 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGAGTCC CGGCGTTCTT CCGCTGGCTC AGCCGCAAGT ACCCGTCCAT CATTGTCAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Pilocarpine-induced seizures trigger differential regulation of microRNA-stability related genes in rat hippocampal neurons. |
The roles of SSU processome components and surveillance factors in the initial processing of human ribosomal RNA. |
Gene expression signatures of primary and metastatic uterine leiomyosarcoma. |
A possible new mechanism for the control of miRNA expression in neurons. |
Developmental and functional expression of miRNA-stability related genes in the nervous system. |